data_L0O # _chem_comp.id L0O _chem_comp.name 20-dihydrorosamicin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H53 N O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1~{S},2~{R},3~{R},7~{R},8~{S},9~{S},10~{R},12~{R},14~{E},16~{S})-9-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-3-ethyl-10-(2-hydroxyethyl)-2,8,12,16-tetramethyl-7-oxidanyl-4,17-dioxabicyclo[14.1.0]heptadec-14-ene-5,13-dione" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-09 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 583.754 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L0O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VGP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L0O C12 C1 C 0 1 N N N N N N 23.636 0.914 23.802 -0.247 -2.184 0.041 C12 L0O 1 L0O C13 C2 C 0 1 N N R N N N 24.062 -0.299 24.649 -0.593 -1.298 -1.158 C13 L0O 2 L0O C14 C3 C 0 1 N N S N N N 24.812 -1.349 23.802 -1.413 -0.097 -0.684 C14 L0O 3 L0O C15 C4 C 0 1 N N S N N N 24.796 -2.809 24.310 -0.884 1.176 -1.349 C15 L0O 4 L0O C16 C5 C 0 1 N N R N N N 23.393 -3.398 24.486 -0.214 2.062 -0.296 C16 L0O 5 L0O C17 C6 C 0 1 N N N N N N 23.298 -4.914 24.351 1.063 2.670 -0.879 C17 L0O 6 L0O C18 C7 C 0 1 N N N N N N 21.872 -5.405 24.511 2.170 2.586 0.140 C18 L0O 7 L0O C19 C8 C 0 1 N N N N N N 25.644 -3.019 25.562 -2.046 1.937 -1.991 C19 L0O 8 L0O C22 C9 C 0 1 N N S N N N 25.620 -1.441 19.049 -6.119 0.609 0.438 C22 L0O 9 L0O C23 C10 C 0 1 N N N N N N 26.210 -0.038 19.108 -5.968 -0.289 1.670 C23 L0O 10 L0O C24 C11 C 0 1 N N R N N N 26.688 0.338 20.497 -4.518 -0.234 2.157 C24 L0O 11 L0O C29 C12 C 0 1 N N N N N N 26.199 0.799 25.391 1.582 -0.131 -0.769 C29 L0O 12 L0O C28 C13 C 0 1 N N N N N N 24.867 0.223 25.808 0.697 -0.808 -1.818 C28 L0O 13 L0O C27 C14 C 0 1 N N N N N N 23.806 -1.229 17.392 -7.849 -0.897 -0.337 C27 L0O 14 L0O C26 C15 C 0 1 N N N N N N 26.025 -1.712 16.640 -8.449 1.137 0.833 C26 L0O 15 L0O C25 C16 C 0 1 N N N N N N 27.012 1.804 20.625 -4.345 -1.175 3.351 C25 L0O 16 L0O C30 C17 C 0 1 N N N N N N 22.229 3.033 23.641 0.409 -3.497 -1.981 C30 L0O 17 L0O N N1 N 0 1 N N N N N N 25.075 -1.866 17.738 -7.489 0.504 -0.081 N L0O 18 L0O C C18 C 0 1 N N N N N N 20.942 -2.330 21.934 5.495 -1.605 -1.178 C L0O 19 L0O O O1 O 0 1 N N N N N N 18.458 -2.388 22.189 5.920 -1.557 1.319 O L0O 20 L0O C1 C19 C 0 1 N N S N N N 19.743 -2.190 22.819 4.995 -1.789 0.256 C1 L0O 21 L0O C10 C20 C 0 1 N N N N N N 21.205 0.931 24.542 1.702 -3.713 0.124 C10 L0O 22 L0O C11 C21 C 0 1 N N R N N N 22.487 1.726 24.400 0.324 -3.514 -0.453 C11 L0O 23 L0O C2 C22 C 0 1 N N S N N N 18.879 -3.322 23.208 4.920 -0.550 1.150 C2 L0O 24 L0O C20 C23 C 0 1 N N S N N N 25.185 -1.253 21.471 -3.709 0.192 -0.060 C20 L0O 25 L0O C21 C24 C 0 1 N N R N N N 24.549 -1.587 20.121 -5.127 0.154 -0.637 C21 L0O 26 L0O C3 C25 C 0 1 N N R N N N 18.910 -4.694 22.589 5.348 0.790 0.547 C3 L0O 27 L0O C4 C26 C 0 1 N N R N N N 19.811 -5.714 23.278 4.310 1.860 0.894 C4 L0O 28 L0O C5 C27 C 0 1 N N N N N N 19.954 -6.924 22.356 4.995 3.225 0.983 C5 L0O 29 L0O C6 C28 C 0 1 N N N N N N 20.970 -7.972 22.710 5.555 3.604 -0.390 C6 L0O 30 L0O C7 C29 C 0 1 N N N N N N 17.484 -5.212 22.408 6.708 1.195 1.117 C7 L0O 31 L0O C8 C30 C 0 1 N N N N N N 19.855 -0.966 23.664 3.947 -2.855 0.451 C8 L0O 32 L0O C9 C31 C 0 1 N N N N N N 20.923 -0.119 23.599 2.725 -2.684 -0.060 C9 L0O 33 L0O O1 O2 O 0 1 N N N N N N 21.091 -5.048 23.477 3.288 1.897 -0.136 O1 L0O 34 L0O O2 O3 O 0 1 N N N N N N 21.466 -6.056 25.448 2.050 3.141 1.207 O2 L0O 35 L0O O3 O4 O 0 1 N N N N N N 22.919 -3.031 25.788 -1.109 3.109 0.085 O3 L0O 36 L0O O4 O5 O 0 1 N N N N N N 24.224 -1.340 22.488 -2.784 -0.285 -1.039 O4 L0O 37 L0O O5 O6 O 0 1 N N N N N N 25.657 0.085 21.467 -3.646 -0.640 1.100 O5 L0O 38 L0O O6 O7 O 0 1 N N N N N N 24.045 -2.909 20.132 -5.208 1.029 -1.763 O6 L0O 39 L0O O7 O8 O 0 1 N N N N N N 27.063 0.958 26.504 2.856 0.168 -1.342 O7 L0O 40 L0O O8 O9 O 0 1 N N N N N N 20.399 1.200 25.414 1.962 -4.725 0.742 O8 L0O 41 L0O H1 H1 H 0 1 N N N N N N 23.322 0.550 22.812 0.492 -1.680 0.664 H1 L0O 42 L0O H2 H2 H 0 1 N N N N N N 24.506 1.578 23.690 -1.148 -2.370 0.627 H2 L0O 43 L0O H3 H3 H 0 1 N N N N N N 23.151 -0.772 25.045 -1.174 -1.873 -1.878 H3 L0O 44 L0O H4 H4 H 0 1 N N N N N N 25.863 -1.032 23.728 -1.328 -0.003 0.399 H4 L0O 45 L0O H5 H5 H 0 1 N N N N N N 25.275 -3.405 23.519 -0.156 0.910 -2.116 H5 L0O 46 L0O H6 H6 H 0 1 N N N N N N 22.740 -2.948 23.724 0.035 1.461 0.579 H6 L0O 47 L0O H7 H7 H 0 1 N N N N N N 23.666 -5.207 23.357 1.352 2.119 -1.774 H7 L0O 48 L0O H8 H8 H 0 1 N N N N N N 23.924 -5.380 25.126 0.884 3.714 -1.136 H8 L0O 49 L0O H9 H9 H 0 1 N N N N N N 25.590 -4.074 25.870 -2.705 2.319 -1.211 H9 L0O 50 L0O H10 H10 H 0 1 N N N N N N 26.689 -2.754 25.345 -1.656 2.768 -2.577 H10 L0O 51 L0O H11 H11 H 0 1 N N N N N N 25.264 -2.381 26.373 -2.605 1.264 -2.641 H11 L0O 52 L0O H12 H12 H 0 1 N N N N N N 26.430 -2.139 19.309 -5.910 1.643 0.713 H12 L0O 53 L0O H13 H13 H 0 1 N N N N N N 27.063 0.014 18.416 -6.631 0.063 2.460 H13 L0O 54 L0O H14 H14 H 0 1 N N N N N N 25.439 0.681 18.794 -6.225 -1.315 1.407 H14 L0O 55 L0O H15 H15 H 0 1 N N N N N N 27.585 -0.251 20.738 -4.274 0.785 2.459 H15 L0O 56 L0O H16 H16 H 0 1 N N N N N N 26.671 0.121 24.665 1.108 0.792 -0.435 H16 L0O 57 L0O H17 H17 H 0 1 N N N N N N 26.034 1.780 24.922 1.713 -0.800 0.082 H17 L0O 58 L0O H18 H18 H 0 1 N N N N N N 24.287 1.011 26.311 1.229 -1.655 -2.250 H18 L0O 59 L0O H19 H19 H 0 1 N N N N N N 25.048 -0.604 26.510 0.454 -0.093 -2.604 H19 L0O 60 L0O H20 H20 H 0 1 N N N N N N 23.096 -1.349 18.224 -8.841 -0.941 -0.786 H20 L0O 61 L0O H21 H21 H 0 1 N N N N N N 23.973 -0.158 17.204 -7.122 -1.341 -1.017 H21 L0O 62 L0O H22 H22 H 0 1 N N N N N N 23.394 -1.700 16.487 -7.852 -1.448 0.604 H22 L0O 63 L0O H23 H23 H 0 1 N N N N N N 26.977 -2.194 16.908 -8.366 0.679 1.819 H23 L0O 64 L0O H24 H24 H 0 1 N N N N N N 25.618 -2.184 15.734 -8.232 2.202 0.908 H24 L0O 65 L0O H25 H25 H 0 1 N N N N N N 26.196 -0.642 16.451 -9.460 0.998 0.452 H25 L0O 66 L0O H26 H26 H 0 1 N N N N N N 27.352 2.017 21.649 -4.588 -2.193 3.049 H26 L0O 67 L0O H27 H27 H 0 1 N N N N N N 27.808 2.067 19.913 -3.312 -1.135 3.698 H27 L0O 68 L0O H28 H28 H 0 1 N N N N N N 26.113 2.399 20.406 -5.010 -0.865 4.157 H28 L0O 69 L0O H29 H29 H 0 1 N N N N N N 21.395 3.574 24.113 1.354 -3.048 -2.287 H29 L0O 70 L0O H30 H30 H 0 1 N N N N N N 23.134 3.658 23.669 0.351 -4.517 -2.359 H30 L0O 71 L0O H31 H31 H 0 1 N N N N N N 21.973 2.805 22.596 -0.419 -2.912 -2.384 H31 L0O 72 L0O H33 H33 H 0 1 N N N N N N 21.855 -2.158 22.523 5.536 -2.574 -1.676 H33 L0O 73 L0O H34 H34 H 0 1 N N N N N N 20.966 -3.344 21.507 4.814 -0.947 -1.719 H34 L0O 74 L0O H35 H35 H 0 1 N N N N N N 20.886 -1.591 21.121 6.491 -1.162 -1.161 H35 L0O 75 L0O H36 H36 H 0 1 N N N N N N 22.798 2.010 25.416 -0.325 -4.329 -0.134 H36 L0O 76 L0O H37 H37 H 0 1 N N N N N N 18.387 -3.248 24.189 4.119 -0.502 1.888 H37 L0O 77 L0O H38 H38 H 0 1 N N N N N N 26.013 -1.952 21.658 -3.454 1.216 0.212 H38 L0O 78 L0O H39 H39 H 0 1 N N N N N N 23.741 -0.868 19.920 -5.368 -0.863 -0.947 H39 L0O 79 L0O H40 H40 H 0 1 N N N N N N 19.317 -4.565 21.575 5.421 0.693 -0.536 H40 L0O 80 L0O H41 H41 H 0 1 N N N N N N 19.370 -6.021 24.238 3.850 1.622 1.854 H41 L0O 81 L0O H42 H42 H 0 1 N N N N N N 20.213 -6.544 21.357 4.271 3.975 1.300 H42 L0O 82 L0O H43 H43 H 0 1 N N N N N N 18.974 -7.421 22.316 5.809 3.177 1.707 H43 L0O 83 L0O H44 H44 H 0 1 N N N N N N 20.951 -8.771 21.955 5.972 4.610 -0.346 H44 L0O 84 L0O H45 H45 H 0 1 N N N N N N 21.971 -7.517 22.738 6.337 2.899 -0.671 H45 L0O 85 L0O H46 H46 H 0 1 N N N N N N 20.732 -8.395 23.697 4.755 3.574 -1.129 H46 L0O 86 L0O H47 H47 H 0 1 N N N N N N 17.512 -6.214 21.956 7.461 0.468 0.811 H47 L0O 87 L0O H48 H48 H 0 1 N N N N N N 16.986 -5.266 23.388 6.981 2.181 0.740 H48 L0O 88 L0O H49 H49 H 0 1 N N N N N N 16.926 -4.529 21.751 6.652 1.224 2.205 H49 L0O 89 L0O H50 H50 H 0 1 N N N N N N 19.057 -0.741 24.356 4.183 -3.753 1.001 H50 L0O 90 L0O H51 H51 H 0 1 N N N N N N 21.610 -0.247 22.776 2.492 -1.785 -0.611 H51 L0O 91 L0O H52 H52 H 0 1 N N N N N N 22.048 -3.386 25.920 -0.750 3.710 0.751 H52 L0O 92 L0O H53 H53 H 0 1 N N N N N N 23.378 -2.989 20.804 -4.606 0.800 -2.484 H53 L0O 93 L0O H54 H54 H 0 1 N N N N N N 27.891 1.321 26.213 3.528 0.422 -0.694 H54 L0O 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L0O C26 N SING N N 1 L0O C27 N SING N N 2 L0O N C22 SING N N 3 L0O C22 C23 SING N N 4 L0O C22 C21 SING N N 5 L0O C23 C24 SING N N 6 L0O C21 O6 SING N N 7 L0O C21 C20 SING N N 8 L0O C24 C25 SING N N 9 L0O C24 O5 SING N N 10 L0O O5 C20 SING N N 11 L0O C20 O4 SING N N 12 L0O C C1 SING N N 13 L0O O C1 SING N N 14 L0O O C2 SING N N 15 L0O C5 C6 SING N N 16 L0O C5 C4 SING N N 17 L0O C7 C3 SING N N 18 L0O O4 C14 SING N N 19 L0O C3 C2 SING N N 20 L0O C3 C4 SING N N 21 L0O C1 C2 SING N N 22 L0O C1 C8 SING N N 23 L0O C4 O1 SING N N 24 L0O O1 C18 SING N N 25 L0O C9 C8 DOUB N E 26 L0O C9 C10 SING N N 27 L0O C30 C11 SING N N 28 L0O C12 C11 SING N N 29 L0O C12 C13 SING N N 30 L0O C14 C15 SING N N 31 L0O C14 C13 SING N N 32 L0O C15 C16 SING N N 33 L0O C15 C19 SING N N 34 L0O C17 C16 SING N N 35 L0O C17 C18 SING N N 36 L0O C11 C10 SING N N 37 L0O C16 O3 SING N N 38 L0O C18 O2 DOUB N N 39 L0O C10 O8 DOUB N N 40 L0O C13 C28 SING N N 41 L0O C29 C28 SING N N 42 L0O C29 O7 SING N N 43 L0O C12 H1 SING N N 44 L0O C12 H2 SING N N 45 L0O C13 H3 SING N N 46 L0O C14 H4 SING N N 47 L0O C15 H5 SING N N 48 L0O C16 H6 SING N N 49 L0O C17 H7 SING N N 50 L0O C17 H8 SING N N 51 L0O C19 H9 SING N N 52 L0O C19 H10 SING N N 53 L0O C19 H11 SING N N 54 L0O C22 H12 SING N N 55 L0O C23 H13 SING N N 56 L0O C23 H14 SING N N 57 L0O C24 H15 SING N N 58 L0O C29 H16 SING N N 59 L0O C29 H17 SING N N 60 L0O C28 H18 SING N N 61 L0O C28 H19 SING N N 62 L0O C27 H20 SING N N 63 L0O C27 H21 SING N N 64 L0O C27 H22 SING N N 65 L0O C26 H23 SING N N 66 L0O C26 H24 SING N N 67 L0O C26 H25 SING N N 68 L0O C25 H26 SING N N 69 L0O C25 H27 SING N N 70 L0O C25 H28 SING N N 71 L0O C30 H29 SING N N 72 L0O C30 H30 SING N N 73 L0O C30 H31 SING N N 74 L0O C H33 SING N N 75 L0O C H34 SING N N 76 L0O C H35 SING N N 77 L0O C11 H36 SING N N 78 L0O C2 H37 SING N N 79 L0O C20 H38 SING N N 80 L0O C21 H39 SING N N 81 L0O C3 H40 SING N N 82 L0O C4 H41 SING N N 83 L0O C5 H42 SING N N 84 L0O C5 H43 SING N N 85 L0O C6 H44 SING N N 86 L0O C6 H45 SING N N 87 L0O C6 H46 SING N N 88 L0O C7 H47 SING N N 89 L0O C7 H48 SING N N 90 L0O C7 H49 SING N N 91 L0O C8 H50 SING N N 92 L0O C9 H51 SING N N 93 L0O O3 H52 SING N N 94 L0O O6 H53 SING N N 95 L0O O7 H54 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L0O InChI InChI 1.06 "InChI=1S/C31H53NO9/c1-9-25-20(5)29-31(6,41-29)12-10-23(34)17(2)14-21(11-13-33)28(19(4)24(35)16-26(36)39-25)40-30-27(37)22(32(7)8)15-18(3)38-30/h10,12,17-22,24-25,27-30,33,35,37H,9,11,13-16H2,1-8H3/b12-10+/t17-,18-,19+,20-,21+,22+,24-,25-,27-,28-,29+,30+,31+/m1/s1" L0O InChIKey InChI 1.06 GRMXJKDVOPKCDG-JZMZINANSA-N L0O SMILES_CANONICAL CACTVS 3.385 "CC[C@H]1OC(=O)C[C@@H](O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@@H]([C@H]2O)N(C)C)[C@@H](CCO)C[C@@H](C)C(=O)\C=C\[C@]3(C)O[C@H]3[C@@H]1C" L0O SMILES CACTVS 3.385 "CC[CH]1OC(=O)C[CH](O)[CH](C)[CH](O[CH]2O[CH](C)C[CH]([CH]2O)N(C)C)[CH](CCO)C[CH](C)C(=O)C=C[C]3(C)O[CH]3[CH]1C" L0O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]1[C@H]([C@H]2[C@@](O2)(/C=C/C(=O)[C@@H](C[C@@H]([C@@H]([C@H]([C@@H](CC(=O)O1)O)C)O[C@H]3[C@@H]([C@H](C[C@H](O3)C)N(C)C)O)CCO)C)C)C" L0O SMILES "OpenEye OEToolkits" 2.0.7 "CCC1C(C2C(O2)(C=CC(=O)C(CC(C(C(C(CC(=O)O1)O)C)OC3C(C(CC(O3)C)N(C)C)O)CCO)C)C)C" # _pdbx_chem_comp_identifier.comp_id L0O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{R},3~{R},7~{R},8~{S},9~{S},10~{R},12~{R},14~{E},16~{S})-9-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-3-ethyl-10-(2-hydroxyethyl)-2,8,12,16-tetramethyl-7-oxidanyl-4,17-dioxabicyclo[14.1.0]heptadec-14-ene-5,13-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L0O "Create component" 2022-06-09 PDBE L0O "Modify descriptor" 2022-08-22 RCSB L0O "Modify coordinates" 2026-04-14 RCSB L0O "Other modification" 2026-04-15 PDBJ L0O "Initial release" 2026-04-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L0O _pdbx_chem_comp_synonyms.name "(1~{S},2~{R},3~{R},7~{R},8~{S},9~{S},10~{R},12~{R},14~{E},16~{S})-9-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-3-ethyl-10-(2-hydroxyethyl)-2,8,12,16-tetramethyl-7-oxidanyl-4,17-dioxabicyclo[14.1.0]heptadec-14-ene-5,13-dione" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #