data_L2D # _chem_comp.id L2D _chem_comp.name "{2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H26 Fe N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-16 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.311 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L2D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DCX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L2D CAK CAK C 0 1 Y N N -1.384 -6.684 -31.344 -1.384 -6.684 -31.344 CAK L2D 1 L2D CAG CAG C 0 1 Y N N -0.572 -7.726 -31.752 -0.572 -7.726 -31.752 CAG L2D 2 L2D CAE CAE C 0 1 Y N N -0.174 -7.816 -33.079 -0.174 -7.816 -33.079 CAE L2D 3 L2D CAI CAI C 0 1 Y N N -0.599 -6.857 -33.981 -0.599 -6.857 -33.981 CAI L2D 4 L2D NAU NAU N 0 1 Y N N -1.379 -5.880 -33.565 -1.379 -5.880 -33.565 NAU L2D 5 L2D CAY CAY C 0 1 Y N N -1.797 -5.764 -32.293 -1.797 -5.764 -32.293 CAY L2D 6 L2D CAS CAS C 0 1 N N N -2.687 -4.571 -31.935 -2.687 -4.571 -31.935 CAS L2D 7 L2D N N N 0 1 N N N -2.933 -4.031 -33.248 -2.933 -4.031 -33.248 N L2D 8 L2D CA CA C 0 1 N N N -3.952 -4.931 -33.878 -3.952 -4.931 -33.878 CA L2D 9 L2D C C C 0 1 N N N -3.960 -4.929 -35.439 -3.960 -4.929 -35.439 C L2D 10 L2D OXT OXT O 0 1 N N N -2.916 -4.569 -36.050 -2.916 -4.569 -36.050 OXT L2D 11 L2D O O O 0 1 N N N -4.970 -5.420 -36.002 -4.970 -5.420 -36.002 O L2D 12 L2D CBA CBA C 0 1 N N R -3.274 -2.607 -33.064 -3.274 -2.607 -33.064 CBA L2D 13 L2D CAO CAO C 0 1 N N N -4.716 -2.464 -32.551 -4.716 -2.464 -32.551 CAO L2D 14 L2D CAM CAM C 0 1 N N N -5.015 -0.980 -32.388 -5.015 -0.980 -32.388 CAM L2D 15 L2D CAN CAN C 0 1 N N N -4.861 -0.258 -33.741 -4.861 -0.258 -33.741 CAN L2D 16 L2D CAP CAP C 0 1 N N N -3.423 -0.458 -34.237 -3.423 -0.458 -34.237 CAP L2D 17 L2D CBB CBB C 0 1 N N R -3.164 -1.957 -34.399 -3.164 -1.957 -34.399 CBB L2D 18 L2D NBD NBD N 0 1 N N N -1.765 -2.145 -34.867 -1.765 -2.145 -34.867 NBD L2D 19 L2D CAR CAR C 0 1 N N N -0.877 -1.342 -33.995 -0.877 -1.342 -33.995 CAR L2D 20 L2D CAX CAX C 0 1 N N N 0.249 -2.191 -33.372 0.249 -2.191 -33.372 CAX L2D 21 L2D OAD OAD O 0 1 N N N 0.141 -3.440 -33.381 0.141 -3.440 -33.381 OAD L2D 22 L2D OAB OAB O 0 1 N N N 1.195 -1.567 -32.854 1.195 -1.567 -32.854 OAB L2D 23 L2D CAT CAT C 0 1 N N N -1.593 -1.675 -36.253 -1.593 -1.675 -36.253 CAT L2D 24 L2D CAZ CAZ C 0 1 Y N N -0.301 -2.319 -36.745 -0.301 -2.319 -36.745 CAZ L2D 25 L2D CAL CAL C 0 1 Y N N 0.575 -1.658 -37.596 0.575 -1.658 -37.596 CAL L2D 26 L2D CAH CAH C 0 1 Y N N 1.730 -2.314 -38.002 1.730 -2.314 -38.002 CAH L2D 27 L2D CAF CAF C 0 1 Y N N 1.961 -3.615 -37.562 1.961 -3.615 -37.562 CAF L2D 28 L2D CAJ CAJ C 0 1 Y N N 1.039 -4.228 -36.725 1.039 -4.228 -36.725 CAJ L2D 29 L2D NAV NAV N 0 1 Y N N -0.044 -3.569 -36.349 -0.044 -3.569 -36.349 NAV L2D 30 L2D FE FE FE 0 0 N N N -1.360 -4.134 -34.676 -1.360 -4.134 -34.676 FE L2D 31 L2D H1 H1 H 0 1 N N N -1.688 -6.590 -30.312 -1.688 -6.590 -30.312 H1 L2D 32 L2D H2 H2 H 0 1 N N N -0.248 -8.469 -31.039 -0.248 -8.469 -31.039 H2 L2D 33 L2D H3 H3 H 0 1 N N N 0.461 -8.627 -33.404 0.461 -8.627 -33.404 H3 L2D 34 L2D H4 H4 H 0 1 N N N -0.294 -6.909 -35.016 -0.294 -6.909 -35.016 H4 L2D 35 L2D H5 H5 H 0 1 N N N -2.162 -3.851 -31.290 -2.162 -3.851 -31.290 H5 L2D 36 L2D H6 H6 H 0 1 N N N -3.619 -4.891 -31.445 -3.619 -4.891 -31.445 H6 L2D 37 L2D H7 H7 H 0 1 N N N -4.947 -4.615 -33.531 -4.947 -4.615 -33.531 H7 L2D 38 L2D H8 H8 H 0 1 N N N -3.755 -5.959 -33.539 -3.755 -5.959 -33.539 H8 L2D 39 L2D H9 H9 H 0 1 N N N -2.581 -2.135 -32.352 -2.581 -2.135 -32.352 H9 L2D 40 L2D H10 H10 H 0 1 N N N -5.415 -2.908 -33.275 -5.415 -2.908 -33.275 H10 L2D 41 L2D H11 H11 H 0 1 N N N -4.819 -2.974 -31.582 -4.819 -2.974 -31.582 H11 L2D 42 L2D H12 H12 H 0 1 N N N -4.313 -0.545 -31.661 -4.313 -0.545 -31.661 H12 L2D 43 L2D H13 H13 H 0 1 N N N -6.045 -0.854 -32.023 -6.045 -0.854 -32.023 H13 L2D 44 L2D H14 H14 H 0 1 N N N -5.064 0.816 -33.614 -5.064 0.816 -33.614 H14 L2D 45 L2D H15 H15 H 0 1 N N N -5.568 -0.681 -34.470 -5.568 -0.681 -34.470 H15 L2D 46 L2D H16 H16 H 0 1 N N N -2.717 -0.037 -33.506 -2.717 -0.037 -33.506 H16 L2D 47 L2D H17 H17 H 0 1 N N N -3.292 0.047 -35.205 -3.292 0.047 -35.205 H17 L2D 48 L2D H18 H18 H 0 1 N N N -3.880 -2.395 -35.110 -3.880 -2.395 -35.110 H18 L2D 49 L2D H19 H19 H 0 1 N N N -0.425 -0.538 -34.594 -0.425 -0.538 -34.594 H19 L2D 50 L2D H20 H20 H 0 1 N N N -1.478 -0.902 -33.186 -1.478 -0.902 -33.186 H20 L2D 51 L2D H21 H21 H 0 1 N N N -1.510 -0.578 -36.279 -1.510 -0.578 -36.279 H21 L2D 52 L2D H22 H22 H 0 1 N N N -2.442 -1.994 -36.875 -2.442 -1.994 -36.875 H22 L2D 53 L2D H23 H23 H 0 1 N N N 0.363 -0.655 -37.935 0.363 -0.655 -37.935 H23 L2D 54 L2D H24 H24 H 0 1 N N N 2.440 -1.822 -38.650 2.440 -1.822 -38.650 H24 L2D 55 L2D H25 H25 H 0 1 N N N 2.851 -4.143 -37.870 2.851 -4.143 -37.870 H25 L2D 56 L2D H26 H26 H 0 1 N N N 1.205 -5.239 -36.382 1.205 -5.239 -36.382 H26 L2D 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L2D CAH CAL DOUB Y N 1 L2D CAH CAF SING Y N 2 L2D CAL CAZ SING Y N 3 L2D CAF CAJ DOUB Y N 4 L2D CAZ NAV DOUB Y N 5 L2D CAZ CAT SING N N 6 L2D CAJ NAV SING Y N 7 L2D NAV FE SING N N 8 L2D CAT NBD SING N N 9 L2D OXT C SING N N 10 L2D OXT FE SING N N 11 L2D O C DOUB N N 12 L2D C CA SING N N 13 L2D NBD FE SING N N 14 L2D NBD CBB SING N N 15 L2D NBD CAR SING N N 16 L2D FE NAU SING N N 17 L2D FE OAD SING N N 18 L2D FE N SING N N 19 L2D CBB CAP SING N N 20 L2D CBB CBA SING N N 21 L2D CAP CAN SING N N 22 L2D CAR CAX SING N N 23 L2D CAI NAU DOUB Y N 24 L2D CAI CAE SING Y N 25 L2D CA N SING N N 26 L2D CAN CAM SING N N 27 L2D NAU CAY SING Y N 28 L2D OAD CAX SING N N 29 L2D CAX OAB DOUB N N 30 L2D N CBA SING N N 31 L2D N CAS SING N N 32 L2D CAE CAG DOUB Y N 33 L2D CBA CAO SING N N 34 L2D CAO CAM SING N N 35 L2D CAY CAS SING N N 36 L2D CAY CAK DOUB Y N 37 L2D CAG CAK SING Y N 38 L2D CAK H1 SING N N 39 L2D CAG H2 SING N N 40 L2D CAE H3 SING N N 41 L2D CAI H4 SING N N 42 L2D CAS H5 SING N N 43 L2D CAS H6 SING N N 44 L2D CA H7 SING N N 45 L2D CA H8 SING N N 46 L2D CBA H9 SING N N 47 L2D CAO H10 SING N N 48 L2D CAO H11 SING N N 49 L2D CAM H12 SING N N 50 L2D CAM H13 SING N N 51 L2D CAN H14 SING N N 52 L2D CAN H15 SING N N 53 L2D CAP H16 SING N N 54 L2D CAP H17 SING N N 55 L2D CBB H18 SING N N 56 L2D CAR H19 SING N N 57 L2D CAR H20 SING N N 58 L2D CAT H21 SING N N 59 L2D CAT H22 SING N N 60 L2D CAL H23 SING N N 61 L2D CAH H24 SING N N 62 L2D CAF H25 SING N N 63 L2D CAJ H26 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L2D SMILES ACDLabs 12.01 "O=C6O[Fe]2587OC(=O)CN8(Cc1n2cccc1)C3CCCCC3N7(Cc4ccccn45)C6" L2D InChI InChI 1.03 "InChI=1S/C22H28N4O4.Fe/c27-21(28)15-25(13-17-7-3-5-11-23-17)19-9-1-2-10-20(19)26(16-22(29)30)14-18-8-4-6-12-24-18;/h3-8,11-12,19-20H,1-2,9-10,13-16H2,(H,27,28)(H,29,30);/q;+2/p-2/t19-,20-;/m1./s1" L2D InChIKey InChI 1.03 RHFVCFXUQWXGET-GZJHNZOKSA-L L2D SMILES_CANONICAL CACTVS 3.370 "O=C1CN|23Cc4ccccn4|[Fe]|5|6|2(O1)OC(=O)CN|5(Cc7ccccn|67)[C@@H]8CCCC[C@@H]38" L2D SMILES CACTVS 3.370 "O=C1CN|23Cc4ccccn4|[Fe]|5|6|2(O1)OC(=O)CN|5(Cc7ccccn|67)[CH]8CCCC[CH]38" L2D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1CC[C@@H]2[C@@H](C1)[N]34CC5=[N]([Fe]367([N]2(CC8=CC=CC=[N]68)CC(=O)O7)OC(=O)C4)C=CC=C5" L2D SMILES "OpenEye OEToolkits" 1.7.6 "C1CCC2C(C1)[N]34CC5=[N]([Fe]367([N]2(CC8=CC=CC=[N]68)CC(=O)O7)OC(=O)C4)C=CC=C5" # _pdbx_chem_comp_identifier.comp_id L2D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "{2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L2D "Create component" 2012-02-16 RCSB L2D "Modify synonyms" 2012-03-14 RCSB L2D "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L2D _pdbx_chem_comp_synonyms.name "Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##