data_L24
#
_chem_comp.id L24
_chem_comp.name "[[[2-AMINO-5,6,7,8-TETRAHYDRO-4-HYDROXY-PYRIDO[2,3-D]PYRIMIDIN-6-YL]-ETHYL]-PHENYL]-CARBONYL-GLUTAMIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N5 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms LY249543
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-12-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 443.453
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L24
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DIA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L24 N2A N2A N 0 1 N N N -3.653 50.768 19.040 -1.062 0.693 10.048 N2A L24 1
L24 N1 N1 N 0 1 Y N N -2.097 52.165 17.948 -1.447 0.281 7.781 N1 L24 2
L24 C2 C2 C 0 1 Y N N -2.942 51.906 19.029 -0.593 0.570 8.751 C2 L24 3
L24 N3 N3 N 0 1 Y N N -3.064 52.797 20.087 0.698 0.739 8.514 N3 L24 4
L24 C4 C4 C 0 1 Y N N -2.371 53.946 20.115 1.185 0.631 7.281 C4 L24 5
L24 O4A O4A O 0 1 N N N -2.471 54.743 21.051 2.508 0.807 7.047 O4A L24 6
L24 C5 C5 C 0 1 Y N N -1.443 54.231 18.937 0.317 0.334 6.236 C5 L24 7
L24 C6 C6 C 0 1 Y N N -1.358 53.331 17.912 -1.029 0.161 6.523 C6 L24 8
L24 N7 N7 N 0 1 N N N -0.541 53.582 16.835 -1.937 -0.140 5.520 N7 L24 9
L24 C8 C8 C 0 1 N N N 0.213 54.729 16.645 -1.528 0.022 4.118 C8 L24 10
L24 C9 C9 C 0 1 N N S 0.629 55.366 17.963 -0.125 -0.577 3.962 C9 L24 11
L24 C10 C10 C 0 1 N N N -0.561 55.491 18.916 0.850 0.213 4.835 C10 L24 12
L24 C11 C11 C 0 1 N N N 1.327 56.728 17.794 0.311 -0.492 2.498 C11 L24 13
L24 C12 C12 C 0 1 N N N 2.362 56.934 18.888 -0.665 -1.284 1.627 C12 L24 14
L24 C1B C1B C 0 1 Y N N 2.598 58.341 19.243 -0.234 -1.200 0.186 C1B L24 15
L24 C2B C2B C 0 1 Y N N 3.305 59.154 18.386 0.632 -2.147 -0.329 C2B L24 16
L24 C3B C3B C 0 1 Y N N 3.585 60.468 18.738 1.030 -2.076 -1.648 C3B L24 17
L24 C4B C4B C 0 1 Y N N 3.151 60.969 19.955 0.555 -1.046 -2.463 C4B L24 18
L24 C5B C5B C 0 1 Y N N 2.427 60.158 20.813 -0.318 -0.095 -1.936 C5B L24 19
L24 C6B C6B C 0 1 Y N N 2.148 58.839 20.457 -0.713 -0.180 -0.617 C6B L24 20
L24 C7B C7B C 0 1 N N N 3.539 62.391 20.358 0.978 -0.964 -3.877 C7B L24 21
L24 O7B O7B O 0 1 N N N 4.487 62.947 19.799 1.740 -1.794 -4.333 O7B L24 22
L24 N N N 0 1 N N N 2.999 62.860 21.483 0.518 0.030 -4.661 N L24 23
L24 CA CA C 0 1 N N S 3.367 64.163 22.053 0.937 0.112 -6.063 CA L24 24
L24 CB CB C 0 1 N N N 2.116 65.043 22.220 -0.176 0.755 -6.891 CB L24 25
L24 CG CG C 0 1 N N N 1.375 65.347 20.914 -1.445 -0.093 -6.787 CG L24 26
L24 CD CD C 0 1 N N N 0.131 66.192 21.133 -2.542 0.539 -7.603 CD L24 27
L24 OE1 OE1 O 0 1 N N N -0.932 65.612 21.445 -2.331 1.564 -8.206 OE1 L24 28
L24 OE2 OE2 O 0 1 N N N 0.212 67.435 20.995 -3.754 -0.035 -7.659 OE2 L24 29
L24 C C C 0 1 N N N 4.068 64.012 23.406 2.186 0.948 -6.166 C L24 30
L24 O O O 0 1 N N N 3.749 63.037 24.123 2.989 0.729 -7.043 O L24 31
L24 OXT OXT O 0 1 N N N 4.924 64.866 23.734 2.408 1.935 -5.284 OXT L24 32
L24 HN21 1HN2 H 0 0 N N N -4.270 50.578 19.829 -2.006 0.575 10.235 HN21 L24 33
L24 HN22 2HN2 H 0 0 N N N -3.014 49.980 18.925 -0.447 0.900 10.768 HN22 L24 34
L24 HO4 HO4 H 0 1 N N N -1.980 55.556 21.070 2.925 -0.061 7.135 HO4 L24 35
L24 HN7 HN7 H 0 1 N N N -1.118 53.472 16.001 -2.829 -0.454 5.740 HN7 L24 36
L24 H81 1H8 H 0 1 N N N 1.097 54.528 15.996 -1.507 1.081 3.861 H81 L24 37
L24 H82 2H8 H 0 1 N N N -0.320 55.460 15.993 -2.228 -0.501 3.466 H82 L24 38
L24 H9 H9 H 0 1 N N N 1.383 54.675 18.407 -0.137 -1.620 4.280 H9 L24 39
L24 H101 1H10 H 0 0 N N N -1.166 56.398 18.682 0.985 1.209 4.413 H101 L24 40
L24 H102 2H10 H 0 0 N N N -0.222 55.758 19.944 1.811 -0.300 4.858 H102 L24 41
L24 H111 1H11 H 0 0 N N N 1.769 56.844 16.777 0.318 0.550 2.181 H111 L24 42
L24 H112 2H11 H 0 0 N N N 0.594 57.567 17.752 1.312 -0.910 2.393 H112 L24 43
L24 H121 1H12 H 0 0 N N N 2.092 56.344 19.794 -0.672 -2.327 1.944 H121 L24 44
L24 H122 2H12 H 0 0 N N N 3.321 56.435 18.614 -1.666 -0.866 1.732 H122 L24 45
L24 H2B H2B H 0 1 N N N 3.647 58.752 17.417 0.998 -2.942 0.301 H2B L24 46
L24 H3B H3B H 0 1 N N N 4.153 61.115 18.049 1.707 -2.815 -2.050 H3B L24 47
L24 H5B H5B H 0 1 N N N 2.073 60.561 21.776 -0.689 0.703 -2.561 H5B L24 48
L24 H6B H6B H 0 1 N N N 1.570 58.189 21.136 -1.389 0.555 -0.208 H6B L24 49
L24 HN HN H 0 1 N N N 2.314 62.230 21.901 -0.089 0.692 -4.298 HN L24 50
L24 HA HA H 0 1 N N N 4.077 64.648 21.344 1.138 -0.890 -6.441 HA L24 51
L24 HB1 1HB H 0 1 N N N 1.420 64.591 22.965 -0.378 1.757 -6.513 HB1 L24 52
L24 HB2 2HB H 0 1 N N N 2.374 65.989 22.749 0.134 0.815 -7.934 HB2 L24 53
L24 HG1 1HG H 0 1 N N N 2.055 65.820 20.167 -1.244 -1.096 -7.164 HG1 L24 54
L24 HG2 2HG H 0 1 N N N 1.130 64.408 20.363 -1.756 -0.154 -5.744 HG2 L24 55
L24 HE2 HE2 H 0 1 N N N -0.565 67.963 21.131 -4.458 0.371 -8.183 HE2 L24 56
L24 HXT HXT H 0 1 N N N 5.358 64.772 24.573 3.209 2.472 -5.350 HXT L24 57
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L24 N2A C2 SING N N 1
L24 N2A HN21 SING N N 2
L24 N2A HN22 SING N N 3
L24 N1 C2 DOUB Y N 4
L24 N1 C6 SING Y N 5
L24 C2 N3 SING Y N 6
L24 N3 C4 DOUB Y N 7
L24 C4 O4A SING N N 8
L24 C4 C5 SING Y N 9
L24 O4A HO4 SING N N 10
L24 C5 C6 DOUB Y N 11
L24 C5 C10 SING N N 12
L24 C6 N7 SING N N 13
L24 N7 C8 SING N N 14
L24 N7 HN7 SING N N 15
L24 C8 C9 SING N N 16
L24 C8 H81 SING N N 17
L24 C8 H82 SING N N 18
L24 C9 C10 SING N N 19
L24 C9 C11 SING N N 20
L24 C9 H9 SING N N 21
L24 C10 H101 SING N N 22
L24 C10 H102 SING N N 23
L24 C11 C12 SING N N 24
L24 C11 H111 SING N N 25
L24 C11 H112 SING N N 26
L24 C12 C1B SING N N 27
L24 C12 H121 SING N N 28
L24 C12 H122 SING N N 29
L24 C1B C2B DOUB Y N 30
L24 C1B C6B SING Y N 31
L24 C2B C3B SING Y N 32
L24 C2B H2B SING N N 33
L24 C3B C4B DOUB Y N 34
L24 C3B H3B SING N N 35
L24 C4B C5B SING Y N 36
L24 C4B C7B SING N N 37
L24 C5B C6B DOUB Y N 38
L24 C5B H5B SING N N 39
L24 C6B H6B SING N N 40
L24 C7B O7B DOUB N N 41
L24 C7B N SING N N 42
L24 N CA SING N N 43
L24 N HN SING N N 44
L24 CA CB SING N N 45
L24 CA C SING N N 46
L24 CA HA SING N N 47
L24 CB CG SING N N 48
L24 CB HB1 SING N N 49
L24 CB HB2 SING N N 50
L24 CG CD SING N N 51
L24 CG HG1 SING N N 52
L24 CG HG2 SING N N 53
L24 CD OE1 DOUB N N 54
L24 CD OE2 SING N N 55
L24 OE2 HE2 SING N N 56
L24 C O DOUB N N 57
L24 C OXT SING N N 58
L24 OXT HXT SING N N 59
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L24 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)c1ccc(cc1)CCC3Cc2c(nc(nc2NC3)N)O)CCC(=O)O"
L24 SMILES_CANONICAL CACTVS 3.341 "Nc1nc(O)c2C[C@H](CCc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)CNc2n1"
L24 SMILES CACTVS 3.341 "Nc1nc(O)c2C[CH](CCc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)CNc2n1"
L24 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CC[C@H]2Cc3c(nc(nc3O)N)NC2)C(=O)N[C@@H](CCC(=O)O)C(=O)O"
L24 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CCC2Cc3c(nc(nc3O)N)NC2)C(=O)NC(CCC(=O)O)C(=O)O"
L24 InChI InChI 1.03 "InChI=1S/C21H25N5O6/c22-21-25-17-14(19(30)26-21)9-12(10-23-17)2-1-11-3-5-13(6-4-11)18(29)24-15(20(31)32)7-8-16(27)28/h3-6,12,15H,1-2,7-10H2,(H,24,29)(H,27,28)(H,31,32)(H4,22,23,25,26,30)/t12-,15-/m0/s1"
L24 InChIKey InChI 1.03 ZUQBAQVRAURMCL-WFASDCNBSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L24 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(4-{2-[(6S)-2-amino-4-hydroxy-5,6,7,8-tetrahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}phenyl)carbonyl]-L-glutamic acid"
L24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[4-[2-[(6S)-2-amino-4-hydroxy-5,6,7,8-tetrahydropyrido[5,6-e]pyrimidin-6-yl]ethyl]phenyl]carbonylamino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L24 "Create component" 1999-12-14 EBI
L24 "Modify descriptor" 2011-06-04 RCSB
L24 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id L24
_pdbx_chem_comp_synonyms.name LY249543
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##