data_L2N # _chem_comp.id L2N _chem_comp.name "~{N}-[2-methoxy-5-(4-methylpiperazin-1-yl)sulfonyl-phenyl]-3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrole-1-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-16 _chem_comp.pdbx_modified_date 2020-12-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.573 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L2N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SA3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L2N N1 N1 N 0 1 N N N 3.564 -13.695 -23.934 0.705 1.927 0.148 N1 L2N 1 L2N O2 O1 O 0 1 N N N 3.602 -14.562 -26.317 -0.630 3.914 -1.259 O2 L2N 2 L2N O3 O2 O 0 1 N N N 5.551 -17.451 -20.933 -5.021 0.420 1.894 O3 L2N 3 L2N C4 C1 C 0 1 N N N 4.058 -7.848 -24.371 5.832 -2.172 -0.940 C4 L2N 4 L2N C5 C2 C 0 1 N N N 3.392 -8.211 -25.690 5.170 -3.294 -0.151 C5 L2N 5 L2N C6 C3 C 0 1 N N N 2.786 -9.604 -25.715 4.219 -2.689 0.895 C6 L2N 6 L2N C7 C4 C 0 1 N N N 3.651 -10.620 -24.964 3.113 -1.864 0.232 C7 L2N 7 L2N C8 C5 C 0 1 Y N N 3.161 -10.696 -23.546 3.568 -0.431 0.120 C8 L2N 8 L2N C9 C6 C 0 1 Y N N 2.915 -11.741 -22.689 2.809 0.693 0.106 C9 L2N 9 L2N C10 C7 C 0 1 N N N 3.157 -13.189 -22.729 1.343 0.740 0.170 C10 L2N 10 L2N C11 C8 C 0 1 Y N N 3.920 -15.060 -24.100 -0.694 1.969 0.120 C11 L2N 11 L2N C12 C9 C 0 1 Y N N 4.031 -15.483 -25.396 -1.349 2.973 -0.591 C12 L2N 12 L2N C13 C10 C 0 1 N N N 3.757 -14.893 -27.693 -1.368 4.913 -1.966 C13 L2N 13 L2N C14 C11 C 0 1 Y N N 4.489 -16.749 -25.697 -2.733 3.010 -0.615 C14 L2N 14 L2N C15 C12 C 0 1 Y N N 4.849 -17.635 -24.682 -3.463 2.052 0.066 C15 L2N 15 L2N N2 N2 N 0 1 N N N 4.069 -19.285 -21.615 -4.013 -1.414 0.586 N2 L2N 16 L2N N N3 N 0 1 Y N N 2.418 -11.233 -21.512 3.649 1.786 0.023 N L2N 17 L2N C C13 C 0 1 Y N N 2.324 -9.889 -21.595 4.926 1.366 -0.024 C L2N 18 L2N O O3 O 0 1 N N N 2.556 -7.168 -22.664 7.049 -0.800 0.571 O L2N 19 L2N C1 C14 C 0 1 N N N 1.757 -9.105 -20.447 6.146 2.247 -0.107 C1 L2N 20 L2N C16 C15 C 0 1 Y N N 4.714 -17.212 -23.366 -2.814 1.056 0.771 C16 L2N 21 L2N C17 C16 C 0 1 N N N 2.822 -18.822 -20.970 -3.064 -2.534 0.495 C17 L2N 22 L2N C18 C17 C 0 1 N N N 2.284 -19.936 -20.093 -2.701 -2.745 -0.979 C18 L2N 23 L2N C19 C18 C 0 1 N N N 1.634 -22.258 -19.969 -3.625 -3.283 -3.151 C19 L2N 24 L2N C2 C19 C 0 1 Y N N 2.808 -9.498 -22.832 4.924 -0.006 0.018 C2 L2N 25 L2N C20 C20 C 0 1 N N N 3.384 -21.558 -21.476 -4.758 -1.695 -1.718 C20 L2N 26 L2N C21 C21 C 0 1 N N N 3.849 -20.505 -22.401 -5.206 -1.441 -0.274 C21 L2N 27 L2N C22 C22 C 0 1 Y N N 4.251 -15.957 -23.056 -1.433 1.009 0.795 C22 L2N 28 L2N C3 C23 C 0 1 N N N 3.081 -8.107 -23.249 6.024 -0.967 -0.055 C3 L2N 29 L2N N3 N4 N 0 1 N N N 2.114 -21.176 -20.855 -3.932 -2.908 -1.765 N3 L2N 30 L2N O1 O4 O 0 1 N N N 3.089 -13.836 -21.688 0.704 -0.293 0.242 O1 L2N 31 L2N O4 O5 O 0 1 N N N 6.318 -19.113 -22.582 -2.904 -0.665 2.660 O4 L2N 32 L2N S S1 S 0 1 N N N 5.273 -18.268 -22.048 -3.750 -0.161 1.636 S L2N 33 L2N H1 H1 H 0 1 N N N 3.612 -13.083 -24.724 1.215 2.752 0.156 H1 L2N 34 L2N H2 H2 H 0 1 N N N 4.958 -8.465 -24.228 6.802 -2.510 -1.306 H2 L2N 35 L2N H3 H3 H 0 1 N N N 4.340 -6.785 -24.379 5.200 -1.904 -1.786 H3 L2N 36 L2N H4 H4 H 0 1 N N N 4.147 -8.148 -26.487 4.606 -3.932 -0.830 H4 L2N 37 L2N H5 H5 H 0 1 N N N 2.591 -7.482 -25.885 5.935 -3.885 0.352 H5 L2N 38 L2N H6 H6 H 0 1 N N N 1.792 -9.567 -25.245 3.765 -3.494 1.473 H6 L2N 39 L2N H7 H7 H 0 1 N N N 2.685 -9.928 -26.761 4.789 -2.047 1.566 H7 L2N 40 L2N H8 H8 H 0 1 N N N 3.565 -11.607 -25.441 2.909 -2.260 -0.763 H8 L2N 41 L2N H9 H9 H 0 1 N N N 4.702 -10.297 -24.978 2.208 -1.913 0.837 H9 L2N 42 L2N H10 H10 H 0 1 N N N 3.374 -14.070 -28.314 -1.995 5.465 -1.266 H10 L2N 43 L2N H11 H11 H 0 1 N N N 4.823 -15.053 -27.914 -0.676 5.600 -2.454 H11 L2N 44 L2N H12 H12 H 0 1 N N N 3.195 -15.812 -27.915 -1.997 4.436 -2.718 H12 L2N 45 L2N H13 H13 H 0 1 N N N 4.570 -17.057 -26.729 -3.243 3.787 -1.165 H13 L2N 46 L2N H14 H14 H 0 1 N N N 5.222 -18.622 -24.913 -4.542 2.083 0.046 H14 L2N 47 L2N H15 H15 H 0 1 N N N 2.164 -11.778 -20.713 3.363 2.713 0.002 H15 L2N 48 L2N H16 H16 H 0 1 N N N 0.668 -9.007 -20.571 6.488 2.490 0.899 H16 L2N 49 L2N H17 H17 H 0 1 N N N 1.973 -9.628 -19.504 6.937 1.722 -0.643 H17 L2N 50 L2N H18 H18 H 0 1 N N N 2.215 -8.105 -20.425 5.895 3.165 -0.638 H18 L2N 51 L2N H19 H19 H 0 1 N N N 3.031 -17.935 -20.354 -2.164 -2.299 1.063 H19 L2N 52 L2N H20 H20 H 0 1 N N N 2.080 -18.567 -21.741 -3.525 -3.438 0.891 H20 L2N 53 L2N H21 H21 H 0 1 N N N 2.989 -20.116 -19.268 -2.148 -1.880 -1.345 H21 L2N 54 L2N H22 H22 H 0 1 N N N 1.310 -19.631 -19.683 -2.085 -3.639 -1.077 H22 L2N 55 L2N H23 H23 H 0 1 N N N 0.680 -21.960 -19.509 -3.082 -2.471 -3.636 H23 L2N 56 L2N H24 H24 H 0 1 N N N 1.486 -23.175 -20.558 -3.012 -4.184 -3.157 H24 L2N 57 L2N H25 H25 H 0 1 N N N 2.379 -22.444 -19.181 -4.553 -3.472 -3.690 H25 L2N 58 L2N H26 H26 H 0 1 N N N 3.245 -22.495 -22.035 -5.635 -1.827 -2.352 H26 L2N 59 L2N H27 H27 H 0 1 N N N 4.139 -21.708 -20.691 -4.177 -0.844 -2.074 H27 L2N 60 L2N H28 H28 H 0 1 N N N 3.087 -20.321 -23.173 -5.873 -2.240 0.049 H28 L2N 61 L2N H29 H29 H 0 1 N N N 4.789 -20.816 -22.881 -5.722 -0.483 -0.214 H29 L2N 62 L2N H30 H30 H 0 1 N N N 4.140 -15.657 -22.024 -0.928 0.226 1.343 H30 L2N 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L2N C13 O2 SING N N 1 L2N O2 C12 SING N N 2 L2N C6 C5 SING N N 3 L2N C6 C7 SING N N 4 L2N C14 C12 DOUB Y N 5 L2N C14 C15 SING Y N 6 L2N C5 C4 SING N N 7 L2N C12 C11 SING Y N 8 L2N C7 C8 SING N N 9 L2N C15 C16 DOUB Y N 10 L2N C4 C3 SING N N 11 L2N C11 N1 SING N N 12 L2N C11 C22 DOUB Y N 13 L2N N1 C10 SING N N 14 L2N C8 C2 SING Y N 15 L2N C8 C9 DOUB Y N 16 L2N C16 C22 SING Y N 17 L2N C16 S SING N N 18 L2N C3 C2 SING N N 19 L2N C3 O DOUB N N 20 L2N C2 C DOUB Y N 21 L2N C10 C9 SING N N 22 L2N C10 O1 DOUB N N 23 L2N C9 N SING Y N 24 L2N O4 S DOUB N N 25 L2N C21 N2 SING N N 26 L2N C21 C20 SING N N 27 L2N S N2 SING N N 28 L2N S O3 DOUB N N 29 L2N N2 C17 SING N N 30 L2N C N SING Y N 31 L2N C C1 SING N N 32 L2N C20 N3 SING N N 33 L2N C17 C18 SING N N 34 L2N N3 C18 SING N N 35 L2N N3 C19 SING N N 36 L2N N1 H1 SING N N 37 L2N C4 H2 SING N N 38 L2N C4 H3 SING N N 39 L2N C5 H4 SING N N 40 L2N C5 H5 SING N N 41 L2N C6 H6 SING N N 42 L2N C6 H7 SING N N 43 L2N C7 H8 SING N N 44 L2N C7 H9 SING N N 45 L2N C13 H10 SING N N 46 L2N C13 H11 SING N N 47 L2N C13 H12 SING N N 48 L2N C14 H13 SING N N 49 L2N C15 H14 SING N N 50 L2N N H15 SING N N 51 L2N C1 H16 SING N N 52 L2N C1 H17 SING N N 53 L2N C1 H18 SING N N 54 L2N C17 H19 SING N N 55 L2N C17 H20 SING N N 56 L2N C18 H21 SING N N 57 L2N C18 H22 SING N N 58 L2N C19 H23 SING N N 59 L2N C19 H24 SING N N 60 L2N C19 H25 SING N N 61 L2N C20 H26 SING N N 62 L2N C20 H27 SING N N 63 L2N C21 H28 SING N N 64 L2N C21 H29 SING N N 65 L2N C22 H30 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L2N InChI InChI 1.03 "InChI=1S/C23H30N4O5S/c1-15-21-17(6-4-5-7-19(21)28)22(24-15)23(29)25-18-14-16(8-9-20(18)32-3)33(30,31)27-12-10-26(2)11-13-27/h8-9,14,24H,4-7,10-13H2,1-3H3,(H,25,29)" L2N InChIKey InChI 1.03 AFNYOROEWXANDC-UHFFFAOYSA-N L2N SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1NC(=O)c2[nH]c(C)c3C(=O)CCCCc23)[S](=O)(=O)N4CCN(C)CC4" L2N SMILES CACTVS 3.385 "COc1ccc(cc1NC(=O)c2[nH]c(C)c3C(=O)CCCCc23)[S](=O)(=O)N4CCN(C)CC4" L2N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2c(c([nH]1)C(=O)Nc3cc(ccc3OC)S(=O)(=O)N4CCN(CC4)C)CCCCC2=O" L2N SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2c(c([nH]1)C(=O)Nc3cc(ccc3OC)S(=O)(=O)N4CCN(CC4)C)CCCCC2=O" # _pdbx_chem_comp_identifier.comp_id L2N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-methoxy-5-(4-methylpiperazin-1-yl)sulfonyl-phenyl]-3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrole-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L2N "Create component" 2019-07-16 PDBE L2N "Initial release" 2020-12-09 RCSB ##