data_L0S
#
_chem_comp.id L0S
_chem_comp.name "methyl (R)-N-[(1E)-1-(diethylamino)ethylidene]-P-methylphosphonamidate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H19 N2 O2 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms A-232
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 206.222
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L0S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NTK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L0S C13 C1 C 0 1 N N N N N N -0.030 65.798 346.042 3.661 1.285 -0.715 C13 L0S 1
L0S C01 C2 C 0 1 N N N N N N -6.362 68.784 346.908 -2.692 -2.392 0.178 C01 L0S 2
L0S C02 C3 C 0 1 N N N N N N -5.805 68.275 348.235 -2.500 -1.233 -0.802 C02 L0S 3
L0S C04 C4 C 0 1 N N N N N N -6.363 65.825 348.190 -3.132 0.888 0.439 C04 L0S 4
L0S C05 C5 C 0 1 N N N N N N -6.700 65.522 349.648 -3.432 1.948 -0.623 C05 L0S 5
L0S C06 C6 C 0 1 N N N N N N -3.983 66.577 347.901 -0.781 0.237 0.155 C06 L0S 6
L0S C07 C7 C 0 1 N N N N N N -2.961 67.710 347.817 -0.377 1.474 0.914 C07 L0S 7
L0S N03 N1 N 0 1 N N N N N N -5.384 66.892 348.109 -2.107 -0.030 -0.064 N03 L0S 8
L0S N08 N2 N 0 1 N N N N N N -3.630 65.380 347.793 0.124 -0.574 -0.289 N08 L0S 9
L0S O11 O1 O 0 1 N N N N N N -1.215 65.322 348.722 1.804 0.043 1.526 O11 L0S 10
L0S O12 O2 O 0 1 N N N N N N -1.416 65.735 346.223 2.306 0.841 -0.815 O12 L0S 11
L0S P09 P1 P 0 1 N N R N N N -2.000 64.948 347.548 1.699 -0.336 0.100 P09 L0S 12
L0S H1 H1 H 0 1 N N N N N N 0.195 66.352 345.119 3.850 1.652 0.293 H1 L0S 13
L0S H2 H2 H 0 1 N N N N N N 0.429 66.312 346.899 4.332 0.453 -0.931 H2 L0S 14
L0S H3 H3 H 0 1 N N N N N N 0.376 64.779 345.966 3.834 2.087 -1.433 H3 L0S 15
L0S H4 H4 H 0 1 N N N N N N -6.676 69.832 347.020 -1.758 -2.579 0.707 H4 L0S 16
L0S H5 H5 H 0 1 N N N N N N -5.584 68.715 346.133 -3.471 -2.135 0.896 H5 L0S 17
L0S H6 H6 H 0 1 N N N N N N -7.227 68.171 346.614 -2.984 -3.287 -0.371 H6 L0S 18
L0S H7 H7 H 0 1 N N N N N N -4.942 68.892 348.526 -1.720 -1.490 -1.520 H7 L0S 19
L0S H8 H8 H 0 1 N N N N N N -6.585 68.348 349.007 -3.434 -1.046 -1.331 H8 L0S 20
L0S H9 H9 H 0 1 N N N N N N -7.278 66.132 347.663 -2.770 1.374 1.345 H9 L0S 21
L0S H10 H10 H 0 1 N N N N N N -5.953 64.920 347.717 -4.041 0.330 0.663 H10 L0S 22
L0S H11 H11 H 0 1 N N N N N N -7.443 64.712 349.693 -2.523 2.506 -0.847 H11 L0S 23
L0S H12 H12 H 0 1 N N N N N N -5.787 65.212 350.178 -3.793 1.462 -1.529 H12 L0S 24
L0S H13 H13 H 0 1 N N N N N N -7.112 66.424 350.124 -4.195 2.631 -0.249 H13 L0S 25
L0S H14 H14 H 0 1 N N N N N N -3.473 68.676 347.935 -0.384 1.263 1.983 H14 L0S 26
L0S H15 H15 H 0 1 N N N N N N -2.215 67.590 348.616 0.626 1.776 0.610 H15 L0S 27
L0S H16 H16 H 0 1 N N N N N N -2.459 67.679 346.839 -1.080 2.279 0.698 H16 L0S 28
L0S C14 C14 C 0 1 N Y N N N N -1.993 63.861 347.239 2.635 -1.874 -0.190 C14 L0S 29
L0S H17 H17 H 0 1 N N N N N N -2.371 63.242 348.066 3.682 -1.716 0.068 H17 L0S 30
L0S H18 H18 H 0 1 N N N N N N -2.636 63.726 346.357 2.224 -2.671 0.429 H18 L0S 31
L0S H19 H19 H 0 1 N N N N N N -0.965 63.557 346.993 2.558 -2.154 -1.241 H19 L0S 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L0S C13 O12 SING N N 1
L0S O12 P09 SING N N 2
L0S C01 C02 SING N N 3
L0S P09 N08 SING N N 4
L0S P09 O11 DOUB N N 5
L0S N08 C06 DOUB N N 6
L0S C07 C06 SING N N 7
L0S C06 N03 SING N N 8
L0S N03 C04 SING N N 9
L0S N03 C02 SING N N 10
L0S C04 C05 SING N N 11
L0S C13 H1 SING N N 12
L0S C13 H2 SING N N 13
L0S C13 H3 SING N N 14
L0S C01 H4 SING N N 15
L0S C01 H5 SING N N 16
L0S C01 H6 SING N N 17
L0S C02 H7 SING N N 18
L0S C02 H8 SING N N 19
L0S C04 H9 SING N N 20
L0S C04 H10 SING N N 21
L0S C05 H11 SING N N 22
L0S C05 H12 SING N N 23
L0S C05 H13 SING N N 24
L0S C07 H14 SING N N 25
L0S C07 H15 SING N N 26
L0S C07 H16 SING N N 27
L0S P09 C14 SING N N 28
L0S C14 H17 SING N N 29
L0S C14 H18 SING N N 30
L0S C14 H19 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L0S SMILES ACDLabs 12.01 "COP(/N=C(/N(CC)CC)C)(=O)C"
L0S InChI InChI 1.03 "InChI=1S/C8H19N2O2P/c1-6-10(7-2)8(3)9-13(5,11)12-4/h6-7H2,1-5H3/b9-8+/t13-/m1/s1"
L0S InChIKey InChI 1.03 YYUQHVXOVGFZEM-MMQHEFTJSA-N
L0S SMILES_CANONICAL CACTVS 3.385 "CCN(CC)C(C)=N[P@](C)(=O)OC"
L0S SMILES CACTVS 3.385 "CCN(CC)C(C)=N[P](C)(=O)OC"
L0S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)/C(=N/[P@@](=O)(C)OC)/C"
L0S SMILES "OpenEye OEToolkits" 2.0.7 "CCN(CC)C(=NP(=O)(C)OC)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L0S "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (R)-N-[(1E)-1-(diethylamino)ethylidene]-P-methylphosphonamidate"
L0S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N},~{N}-diethyl-~{N}'-[methoxy(methyl)phosphoryl]ethanimidamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L0S "Create component" 2019-01-30 RCSB
L0S "Modify leaving atom flag" 2019-02-01 RCSB
L0S "Initial release" 2020-07-01 RCSB
L0S "Modify synonyms" 2021-03-01 PDBE
L0S "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id L0S
_pdbx_chem_comp_synonyms.name A-232
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id L0S
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P09
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#