data_KZA # _chem_comp.id KZA _chem_comp.name "9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 F2 N10 O7 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-08 _chem_comp.pdbx_modified_date 2023-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 692.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KZA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A2X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KZA C2 C1 C 0 1 Y N N N N N 34.281 41.211 0.312 8.771 -0.834 1.237 C2 KZA 1 KZA C4 C2 C 0 1 Y N N N N N 34.182 39.192 1.267 6.766 0.107 0.624 C4 KZA 2 KZA C5 C3 C 0 1 Y N N N N N 35.493 39.241 1.675 6.899 1.042 1.664 C5 KZA 3 KZA C6 C4 C 0 1 Y N N N N N 36.192 40.402 1.336 8.042 0.969 2.480 C6 KZA 4 KZA N16 N1 N 0 1 N N N N N N 40.559 37.539 -1.549 -9.133 -0.915 3.361 N16 KZA 5 KZA C15 C5 C 0 1 Y N N N N N 39.262 35.543 -1.591 -7.381 -0.457 1.749 C15 KZA 6 KZA C18 C6 C 0 1 Y N N N N N 37.358 34.812 -2.196 -5.221 -0.545 1.581 C18 KZA 7 KZA C14 C7 C 0 1 Y N N N N N 39.252 34.207 -1.263 -7.043 -0.018 0.457 C14 KZA 8 KZA C21 C8 C 0 1 N N R N N N 32.361 37.460 1.487 5.009 -0.301 -1.151 C21 KZA 9 KZA C22 C9 C 0 1 N N R N N N 32.090 37.082 0.024 4.198 -1.515 -0.671 C22 KZA 10 KZA C23 C10 C 0 1 N N R N N N 32.572 35.630 -0.023 2.737 -1.033 -0.706 C23 KZA 11 KZA C24 C11 C 0 1 N N R N N N 32.034 35.123 1.317 2.755 0.237 -1.568 C24 KZA 12 KZA C25 C12 C 0 1 N N N N N N 32.676 33.881 1.871 2.088 1.388 -0.810 C25 KZA 13 KZA C12 C13 C 0 1 Y N N N N N 41.321 34.277 -0.423 -9.274 0.296 0.001 C12 KZA 14 KZA C16 C14 C 0 1 Y N N N N N 40.434 36.235 -1.276 -8.740 -0.492 2.103 C16 KZA 15 KZA C31 C15 C 0 1 N N R N N N 37.534 32.355 -1.502 -4.853 0.278 -0.776 C31 KZA 16 KZA C32 C16 C 0 1 N N S N N N 37.124 32.042 -0.059 -3.865 1.380 -0.384 C32 KZA 17 KZA C33 C17 C 0 1 N N R N N N 35.692 32.557 -0.039 -2.450 0.816 -0.541 C33 KZA 18 KZA C34 C18 C 0 1 N N R N N N 35.119 31.945 -1.321 -2.565 -0.561 -1.199 C34 KZA 19 KZA C35 C19 C 0 1 N N N N N N 33.837 32.571 -1.829 -1.789 -1.594 -0.380 C35 KZA 20 KZA C36 C20 C 0 1 N N N N N N 36.274 32.056 -2.342 -4.049 -0.939 -1.240 C36 KZA 21 KZA C8 C21 C 0 1 Y N N N N N 34.745 37.365 2.347 5.034 1.471 0.645 C8 KZA 22 KZA F22 F1 F 0 1 N N N N N N 30.724 37.159 -0.248 4.380 -2.598 -1.537 F22 KZA 23 KZA F32 F2 F 0 1 N N N N N N 37.163 30.669 0.167 -4.030 2.486 -1.226 F32 KZA 24 KZA N1 N2 N 0 1 Y N N N N N 35.567 41.384 0.650 8.940 0.023 2.228 N1 KZA 25 KZA N11 N3 N 0 1 Y N N N N N 41.461 35.584 -0.689 -9.639 -0.109 1.203 N11 KZA 26 KZA N13 N4 N 0 1 Y N N N N N 40.244 33.519 -0.682 -8.013 0.345 -0.375 N13 KZA 27 KZA N17 N5 N 0 1 Y N N N N N 38.069 35.920 -2.179 -6.223 -0.766 2.381 N17 KZA 28 KZA N19 N6 N 0 1 Y N N N N N 38.037 33.731 -1.673 -5.675 -0.084 0.381 N19 KZA 29 KZA N3 N7 N 0 1 Y N N N N N 33.520 40.141 0.586 7.718 -0.804 0.449 N3 KZA 30 KZA N6 N8 N 0 1 N N N N N N 37.474 40.561 1.680 8.227 1.862 3.520 N6 KZA 31 KZA N7 N9 N 0 1 Y N N N N N 35.845 38.088 2.355 5.809 1.844 1.622 N7 KZA 32 KZA N9 N10 N 0 1 Y N N N N N 33.697 37.994 1.718 5.581 0.403 -0.001 N9 KZA 33 KZA O23 O1 O 0 1 N N N N N N 32.034 34.951 -1.145 1.899 -2.027 -1.300 O23 KZA 34 KZA O24 O2 O 0 1 N N N N N N 32.221 36.248 2.227 4.112 0.561 -1.849 O24 KZA 35 KZA O25 O3 O 0 1 N N N N N N 34.041 34.148 2.211 0.947 1.841 -1.542 O25 KZA 36 KZA O26 O4 O 0 1 N N N N N N 36.393 33.482 2.650 -0.253 2.293 0.632 O26 KZA 37 KZA O33 O5 O 0 1 N N N N N N 35.007 32.086 1.114 -1.671 1.684 -1.365 O33 KZA 38 KZA O35 O6 O 0 1 N N N N N N 34.066 33.926 -2.274 -0.725 -2.127 -1.171 O35 KZA 39 KZA O36 O7 O 0 1 N N N N N N 33.396 36.275 -2.763 0.702 -2.335 0.900 O36 KZA 40 KZA P25 P1 P 0 1 N N R N N N 35.048 32.946 2.448 -0.361 2.456 -0.835 P25 KZA 41 KZA P35 P2 P 0 1 N N R N N N 32.858 34.938 -2.502 0.645 -2.686 -0.536 P35 KZA 42 KZA S26 S1 S 0 1 N N N N N N 34.369 31.779 4.003 -0.517 4.517 -1.307 S26 KZA 43 KZA S36 S2 S 0 1 N N N N N N 31.635 34.226 -3.995 0.715 -4.794 -0.752 S36 KZA 44 KZA H1 H1 H 0 1 N N N N N N 33.811 42.014 -0.236 9.528 -1.585 1.065 H1 KZA 45 KZA H2 H2 H 0 1 N N N N N N 41.461 37.857 -1.255 -8.467 -1.192 4.010 H2 KZA 46 KZA H3 H3 H 0 1 N N N N N N 40.459 37.684 -2.533 -10.074 -0.935 3.594 H3 KZA 47 KZA H4 H4 H 0 1 N N N N N N 36.350 34.755 -2.579 -4.182 -0.707 1.829 H4 KZA 48 KZA H5 H5 H 0 1 N N N N N N 31.606 38.192 1.809 5.805 -0.627 -1.820 H5 KZA 49 KZA H6 H6 H 0 1 N N N N N N 32.691 37.709 -0.652 4.486 -1.788 0.345 H6 KZA 50 KZA H7 H7 H 0 1 N N N N N N 33.672 35.600 -0.021 2.391 -0.802 0.302 H7 KZA 51 KZA H8 H8 H 0 1 N N N N N N 30.957 34.933 1.201 2.216 0.055 -2.500 H8 KZA 52 KZA H9 H9 H 0 1 N N N N N N 32.132 33.560 2.771 1.773 1.040 0.175 H9 KZA 53 KZA H10 H10 H 0 1 N N N N N N 32.638 33.083 1.115 2.797 2.208 -0.696 H10 KZA 54 KZA H11 H11 H 0 1 N N N N N N 42.159 33.785 0.047 -10.038 0.598 -0.701 H11 KZA 55 KZA H12 H12 H 0 1 N N N N N N 38.321 31.646 -1.799 -5.492 0.628 -1.587 H12 KZA 56 KZA H13 H13 H 0 1 N N N N N N 37.749 32.606 0.649 -4.033 1.676 0.651 H13 KZA 57 KZA H14 H14 H 0 1 N N N N N N 35.679 33.655 -0.103 -1.983 0.718 0.439 H14 KZA 58 KZA H15 H15 H 0 1 N N N N N N 34.932 30.877 -1.136 -2.169 -0.519 -2.214 H15 KZA 59 KZA H16 H16 H 0 1 N N N N N N 33.094 32.579 -1.018 -1.378 -1.118 0.509 H16 KZA 60 KZA H17 H17 H 0 1 N N N N N N 33.454 31.975 -2.671 -2.460 -2.400 -0.084 H17 KZA 61 KZA H18 H18 H 0 1 N N N N N N 36.082 32.873 -3.053 -4.234 -1.780 -0.572 H18 KZA 62 KZA H19 H19 H 0 1 N N N N N N 36.393 31.111 -2.893 -4.335 -1.205 -2.258 H19 KZA 63 KZA H20 H20 H 0 1 N N N N N N 34.673 36.382 2.788 4.096 1.939 0.385 H20 KZA 64 KZA H21 H21 H 0 1 N N N N N N 37.800 41.448 1.353 7.564 2.549 3.694 H21 KZA 65 KZA H22 H22 H 0 1 N N N N N N 37.559 40.521 2.676 9.020 1.802 4.076 H22 KZA 66 KZA H23 H23 H 0 1 N N N N N N 35.374 31.815 4.827 0.625 5.027 -0.814 H23 KZA 67 KZA H24 H24 H 0 1 N N N N N N 31.650 35.207 -4.848 -0.374 -5.203 -0.076 H24 KZA 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KZA S36 P35 SING N N 1 KZA O36 P35 DOUB N N 2 KZA P35 O35 SING N N 3 KZA P35 O23 SING N N 4 KZA C36 C31 SING N N 5 KZA C36 C34 SING N N 6 KZA O35 C35 SING N N 7 KZA C18 N17 DOUB Y N 8 KZA C18 N19 SING Y N 9 KZA N17 C15 SING Y N 10 KZA C35 C34 SING N N 11 KZA N19 C31 SING N N 12 KZA N19 C14 SING Y N 13 KZA C15 C16 DOUB Y N 14 KZA C15 C14 SING Y N 15 KZA N16 C16 SING N N 16 KZA C31 C32 SING N N 17 KZA C34 C33 SING N N 18 KZA C16 N11 SING Y N 19 KZA C14 N13 DOUB Y N 20 KZA O23 C23 SING N N 21 KZA N11 C12 DOUB Y N 22 KZA N13 C12 SING Y N 23 KZA F22 C22 SING N N 24 KZA C32 C33 SING N N 25 KZA C32 F32 SING N N 26 KZA C33 O33 SING N N 27 KZA C23 C22 SING N N 28 KZA C23 C24 SING N N 29 KZA C22 C21 SING N N 30 KZA C2 N3 DOUB Y N 31 KZA C2 N1 SING Y N 32 KZA N3 C4 SING Y N 33 KZA N1 C6 DOUB Y N 34 KZA O33 P25 SING N N 35 KZA C4 C5 DOUB Y N 36 KZA C4 N9 SING Y N 37 KZA C24 C25 SING N N 38 KZA C24 O24 SING N N 39 KZA C6 C5 SING Y N 40 KZA C6 N6 SING N N 41 KZA C21 N9 SING N N 42 KZA C21 O24 SING N N 43 KZA C5 N7 SING Y N 44 KZA N9 C8 SING Y N 45 KZA C25 O25 SING N N 46 KZA O25 P25 SING N N 47 KZA C8 N7 DOUB Y N 48 KZA P25 O26 DOUB N N 49 KZA P25 S26 SING N N 50 KZA C2 H1 SING N N 51 KZA N16 H2 SING N N 52 KZA N16 H3 SING N N 53 KZA C18 H4 SING N N 54 KZA C21 H5 SING N N 55 KZA C22 H6 SING N N 56 KZA C23 H7 SING N N 57 KZA C24 H8 SING N N 58 KZA C25 H9 SING N N 59 KZA C25 H10 SING N N 60 KZA C12 H11 SING N N 61 KZA C31 H12 SING N N 62 KZA C32 H13 SING N N 63 KZA C33 H14 SING N N 64 KZA C34 H15 SING N N 65 KZA C35 H16 SING N N 66 KZA C35 H17 SING N N 67 KZA C36 H18 SING N N 68 KZA C36 H19 SING N N 69 KZA C8 H20 SING N N 70 KZA N6 H21 SING N N 71 KZA N6 H22 SING N N 72 KZA S26 H23 SING N N 73 KZA S36 H24 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KZA InChI InChI 1.06 "InChI=1S/C21H24F2N10O7P2S2/c22-11-9(32-6-30-13-17(24)26-4-28-19(13)32)1-8-2-36-41(34,43)40-16-10(3-37-42(35,44)39-15(8)11)38-21(12(16)23)33-7-31-14-18(25)27-5-29-20(14)33/h4-12,15-16,21H,1-3H2,(H,34,43)(H,35,44)(H2,24,26,28)(H2,25,27,29)/t8-,9-,10-,11+,12-,15-,16-,21-,41-,42-/m1/s1" KZA InChIKey InChI 1.06 TYYDPOXHOPCCQR-SWACTAJXSA-N KZA SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H]4CO[P@](S)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P@](S)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67" KZA SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH]4CO[P](S)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](S)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67" KZA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]4CO[P@](=O)(O[C@@H]5[C@@H](CO[P@](=O)(O[C@H]4[C@H]3F)S)O[C@H]([C@@H]5F)n6cnc7c6ncnc7N)S)N" KZA SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CC4COP(=O)(OC5C(COP(=O)(OC4C3F)S)OC(C5F)n6cnc7c6ncnc7N)S)N" # _pdbx_chem_comp_identifier.comp_id KZA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KZA "Create component" 2022-06-08 PDBE KZA "Modify descriptor" 2022-08-22 RCSB KZA "Initial release" 2023-12-20 RCSB #