data_L1S # _chem_comp.id L1S _chem_comp.name "methyl 2-{4-[4-(7-carbamoyl-1H-benzimidazol-2-yl)benzene-1-carbonyl]piperazin-1-yl}pyrimidine-5-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-31 _chem_comp.pdbx_modified_date 2020-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 485.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L1S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6NTU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L1S O3 O1 O 0 1 N N N 0.510 38.252 8.610 -7.329 0.602 -2.537 O3 L1S 1 L1S C4 C1 C 0 1 Y N N -12.458 43.762 14.005 5.087 -0.259 0.396 C4 L1S 2 L1S C5 C2 C 0 1 N N N -10.503 42.622 12.986 2.747 -0.296 0.591 C5 L1S 3 L1S C6 C3 C 0 1 N N N -9.741 41.423 13.526 1.585 -1.182 1.052 C6 L1S 4 L1S N1 N1 N 0 1 N N N -11.173 43.347 14.071 3.997 -1.066 0.647 N1 L1S 5 L1S C7 C4 C 0 1 N N N -7.521 41.769 14.608 0.474 -2.842 -0.371 C7 L1S 6 L1S C8 C5 C 0 1 Y N N -6.846 40.894 13.604 -0.808 -2.141 -0.152 C8 L1S 7 L1S N2 N2 N 0 1 N N N -8.852 41.839 14.610 1.591 -2.415 0.251 N2 L1S 8 L1S C9 C6 C 0 1 Y N N -7.213 39.580 13.333 -1.690 -1.947 -1.218 C9 L1S 9 L1S C10 C7 C 0 1 Y N N -6.501 38.831 12.407 -2.884 -1.294 -1.013 C10 L1S 10 L1S C11 C8 C 0 1 Y N N -5.416 39.389 11.734 -3.214 -0.824 0.260 C11 L1S 11 L1S C12 C9 C 0 1 Y N N -4.605 38.603 10.809 -4.494 -0.117 0.479 C12 L1S 12 L1S N3 N3 N 0 1 Y N N -3.327 38.847 10.563 -5.434 0.129 -0.487 N3 L1S 13 L1S C13 C10 C 0 1 Y N N -2.954 37.867 9.656 -6.470 0.803 0.114 C13 L1S 14 L1S C14 C11 C 0 1 Y N N -1.716 37.568 9.074 -7.692 1.315 -0.344 C14 L1S 15 L1S C15 C12 C 0 1 N N N -0.548 38.488 9.234 -8.074 1.169 -1.761 C15 L1S 16 L1S N4 N4 N 0 1 N N N -0.663 39.528 10.071 -9.250 1.663 -2.197 N4 L1S 17 L1S C16 C13 C 0 1 Y N N -1.608 36.431 8.269 -8.543 1.964 0.549 C16 L1S 18 L1S C17 C14 C 0 1 Y N N -2.710 35.627 8.011 -8.186 2.102 1.879 C17 L1S 19 L1S C18 C15 C 0 1 Y N N -3.948 35.923 8.554 -6.988 1.603 2.342 C18 L1S 20 L1S C19 C16 C 0 1 Y N N -4.038 37.039 9.368 -6.116 0.948 1.467 C19 L1S 21 L1S N5 N5 N 0 1 Y N N -5.084 37.539 10.116 -4.904 0.363 1.627 N5 L1S 22 L1S C20 C17 C 0 1 Y N N -5.064 40.702 12.000 -2.332 -1.018 1.326 C20 L1S 23 L1S C21 C18 C 0 1 Y N N -5.770 41.448 12.920 -1.140 -1.676 1.123 C21 L1S 24 L1S O2 O2 O 0 1 N N N -6.852 42.349 15.426 0.522 -3.803 -1.114 O2 L1S 25 L1S C22 C19 C 0 1 N N N -9.585 42.479 15.708 2.849 -3.171 0.147 C22 L1S 26 L1S C23 C20 C 0 1 N N N -10.305 43.696 15.199 3.962 -2.207 -0.278 C23 L1S 27 L1S N N6 N 0 1 Y N N -13.152 43.418 12.911 4.891 1.030 0.155 N L1S 28 L1S C3 C21 C 0 1 Y N N -14.423 43.838 12.874 5.907 1.836 -0.090 C3 L1S 29 L1S N6 N7 N 0 1 Y N N -12.920 44.459 15.057 6.301 -0.795 0.407 N6 L1S 30 L1S C24 C22 C 0 1 Y N N -14.198 44.840 14.982 7.369 -0.057 0.171 C24 L1S 31 L1S C2 C23 C 0 1 Y N N -15.013 44.574 13.893 7.206 1.310 -0.093 C2 L1S 32 L1S C1 C24 C 0 1 N N N -16.433 45.021 13.830 8.371 2.173 -0.362 C1 L1S 33 L1S O1 O3 O 0 1 N N N -17.139 44.863 12.875 8.211 3.357 -0.584 O1 L1S 34 L1S O O4 O 0 1 N N N -16.835 45.608 14.957 9.612 1.648 -0.360 O L1S 35 L1S C C25 C 0 1 N N N -16.628 47.039 15.054 10.712 2.557 -0.633 C L1S 36 L1S H1 H1 H 0 1 N N N -9.798 43.299 12.481 2.570 0.035 -0.432 H1 L1S 37 L1S H2 H2 H 0 1 N N N -11.258 42.274 12.265 2.826 0.572 1.246 H2 L1S 38 L1S H3 H3 H 0 1 N N N -10.456 40.679 13.907 1.708 -1.429 2.106 H3 L1S 39 L1S H4 H4 H 0 1 N N N -9.144 40.977 12.717 0.642 -0.654 0.904 H4 L1S 40 L1S H5 H5 H 0 1 N N N -8.056 39.141 13.846 -1.435 -2.310 -2.202 H5 L1S 41 L1S H6 H6 H 0 1 N N N -6.789 37.810 12.207 -3.566 -1.144 -1.837 H6 L1S 42 L1S H7 H7 H 0 1 N N N -2.758 39.575 10.946 -5.378 -0.124 -1.422 H7 L1S 43 L1S H8 H8 H 0 1 N N N 0.112 40.144 10.212 -9.502 1.567 -3.128 H8 L1S 44 L1S H9 H9 H 0 1 N N N -1.524 39.688 10.554 -9.845 2.116 -1.578 H9 L1S 45 L1S H10 H10 H 0 1 N N N -0.651 36.173 7.840 -9.485 2.362 0.202 H10 L1S 46 L1S H11 H11 H 0 1 N N N -2.600 34.759 7.378 -8.854 2.607 2.561 H11 L1S 47 L1S H12 H12 H 0 1 N N N -4.811 35.307 8.350 -6.722 1.719 3.382 H12 L1S 48 L1S H14 H14 H 0 1 N N N -4.227 41.146 11.481 -2.587 -0.654 2.311 H14 L1S 49 L1S H15 H15 H 0 1 N N N -5.484 42.472 13.111 -0.459 -1.825 1.947 H15 L1S 50 L1S H16 H16 H 0 1 N N N -10.316 41.769 16.122 3.093 -3.609 1.114 H16 L1S 51 L1S H17 H17 H 0 1 N N N -8.877 42.777 16.495 2.741 -3.961 -0.596 H17 L1S 52 L1S H18 H18 H 0 1 N N N -9.566 44.442 14.870 3.767 -1.849 -1.289 H18 L1S 53 L1S H19 H19 H 0 1 N N N -10.917 44.119 16.009 4.921 -2.725 -0.253 H19 L1S 54 L1S H20 H20 H 0 1 N N N -15.019 43.592 12.008 5.740 2.885 -0.285 H20 L1S 55 L1S H21 H21 H 0 1 N N N -14.619 45.384 15.814 8.354 -0.499 0.182 H21 L1S 56 L1S H22 H22 H 0 1 N N N -17.000 47.399 16.025 10.582 2.999 -1.620 H22 L1S 57 L1S H23 H23 H 0 1 N N N -15.554 47.261 14.968 10.726 3.346 0.120 H23 L1S 58 L1S H24 H24 H 0 1 N N N -17.173 47.544 14.243 11.653 2.008 -0.601 H24 L1S 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L1S C17 C16 DOUB Y N 1 L1S C17 C18 SING Y N 2 L1S C16 C14 SING Y N 3 L1S C18 C19 DOUB Y N 4 L1S O3 C15 DOUB N N 5 L1S C14 C15 SING N N 6 L1S C14 C13 DOUB Y N 7 L1S C15 N4 SING N N 8 L1S C19 C13 SING Y N 9 L1S C19 N5 SING Y N 10 L1S C13 N3 SING Y N 11 L1S N5 C12 DOUB Y N 12 L1S N3 C12 SING Y N 13 L1S C12 C11 SING N N 14 L1S C11 C20 DOUB Y N 15 L1S C11 C10 SING Y N 16 L1S C20 C21 SING Y N 17 L1S C10 C9 DOUB Y N 18 L1S C3 N DOUB Y N 19 L1S C3 C2 SING Y N 20 L1S O1 C1 DOUB N N 21 L1S N C4 SING Y N 22 L1S C21 C8 DOUB Y N 23 L1S C5 C6 SING N N 24 L1S C5 N1 SING N N 25 L1S C9 C8 SING Y N 26 L1S C6 N2 SING N N 27 L1S C8 C7 SING N N 28 L1S C1 C2 SING N N 29 L1S C1 O SING N N 30 L1S C2 C24 DOUB Y N 31 L1S C4 N1 SING N N 32 L1S C4 N6 DOUB Y N 33 L1S N1 C23 SING N N 34 L1S C7 N2 SING N N 35 L1S C7 O2 DOUB N N 36 L1S N2 C22 SING N N 37 L1S O C SING N N 38 L1S C24 N6 SING Y N 39 L1S C23 C22 SING N N 40 L1S C5 H1 SING N N 41 L1S C5 H2 SING N N 42 L1S C6 H3 SING N N 43 L1S C6 H4 SING N N 44 L1S C9 H5 SING N N 45 L1S C10 H6 SING N N 46 L1S N3 H7 SING N N 47 L1S N4 H8 SING N N 48 L1S N4 H9 SING N N 49 L1S C16 H10 SING N N 50 L1S C17 H11 SING N N 51 L1S C18 H12 SING N N 52 L1S C20 H14 SING N N 53 L1S C21 H15 SING N N 54 L1S C22 H16 SING N N 55 L1S C22 H17 SING N N 56 L1S C23 H18 SING N N 57 L1S C23 H19 SING N N 58 L1S C3 H20 SING N N 59 L1S C24 H21 SING N N 60 L1S C H22 SING N N 61 L1S C H23 SING N N 62 L1S C H24 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L1S SMILES ACDLabs 12.01 "O=C(c5c4nc(c3ccc(C(N2CCN(c1ncc(cn1)C(OC)=O)CC2)=O)cc3)nc4ccc5)N" L1S InChI InChI 1.03 "InChI=1S/C25H23N7O4/c1-36-24(35)17-13-27-25(28-14-17)32-11-9-31(10-12-32)23(34)16-7-5-15(6-8-16)22-29-19-4-2-3-18(21(26)33)20(19)30-22/h2-8,13-14H,9-12H2,1H3,(H2,26,33)(H,29,30)" L1S InChIKey InChI 1.03 ASPUHGRKEUIGTD-UHFFFAOYSA-N L1S SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5C(N)=O)n4" L1S SMILES CACTVS 3.385 "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5C(N)=O)n4" L1S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N" L1S SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L1S "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2-{4-[4-(7-carbamoyl-1H-benzimidazol-2-yl)benzene-1-carbonyl]piperazin-1-yl}pyrimidine-5-carboxylate" L1S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl 2-[4-[4-(7-aminocarbonyl-1~{H}-benzimidazol-2-yl)phenyl]carbonylpiperazin-1-yl]pyrimidine-5-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L1S "Create component" 2019-01-31 RCSB L1S "Initial release" 2020-02-05 RCSB ##