data_L2R # _chem_comp.id L2R _chem_comp.name "(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N8 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-14 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.533 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L2R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A4M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L2R CAB C1 C 0 1 Y N N 30.265 17.503 11.989 -3.686 -1.263 -0.516 CAB L2R 1 L2R CAA C2 C 0 1 Y N N 31.475 17.979 12.516 -4.340 -2.446 -0.790 CAA L2R 2 L2R CAC C3 C 0 1 Y N N 32.588 18.132 11.675 -5.687 -2.578 -0.503 CAC L2R 3 L2R CAD C4 C 0 1 Y N N 32.502 17.828 10.307 -6.387 -1.525 0.060 CAD L2R 4 L2R CAE C5 C 0 1 Y N N 31.286 17.355 9.793 -5.744 -0.336 0.337 CAE L2R 5 L2R CAF C6 C 0 1 Y N N 30.163 17.198 10.621 -4.385 -0.199 0.056 CAF L2R 6 L2R CAG C7 C 0 1 N N N 28.986 16.755 10.131 -3.689 1.073 0.351 CAG L2R 7 L2R NAH N1 N 0 1 N N N 28.260 15.823 10.751 -4.089 1.980 1.198 NAH L2R 8 L2R NAI N2 N 0 1 N N N 27.138 15.635 10.017 -3.156 3.026 1.185 NAI L2R 9 L2R CAJ C8 C 0 1 N N N 27.216 16.437 8.961 -2.193 2.701 0.299 CAJ L2R 10 L2R SAL S1 S 0 1 N N N 25.987 16.493 7.700 -0.817 3.642 -0.089 SAL L2R 11 L2R NAK N3 N 0 1 N N N 28.338 17.172 9.017 -2.505 1.496 -0.219 NAK L2R 12 L2R CAM C9 C 0 1 N N N 28.664 18.142 7.940 -1.726 0.766 -1.222 CAM L2R 13 L2R CAN C10 C 0 1 N N N 29.658 17.461 7.005 -0.631 -0.045 -0.527 CAN L2R 14 L2R CB C11 C 0 1 N N N 29.418 17.921 5.569 0.170 -0.822 -1.573 CB L2R 15 L2R CA C12 C 0 1 N N S 30.240 17.032 4.594 1.325 -1.556 -0.889 CA L2R 16 L2R C C13 C 0 1 N N N 29.591 15.610 4.362 2.023 -2.440 -1.890 C L2R 17 L2R OXT O1 O 0 1 N N N 30.358 14.645 4.393 1.343 -3.415 -2.513 OXT L2R 18 L2R O O2 O 0 1 N N N 28.350 15.488 4.202 3.194 -2.270 -2.133 O L2R 19 L2R N N4 N 0 1 N N N 30.540 17.781 3.335 2.279 -0.576 -0.353 N L2R 20 L2R CAW C14 C 0 1 N N N 29.513 17.663 2.260 3.329 -1.238 0.433 CAW L2R 21 L2R CAX C15 C 0 1 Y N N 28.921 19.034 1.852 2.747 -1.734 1.732 CAX L2R 22 L2R CBA C16 C 0 1 Y N N 27.687 19.496 2.149 2.289 -2.978 1.970 CBA L2R 23 L2R NBB N5 N 0 1 Y N N 27.577 20.714 1.615 1.853 -2.998 3.267 NBB L2R 24 L2R CAZ C17 C 0 1 Y N N 28.724 20.991 1.005 2.060 -1.765 3.777 CAZ L2R 25 L2R NAY N6 N 0 1 Y N N 29.564 19.952 1.138 2.599 -1.015 2.855 NAY L2R 26 L2R CAU C18 C 0 1 N N N 31.932 17.585 2.864 2.861 0.236 -1.430 CAU L2R 27 L2R CAV C19 C 0 1 Y N N 32.173 16.108 2.462 3.494 1.471 -0.842 CAV L2R 28 L2R CBD C20 C 0 1 Y N N 32.973 15.249 3.082 4.797 1.624 -0.539 CBD L2R 29 L2R NBF N7 N 0 1 Y N N 32.869 14.085 2.425 4.940 2.888 -0.034 NBF L2R 30 L2R CBE C21 C 0 1 Y N N 32.017 14.249 1.412 3.719 3.464 -0.046 CBE L2R 31 L2R NBC N8 N 0 1 Y N N 31.575 15.503 1.459 2.860 2.612 -0.535 NBC L2R 32 L2R H1 H1 H 0 1 N N N 29.410 17.371 12.636 -2.635 -1.161 -0.741 H1 L2R 33 L2R H2 H2 H 0 1 N N N 31.550 18.227 13.565 -3.800 -3.272 -1.229 H2 L2R 34 L2R H3 H3 H 0 1 N N N 33.522 18.488 12.085 -6.195 -3.506 -0.719 H3 L2R 35 L2R H4 H4 H 0 1 N N N 33.358 17.956 9.661 -7.438 -1.634 0.281 H4 L2R 36 L2R H5 H5 H 0 1 N N N 31.212 17.108 8.744 -6.291 0.485 0.776 H5 L2R 37 L2R H6 H6 H 0 1 N N N 26.389 15.008 10.230 -3.196 3.837 1.717 H6 L2R 38 L2R H7 H7 H 0 1 N N N 29.113 19.048 8.372 -2.384 0.092 -1.773 H7 L2R 39 L2R H8 H8 H 0 1 N N N 27.752 18.413 7.388 -1.270 1.474 -1.914 H8 L2R 40 L2R H9 H9 H 0 1 N N N 29.528 16.370 7.065 0.033 0.629 0.013 H9 L2R 41 L2R H10 H10 H 0 1 N N N 30.682 17.725 7.306 -1.087 -0.744 0.175 H10 L2R 42 L2R H11 H11 H 0 1 N N N 29.733 18.970 5.463 -0.480 -1.546 -2.064 H11 L2R 43 L2R H12 H12 H 0 1 N N N 28.348 17.834 5.330 0.568 -0.129 -2.314 H12 L2R 44 L2R H13 H13 H 0 1 N N N 31.204 16.845 5.090 0.936 -2.167 -0.074 H13 L2R 45 L2R H14 H14 H 0 1 N N N 29.863 13.842 4.280 1.833 -3.956 -3.147 H14 L2R 46 L2R H16 H16 H 0 1 N N N 28.697 17.020 2.621 3.728 -2.080 -0.131 H16 L2R 47 L2R H17 H17 H 0 1 N N N 29.979 17.203 1.376 4.129 -0.528 0.641 H17 L2R 48 L2R H18 H18 H 0 1 N N N 26.929 18.975 2.715 2.270 -3.801 1.271 H18 L2R 49 L2R H19 H19 H 0 1 N N N 26.776 21.310 1.665 1.468 -3.756 3.733 H19 L2R 50 L2R H20 H20 H 0 1 N N N 28.947 21.910 0.483 1.824 -1.452 4.784 H20 L2R 51 L2R H22 H22 H 0 1 N N N 32.628 17.857 3.671 3.618 -0.346 -1.955 H22 L2R 52 L2R H23 H23 H 0 1 N N N 32.112 18.230 1.992 2.077 0.527 -2.129 H23 L2R 53 L2R H24 H24 H 0 1 N N N 33.588 15.449 3.947 5.579 0.891 -0.670 H24 L2R 54 L2R H25 H25 H 0 1 N N N 33.348 13.238 2.655 5.765 3.295 0.275 H25 L2R 55 L2R H26 H26 H 0 1 N N N 31.737 13.500 0.686 3.491 4.465 0.289 H26 L2R 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L2R CAZ NAY DOUB Y N 1 L2R CAZ NBB SING Y N 2 L2R NAY CAX SING Y N 3 L2R CBE NBC DOUB Y N 4 L2R CBE NBF SING Y N 5 L2R NBC CAV SING Y N 6 L2R NBB CBA SING Y N 7 L2R CAX CBA DOUB Y N 8 L2R CAX CAW SING N N 9 L2R CAW N SING N N 10 L2R NBF CBD SING Y N 11 L2R CAV CAU SING N N 12 L2R CAV CBD DOUB Y N 13 L2R CAU N SING N N 14 L2R N CA SING N N 15 L2R O C DOUB N N 16 L2R C OXT SING N N 17 L2R C CA SING N N 18 L2R CA CB SING N N 19 L2R CB CAN SING N N 20 L2R CAN CAM SING N N 21 L2R SAL CAJ DOUB N N 22 L2R CAM NAK SING N N 23 L2R CAJ NAK SING N N 24 L2R CAJ NAI SING N N 25 L2R NAK CAG SING N N 26 L2R CAE CAD DOUB Y N 27 L2R CAE CAF SING Y N 28 L2R NAI NAH SING N N 29 L2R CAG CAF SING N N 30 L2R CAG NAH DOUB N N 31 L2R CAD CAC SING Y N 32 L2R CAF CAB DOUB Y N 33 L2R CAC CAA DOUB Y N 34 L2R CAB CAA SING Y N 35 L2R CAB H1 SING N N 36 L2R CAA H2 SING N N 37 L2R CAC H3 SING N N 38 L2R CAD H4 SING N N 39 L2R CAE H5 SING N N 40 L2R NAI H6 SING N N 41 L2R CAM H7 SING N N 42 L2R CAM H8 SING N N 43 L2R CAN H9 SING N N 44 L2R CAN H10 SING N N 45 L2R CB H11 SING N N 46 L2R CB H12 SING N N 47 L2R CA H13 SING N N 48 L2R OXT H14 SING N N 49 L2R CAW H16 SING N N 50 L2R CAW H17 SING N N 51 L2R CBA H18 SING N N 52 L2R NBB H19 SING N N 53 L2R CAZ H20 SING N N 54 L2R CAU H22 SING N N 55 L2R CAU H23 SING N N 56 L2R CBD H24 SING N N 57 L2R NBF H25 SING N N 58 L2R CBE H26 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L2R InChI InChI 1.06 "InChI=1S/C21H24N8O2S/c30-20(31)18(28(11-16-9-22-13-24-16)12-17-10-23-14-25-17)7-4-8-29-19(26-27-21(29)32)15-5-2-1-3-6-15/h1-3,5-6,9-10,13-14,18H,4,7-8,11-12H2,(H,22,24)(H,23,25)(H,27,32)(H,30,31)/t18-/m0/s1" L2R InChIKey InChI 1.06 YWCRDRKNQRFREX-SFHVURJKSA-N L2R SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3c[nH]cn3)Cc4c[nH]cn4" L2R SMILES CACTVS 3.385 "OC(=O)[CH](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3c[nH]cn3)Cc4c[nH]cn4" L2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCC[C@@H](C(=O)O)N(Cc3c[nH]cn3)Cc4c[nH]cn4" L2R SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCCC(C(=O)O)N(Cc3c[nH]cn3)Cc4c[nH]cn4" # _pdbx_chem_comp_identifier.comp_id L2R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L2R "Create component" 2022-06-14 PDBE L2R "Modify descriptor" 2022-08-22 RCSB L2R "Initial release" 2023-04-26 RCSB #