data_L1W # _chem_comp.id L1W _chem_comp.name "~{N}-[3-[1-[[4-[5-[(4-hydroxyphenyl)methyl]-6-oxidanylidene-2-phenyl-1~{H}-pyrazin-3-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H38 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-15 _chem_comp.pdbx_modified_date 2019-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 654.757 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L1W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S9X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L1W CAA C1 C 0 1 N N N 1.480 -0.277 15.366 -6.383 0.796 0.918 CAA L1W 1 L1W CAB C2 C 0 1 N N N 2.423 -0.631 16.321 -7.215 -0.262 1.345 CAB L1W 2 L1W CAD C3 C 0 1 N N N 4.018 0.773 15.212 -5.601 -1.781 0.584 CAD L1W 3 L1W CAE C4 C 0 1 N N N 3.043 1.115 14.253 -4.806 -0.710 0.183 CAE L1W 4 L1W CAG C5 C 0 1 Y N N 5.335 1.233 15.235 -5.136 -3.166 0.384 CAG L1W 5 L1W CAH C6 C 0 1 Y N N 3.317 1.998 13.191 -3.490 -0.965 -0.449 CAH L1W 6 L1W CAI C7 C 0 1 Y N N 5.794 1.888 16.370 -5.156 -4.074 1.446 CAI L1W 7 L1W CAJ C8 C 0 1 Y N N 7.105 2.347 16.429 -4.720 -5.368 1.251 CAJ L1W 8 L1W CAK C9 C 0 1 Y N N 7.963 2.138 15.357 -4.264 -5.768 0.007 CAK L1W 9 L1W CAL C10 C 0 1 Y N N 7.507 1.471 14.223 -4.242 -4.874 -1.049 CAL L1W 10 L1W CAM C11 C 0 1 Y N N 6.199 1.011 14.164 -4.679 -3.579 -0.871 CAM L1W 11 L1W CAN C12 C 0 1 Y N N 3.887 3.248 13.426 -3.163 -0.352 -1.657 CAN L1W 12 L1W CAO C13 C 0 1 Y N N 4.168 4.115 12.375 -1.935 -0.593 -2.240 CAO L1W 13 L1W CAP C14 C 0 1 Y N N 3.870 3.769 11.062 -1.031 -1.442 -1.627 CAP L1W 14 L1W CAQ C15 C 0 1 Y N N 3.302 2.523 10.812 -1.350 -2.054 -0.428 CAQ L1W 15 L1W CAR C16 C 0 1 Y N N 3.024 1.652 11.870 -2.572 -1.816 0.167 CAR L1W 16 L1W CAS C17 C 0 1 N N N 4.182 4.663 10.026 0.308 -1.701 -2.269 CAS L1W 17 L1W CAU C18 C 0 1 N N N 2.263 6.007 9.661 1.538 -0.884 -0.351 CAU L1W 18 L1W CAV C19 C 0 1 N N N 1.145 6.409 8.718 2.440 0.248 0.146 CAV L1W 19 L1W CAW C20 C 0 1 N N N 1.720 6.886 7.383 3.758 0.222 -0.633 CAW L1W 20 L1W CAX C21 C 0 1 N N N 2.607 5.802 6.816 3.460 0.353 -2.129 CAX L1W 21 L1W CAY C22 C 0 1 N N N 3.678 5.467 7.841 2.528 -0.781 -2.560 CAY L1W 22 L1W CBA C23 C 0 1 N N N -0.525 6.704 6.180 4.287 2.644 -0.284 CBA L1W 23 L1W CBC C24 C 0 1 Y N N -0.413 8.363 4.856 6.316 2.528 0.616 CBC L1W 24 L1W CBD C25 C 0 1 Y N N 0.725 8.326 5.567 5.871 1.228 0.366 CBD L1W 25 L1W CBE C26 C 0 1 Y N N -0.628 9.296 3.934 7.564 2.736 1.183 CBE L1W 26 L1W CBF C27 C 0 1 Y N N 0.325 10.268 3.681 8.368 1.658 1.494 CBF L1W 27 L1W CBG C28 C 0 1 Y N N 1.499 10.249 4.420 7.931 0.363 1.241 CBG L1W 28 L1W CBH C29 C 0 1 Y N N 1.681 9.241 5.365 6.681 0.148 0.680 CBH L1W 29 L1W CBJ C30 C 0 1 N N N 2.185 12.466 4.407 8.747 -1.824 0.776 CBJ L1W 30 L1W CBK C31 C 0 1 N N N 3.317 13.407 3.990 9.703 -2.955 1.059 CBK L1W 31 L1W CBL C32 C 0 1 N N N 3.366 13.437 2.447 9.493 -4.069 0.032 CBL L1W 32 L1W CBP C33 C 0 1 N N N 0.224 -0.873 15.521 -6.829 2.223 1.110 CBP L1W 33 L1W CBQ C34 C 0 1 Y N N -0.843 -0.347 14.795 -5.772 3.155 0.576 CBQ L1W 34 L1W CBR C35 C 0 1 Y N N -0.904 -0.412 13.407 -4.759 3.598 1.406 CBR L1W 35 L1W CBS C36 C 0 1 Y N N -2.007 0.105 12.733 -3.786 4.448 0.918 CBS L1W 36 L1W CBT C37 C 0 1 Y N N -3.062 0.670 13.439 -3.826 4.858 -0.407 CBT L1W 37 L1W CBU C38 C 0 1 Y N N -3.012 0.719 14.826 -4.843 4.412 -1.238 CBU L1W 38 L1W CBV C39 C 0 1 Y N N -1.908 0.204 15.496 -5.814 3.562 -0.745 CBV L1W 39 L1W NAC N1 N 0 1 N N N 3.697 -0.100 16.244 -6.812 -1.539 1.172 NAC L1W 40 L1W NAF N2 N 0 1 N N N 1.808 0.571 14.362 -5.223 0.546 0.363 NAF L1W 41 L1W NAT N3 N 0 1 N N N 3.087 4.941 9.083 1.282 -0.713 -1.787 NAT L1W 42 L1W NAZ N4 N 0 1 N N N 0.652 7.287 6.408 4.604 1.338 -0.201 NAZ L1W 43 L1W NBB N5 N 0 1 N N N -1.187 7.357 5.241 5.299 3.388 0.200 NBB L1W 44 L1W NBI N6 N 0 1 N N N 2.433 11.168 4.166 8.752 -0.726 1.559 NBI L1W 45 L1W OBM O1 O 0 1 N N N 1.157 12.904 4.921 7.975 -1.902 -0.155 OBM L1W 46 L1W OBN O2 O 0 1 N N N -0.979 5.714 6.750 3.247 3.086 -0.734 OBN L1W 47 L1W OBO O3 O 0 1 N N N 2.142 -1.406 17.235 -8.292 -0.024 1.867 OBO L1W 48 L1W OBW O4 O 0 1 N N N -4.142 1.174 12.780 -2.870 5.695 -0.889 OBW L1W 49 L1W H2 H2 H 0 1 N N N 5.131 2.041 17.209 -5.511 -3.763 2.418 H2 L1W 50 L1W H3 H3 H 0 1 N N N 7.456 2.866 17.309 -4.735 -6.070 2.071 H3 L1W 51 L1W H4 H4 H 0 1 N N N 8.982 2.492 15.403 -3.924 -6.782 -0.139 H4 L1W 52 L1W H5 H5 H 0 1 N N N 8.173 1.311 13.388 -3.884 -5.194 -2.017 H5 L1W 53 L1W H6 H6 H 0 1 N N N 5.851 0.482 13.289 -4.661 -2.883 -1.696 H6 L1W 54 L1W H7 H7 H 0 1 N N N 4.114 3.548 14.438 -3.868 0.311 -2.136 H7 L1W 55 L1W H8 H8 H 0 1 N N N 4.625 5.072 12.582 -1.680 -0.119 -3.176 H8 L1W 56 L1W H9 H9 H 0 1 N N N 3.075 2.228 9.798 -0.640 -2.716 0.045 H9 L1W 57 L1W H10 H10 H 0 1 N N N 2.574 0.693 11.662 -2.820 -2.294 1.103 H10 L1W 58 L1W H11 H11 H 0 1 N N N 5.023 4.242 9.455 0.648 -2.703 -2.008 H11 L1W 59 L1W H12 H12 H 0 1 N N N 4.489 5.616 10.481 0.214 -1.620 -3.352 H12 L1W 60 L1W H13 H13 H 0 1 N N N 2.898 6.883 9.859 2.029 -1.842 -0.181 H13 L1W 61 L1W H14 H14 H 0 1 N N N 1.825 5.650 10.605 0.592 -0.859 0.192 H14 L1W 62 L1W H15 H15 H 0 1 N N N 0.562 7.223 9.173 1.943 1.205 -0.011 H15 L1W 63 L1W H16 H16 H 0 1 N N N 0.490 5.543 8.542 2.642 0.113 1.209 H16 L1W 64 L1W H17 H17 H 0 1 N N N 2.347 7.767 7.584 4.274 -0.719 -0.445 H17 L1W 65 L1W H18 H18 H 0 1 N N N 2.006 4.906 6.601 2.980 1.312 -2.322 H18 L1W 66 L1W H19 H19 H 0 1 N N N 3.080 6.157 5.889 4.392 0.293 -2.692 H19 L1W 67 L1W H20 H20 H 0 1 N N N 4.354 4.710 7.418 2.303 -0.683 -3.622 H20 L1W 68 L1W H21 H21 H 0 1 N N N 4.248 6.378 8.074 3.015 -1.740 -2.380 H21 L1W 69 L1W H22 H22 H 0 1 N N N -1.554 9.296 3.378 7.907 3.741 1.380 H22 L1W 70 L1W H23 H23 H 0 1 N N N 0.158 11.023 2.927 9.341 1.822 1.935 H23 L1W 71 L1W H24 H24 H 0 1 N N N 2.596 9.198 5.936 6.341 -0.859 0.484 H24 L1W 72 L1W H25 H25 H 0 1 N N N 4.274 13.039 4.387 10.727 -2.589 0.995 H25 L1W 73 L1W H26 H26 H 0 1 N N N 3.124 14.418 4.377 9.518 -3.344 2.060 H26 L1W 74 L1W H27 H27 H 0 1 N N N 4.173 14.108 2.118 8.468 -4.434 0.096 H27 L1W 75 L1W H28 H28 H 0 1 N N N 3.555 12.422 2.066 9.677 -3.679 -0.969 H28 L1W 76 L1W H29 H29 H 0 1 N N N 2.404 13.802 2.057 10.184 -4.887 0.236 H29 L1W 77 L1W H30 H30 H 0 1 N N N -0.041 -0.806 16.587 -7.763 2.387 0.572 H30 L1W 78 L1W H31 H31 H 0 1 N N N 0.326 -1.930 15.234 -6.982 2.417 2.171 H31 L1W 79 L1W H32 H32 H 0 1 N N N -0.095 -0.864 12.852 -4.728 3.279 2.438 H32 L1W 80 L1W H33 H33 H 0 1 N N N -2.043 0.067 11.654 -2.995 4.794 1.568 H33 L1W 81 L1W H34 H34 H 0 1 N N N -3.828 1.156 15.382 -4.876 4.730 -2.270 H34 L1W 82 L1W H35 H35 H 0 1 N N N -1.878 0.233 16.575 -6.603 3.211 -1.393 H35 L1W 83 L1W H37 H37 H 0 1 N N N -2.096 7.135 4.889 5.320 4.356 0.249 H37 L1W 84 L1W H38 H38 H 0 1 N N N 3.319 10.890 3.796 9.323 -0.691 2.342 H38 L1W 85 L1W H39 H39 H 0 1 N N N -4.765 1.519 13.409 -2.100 5.241 -1.259 H39 L1W 86 L1W H1 H1 H 0 1 N N N 4.385 -0.343 16.928 -7.374 -2.275 1.460 H1 L1W 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L1W CBL CBK SING N N 1 L1W CBF CBE DOUB Y N 2 L1W CBF CBG SING Y N 3 L1W CBE CBC SING Y N 4 L1W CBK CBJ SING N N 5 L1W NBI CBJ SING N N 6 L1W NBI CBG SING N N 7 L1W CBJ OBM DOUB N N 8 L1W CBG CBH DOUB Y N 9 L1W CBC NBB SING N N 10 L1W CBC CBD DOUB Y N 11 L1W NBB CBA SING N N 12 L1W CBH CBD SING Y N 13 L1W CBD NAZ SING N N 14 L1W CBA NAZ SING N N 15 L1W CBA OBN DOUB N N 16 L1W NAZ CAW SING N N 17 L1W CAX CAW SING N N 18 L1W CAX CAY SING N N 19 L1W CAW CAV SING N N 20 L1W CAY NAT SING N N 21 L1W CAV CAU SING N N 22 L1W NAT CAU SING N N 23 L1W NAT CAS SING N N 24 L1W CAS CAP SING N N 25 L1W CAQ CAP DOUB Y N 26 L1W CAQ CAR SING Y N 27 L1W CAP CAO SING Y N 28 L1W CAR CAH DOUB Y N 29 L1W CAO CAN DOUB Y N 30 L1W CBS CBR DOUB Y N 31 L1W CBS CBT SING Y N 32 L1W OBW CBT SING N N 33 L1W CAH CAN SING Y N 34 L1W CAH CAE SING N N 35 L1W CBR CBQ SING Y N 36 L1W CBT CBU DOUB Y N 37 L1W CAM CAL DOUB Y N 38 L1W CAM CAG SING Y N 39 L1W CAL CAK SING Y N 40 L1W CAE NAF SING N N 41 L1W CAE CAD DOUB N N 42 L1W NAF CAA DOUB N N 43 L1W CBQ CBV DOUB Y N 44 L1W CBQ CBP SING N N 45 L1W CBU CBV SING Y N 46 L1W CAD CAG SING N N 47 L1W CAD NAC SING N N 48 L1W CAG CAI DOUB Y N 49 L1W CAK CAJ DOUB Y N 50 L1W CAA CBP SING N N 51 L1W CAA CAB SING N N 52 L1W NAC CAB SING N N 53 L1W CAB OBO DOUB N N 54 L1W CAI CAJ SING Y N 55 L1W CAI H2 SING N N 56 L1W CAJ H3 SING N N 57 L1W CAK H4 SING N N 58 L1W CAL H5 SING N N 59 L1W CAM H6 SING N N 60 L1W CAN H7 SING N N 61 L1W CAO H8 SING N N 62 L1W CAQ H9 SING N N 63 L1W CAR H10 SING N N 64 L1W CAS H11 SING N N 65 L1W CAS H12 SING N N 66 L1W CAU H13 SING N N 67 L1W CAU H14 SING N N 68 L1W CAV H15 SING N N 69 L1W CAV H16 SING N N 70 L1W CAW H17 SING N N 71 L1W CAX H18 SING N N 72 L1W CAX H19 SING N N 73 L1W CAY H20 SING N N 74 L1W CAY H21 SING N N 75 L1W CBE H22 SING N N 76 L1W CBF H23 SING N N 77 L1W CBH H24 SING N N 78 L1W CBK H25 SING N N 79 L1W CBK H26 SING N N 80 L1W CBL H27 SING N N 81 L1W CBL H28 SING N N 82 L1W CBL H29 SING N N 83 L1W CBP H30 SING N N 84 L1W CBP H31 SING N N 85 L1W CBR H32 SING N N 86 L1W CBS H33 SING N N 87 L1W CBU H34 SING N N 88 L1W CBV H35 SING N N 89 L1W NBB H37 SING N N 90 L1W NBI H38 SING N N 91 L1W OBW H39 SING N N 92 L1W NAC H1 SING N N 93 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L1W InChI InChI 1.03 "InChI=1S/C39H38N6O4/c1-2-35(47)40-29-14-17-32-34(23-29)45(39(49)42-32)30-18-20-44(21-19-30)24-26-8-12-28(13-9-26)36-37(27-6-4-3-5-7-27)43-38(48)33(41-36)22-25-10-15-31(46)16-11-25/h3-17,23,30,46H,2,18-22,24H2,1H3,(H,40,47)(H,42,49)(H,43,48)" L1W InChIKey InChI 1.03 LMPCSGMPKCSYTR-UHFFFAOYSA-N L1W SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(O)cc6)c7ccccc7)c2c1" L1W SMILES CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(O)cc6)c7ccccc7)c2c1" L1W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(cc6)O)c7ccccc7" L1W SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(NC(=O)C(=N5)Cc6ccc(cc6)O)c7ccccc7" # _pdbx_chem_comp_identifier.comp_id L1W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[1-[[4-[5-[(4-hydroxyphenyl)methyl]-6-oxidanylidene-2-phenyl-1~{H}-pyrazin-3-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L1W "Create component" 2019-07-15 PDBE L1W "Other modification" 2019-07-16 EBI L1W "Initial release" 2019-10-16 RCSB ##