data_L2F # _chem_comp.id L2F _chem_comp.name "N-(1-naphthylsulfonyl)-(L)-isoleucyl-(L)-tryptophanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},3~{S})-~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-oxidanyl-propan-2-yl]-3-methyl-2-(naphthalen-1-ylsulfonylamino)pentanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.618 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A4W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L2F N1 N1 N 0 1 Y N N N N N 10.177 -23.945 -0.295 4.658 2.441 -1.179 N1 L2F 1 L2F C4 C1 C 0 1 N N N N N N 14.820 -22.665 -1.157 1.128 -1.593 -0.521 C4 L2F 2 L2F C5 C2 C 0 1 N N S N N N 13.249 -20.768 -1.372 3.543 -1.747 -0.236 C5 L2F 3 L2F C6 C3 C 0 1 N N N N N N 11.929 -20.706 -0.597 4.608 -0.872 0.428 C6 L2F 4 L2F C7 C4 C 0 1 Y N N N N N 11.377 -22.053 -0.243 4.442 0.555 -0.029 C7 L2F 5 L2F C8 C5 C 0 1 Y N N N N N 10.457 -22.775 -0.946 5.061 1.138 -1.067 C8 L2F 6 L2F C10 C6 C 0 1 Y N N N N N 10.981 -24.979 1.846 3.042 3.885 0.152 C10 L2F 7 L2F C13 C7 C 0 1 Y N N N N N 12.548 -22.655 2.008 2.688 1.568 1.655 C13 L2F 8 L2F C15 C8 C 0 1 N N N N N N 13.795 -19.373 -1.618 3.789 -3.213 0.128 C15 L2F 9 L2F C17 C9 C 0 1 Y N N N N N 13.140 -26.689 0.134 -1.903 2.306 -0.046 C17 L2F 10 L2F C20 C10 C 0 1 Y N N N N N 13.219 -28.162 -2.244 -4.392 1.503 0.879 C20 L2F 11 L2F C21 C11 C 0 1 Y N N N N N 13.271 -28.901 -3.448 -5.654 1.078 1.327 C21 L2F 12 L2F C22 C12 C 0 1 Y N N N N N 14.465 -29.151 -4.063 -6.205 -0.056 0.812 C22 L2F 13 L2F C24 C13 C 0 1 Y N N N N N 15.647 -27.965 -2.358 -4.311 -0.423 -0.612 C24 L2F 14 L2F C26 C14 C 0 1 N N N N N N 17.950 -23.318 1.048 -2.031 -2.020 1.598 C26 L2F 15 L2F N N2 N 0 1 N N N N N N 14.235 -21.572 -0.653 2.216 -1.343 0.234 N L2F 16 L2F C C15 C 0 1 N N N N N N 19.255 -21.984 -1.115 -1.095 -4.830 1.239 C L2F 17 L2F O O1 O 0 1 N N N N N N 14.643 -23.050 -2.310 1.256 -2.067 -1.630 O L2F 18 L2F C1 C16 C 0 1 N N N N N N 17.812 -22.401 -1.303 -0.789 -3.711 0.242 C1 L2F 19 L2F C11 C17 C 0 1 Y N N N N N 11.841 -24.777 2.915 2.179 3.865 1.225 C11 L2F 20 L2F C12 C18 C 0 1 Y N N N N N 12.619 -23.628 2.993 2.005 2.708 1.973 C12 L2F 21 L2F C14 C19 C 0 1 Y N N N N N 11.693 -22.832 0.922 3.567 1.566 0.571 C14 L2F 22 L2F C16 C20 C 0 1 Y N N N N N 14.342 -26.900 -0.484 -2.451 1.170 -0.556 C16 L2F 23 L2F C18 C21 C 0 1 Y N N N N N 11.972 -27.189 -0.416 -2.570 3.052 0.925 C18 L2F 24 L2F C19 C22 C 0 1 Y N N N N N 11.996 -27.901 -1.578 -3.791 2.668 1.386 C19 L2F 25 L2F C2 C23 C 0 1 N N S N N N 17.064 -22.628 0.010 -0.675 -2.380 0.988 C2 L2F 26 L2F C23 C24 C 0 1 Y N N N N N 15.651 -28.689 -3.516 -5.535 -0.803 -0.154 C23 L2F 27 L2F C25 C25 C 0 1 Y N N N N N 14.433 -27.669 -1.686 -3.711 0.742 -0.104 C25 L2F 28 L2F C3 C26 C 0 1 N N S N N N 15.758 -23.420 -0.213 -0.247 -1.283 0.012 C3 L2F 29 L2F C9 C27 C 0 1 Y N N N N N 10.920 -24.005 0.857 3.747 2.736 -0.190 C9 L2F 30 L2F N2 N3 N 0 1 N N N N N N 16.039 -24.768 -0.697 -1.199 -1.220 -1.100 N2 L2F 31 L2F O1 O2 O 0 1 N N N N N N 12.882 -18.586 -2.353 3.833 -3.350 1.549 O1 L2F 32 L2F O2 O3 O 0 1 N N N N N N 16.879 -26.950 0.049 -2.521 -0.031 -2.812 O2 L2F 33 L2F O3 O4 O 0 1 N N N N N N 15.398 -25.622 1.516 -0.356 0.918 -2.000 O3 L2F 34 L2F S S1 S 0 1 N N N N N N 15.755 -26.082 0.208 -1.585 0.241 -1.778 S L2F 35 L2F HN1 H1 H 0 1 N N N N N N 9.534 -24.644 -0.608 4.971 3.065 -1.852 HN1 L2F 36 L2F H2 H2 H 0 1 N N N N N N 13.050 -21.236 -2.347 3.597 -1.627 -1.318 H2 L2F 37 L2F H9 H3 H 0 1 N N N N N N 12.098 -20.144 0.333 4.496 -0.922 1.511 H9 L2F 38 L2F H10 H4 H 0 1 N N N N N N 11.188 -20.178 -1.215 5.599 -1.230 0.148 H10 L2F 39 L2F H11 H5 H 0 1 N N N N N N 10.014 -22.467 -1.882 5.771 0.651 -1.719 H11 L2F 40 L2F H12 H6 H 0 1 N N N N N N 10.374 -25.870 1.784 3.170 4.790 -0.424 H12 L2F 41 L2F H15 H7 H 0 1 N N N N N N 13.153 -21.763 2.082 2.547 0.672 2.241 H15 L2F 42 L2F H16 H8 H 0 1 N N N N N N 14.736 -19.451 -2.182 2.981 -3.826 -0.271 H16 L2F 43 L2F H17 H9 H 0 1 N N N N N N 13.987 -18.888 -0.650 4.737 -3.539 -0.299 H17 L2F 44 L2F H20 H10 H 0 1 N N N N N N 13.102 -26.129 1.057 -0.934 2.633 -0.394 H20 L2F 45 L2F H23 H11 H 0 1 N N N N N N 12.357 -29.272 -3.887 -6.184 1.648 2.075 H23 L2F 46 L2F H24 H12 H 0 1 N N N N N N 14.485 -29.714 -4.984 -7.175 -0.380 1.158 H24 L2F 47 L2F H26 H13 H 0 1 N N N N N N 16.582 -27.613 -1.948 -3.804 -1.012 -1.362 H26 L2F 48 L2F H28 H14 H 0 1 N N N N N N 17.380 -23.465 1.978 -1.981 -1.021 2.032 H28 L2F 49 L2F H29 H15 H 0 1 N N N N N N 18.277 -24.294 0.660 -2.796 -2.040 0.821 H29 L2F 50 L2F H27 H16 H 0 1 N N N N N N 18.831 -22.691 1.253 -2.283 -2.741 2.375 H27 L2F 51 L2F H8 H17 H 0 1 N N N N N N 14.488 -21.288 0.272 2.120 -0.895 1.090 H8 L2F 52 L2F H4 H18 H 0 1 N N N N N N 19.727 -21.840 -2.098 -1.176 -5.778 0.707 H4 L2F 53 L2F H5 H19 H 0 1 N N N N N N 19.293 -21.042 -0.548 -0.291 -4.893 1.972 H5 L2F 54 L2F H3 H20 H 0 1 N N N N N N 19.794 -22.767 -0.562 -2.035 -4.617 1.747 H3 L2F 55 L2F H6 H21 H 0 1 N N N N N N 17.293 -21.612 -1.867 0.151 -3.924 -0.267 H6 L2F 56 L2F H7 H22 H 0 1 N N N N N N 17.793 -23.337 -1.880 -1.593 -3.648 -0.492 H7 L2F 57 L2F H13 H23 H 0 1 N N N N N N 11.907 -25.521 3.695 1.633 4.759 1.489 H13 L2F 58 L2F H14 H24 H 0 1 N N N N N N 13.287 -23.492 3.831 1.325 2.709 2.811 H14 L2F 59 L2F H21 H25 H 0 1 N N N N N N 11.030 -27.013 0.082 -2.111 3.947 1.317 H21 L2F 60 L2F H22 H26 H 0 1 N N N N N N 11.071 -28.271 -1.996 -4.298 3.258 2.135 H22 L2F 61 L2F H H27 H 0 1 N N N N N N 16.787 -21.642 0.411 0.067 -2.471 1.781 H L2F 62 L2F H25 H28 H 0 1 N N N N N N 16.587 -28.903 -4.010 -5.994 -1.699 -0.546 H25 L2F 63 L2F H1 H29 H 0 1 N N N N N N 15.253 -23.500 0.761 -0.228 -0.323 0.529 H1 L2F 64 L2F H19 H30 H 0 1 N N N N N N 15.503 -24.883 -1.533 -1.603 -2.034 -1.439 H19 L2F 65 L2F H18 H31 H 0 1 N N N N N N 13.249 -17.721 -2.492 3.986 -4.255 1.853 H18 L2F 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L2F C22 C23 DOUB Y N 1 L2F C22 C21 SING Y N 2 L2F C23 C24 SING Y N 3 L2F C21 C20 DOUB Y N 4 L2F C24 C25 DOUB Y N 5 L2F O1 C15 SING N N 6 L2F O C4 DOUB N N 7 L2F C20 C25 SING Y N 8 L2F C20 C19 SING Y N 9 L2F C25 C16 SING Y N 10 L2F C15 C5 SING N N 11 L2F C19 C18 DOUB Y N 12 L2F C5 N SING N N 13 L2F C5 C6 SING N N 14 L2F C1 C SING N N 15 L2F C1 C2 SING N N 16 L2F C4 N SING N N 17 L2F C4 C3 SING N N 18 L2F C8 N1 SING Y N 19 L2F C8 C7 DOUB Y N 20 L2F N2 C3 SING N N 21 L2F N2 S SING N N 22 L2F C6 C7 SING N N 23 L2F C16 C17 DOUB Y N 24 L2F C16 S SING N N 25 L2F C18 C17 SING Y N 26 L2F N1 C9 SING Y N 27 L2F C7 C14 SING Y N 28 L2F C3 C2 SING N N 29 L2F C2 C26 SING N N 30 L2F O2 S DOUB N N 31 L2F S O3 DOUB N N 32 L2F C9 C14 DOUB Y N 33 L2F C9 C10 SING Y N 34 L2F C14 C13 SING Y N 35 L2F C10 C11 DOUB Y N 36 L2F C13 C12 DOUB Y N 37 L2F C11 C12 SING Y N 38 L2F N1 HN1 SING N N 39 L2F C5 H2 SING N N 40 L2F C6 H9 SING N N 41 L2F C6 H10 SING N N 42 L2F C8 H11 SING N N 43 L2F C10 H12 SING N N 44 L2F C13 H15 SING N N 45 L2F C15 H16 SING N N 46 L2F C15 H17 SING N N 47 L2F C17 H20 SING N N 48 L2F C21 H23 SING N N 49 L2F C22 H24 SING N N 50 L2F C24 H26 SING N N 51 L2F C26 H28 SING N N 52 L2F C26 H29 SING N N 53 L2F C26 H27 SING N N 54 L2F N H8 SING N N 55 L2F C H4 SING N N 56 L2F C H5 SING N N 57 L2F C H3 SING N N 58 L2F C1 H6 SING N N 59 L2F C1 H7 SING N N 60 L2F C11 H13 SING N N 61 L2F C12 H14 SING N N 62 L2F C18 H21 SING N N 63 L2F C19 H22 SING N N 64 L2F C2 H SING N N 65 L2F C23 H25 SING N N 66 L2F C3 H1 SING N N 67 L2F N2 H19 SING N N 68 L2F O1 H18 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L2F InChI InChI 1.06 "InChI=1S/C27H31N3O4S/c1-3-18(2)26(30-35(33,34)25-14-8-10-19-9-4-5-12-23(19)25)27(32)29-21(17-31)15-20-16-28-24-13-7-6-11-22(20)24/h4-14,16,18,21,26,28,30-31H,3,15,17H2,1-2H3,(H,29,32)/t18-,21-,26-/m0/s1" L2F InChIKey InChI 1.06 WGQRDHFZEVLIFE-JCWFFFCVSA-N L2F SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N[S](=O)(=O)c1cccc2ccccc12)C(=O)N[C@H](CO)Cc3c[nH]c4ccccc34" L2F SMILES CACTVS 3.385 "CC[CH](C)[CH](N[S](=O)(=O)c1cccc2ccccc12)C(=O)N[CH](CO)Cc3c[nH]c4ccccc34" L2F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)N[C@@H](Cc1c[nH]c2c1cccc2)CO)NS(=O)(=O)c3cccc4c3cccc4" L2F SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)NC(Cc1c[nH]c2c1cccc2)CO)NS(=O)(=O)c3cccc4c3cccc4" # _pdbx_chem_comp_identifier.comp_id L2F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-oxidanyl-propan-2-yl]-3-methyl-2-(naphthalen-1-ylsulfonylamino)pentanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L2F _pdbx_chem_comp_synonyms.name "(2~{S},3~{S})-~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-oxidanyl-propan-2-yl]-3-methyl-2-(naphthalen-1-ylsulfonylamino)pentanamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L2F "Create component" 2022-06-14 PDBE L2F "Modify descriptor" 2022-08-22 RCSB L2F "Initial release" 2023-07-05 RCSB L2F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id L2F _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #