data_L34
#
_chem_comp.id L34
_chem_comp.name
;4-(7-AMINO-9-HYDROXY-1-OXO-3,3A,4,5-TETRAHYDRO-2,5,6,8,9B-PENTAAZA-CYCLOPENTA[A]NAPHTHALEN-2-YL)-PHENYLCARBONYL-GLUTAMI
C ACID
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H21 N7 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms LY345899
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-12-15
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 471.423
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L34
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DIB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L34 N2A N2A N 0 1 N N N 1.311 49.658 13.575 0.146 -1.459 9.081 N2A L34 1
L34 N1 N1 N 0 1 Y N N 0.129 50.607 15.330 -1.011 -0.268 7.441 N1 L34 2
L34 C2 C2 C 0 1 Y N N 1.278 50.375 14.708 0.073 -0.938 7.799 C2 L34 3
L34 N3 N3 N 0 1 Y N N 2.458 50.958 15.227 1.089 -1.133 6.971 N3 L34 4
L34 C4 C4 C 0 1 Y N N 2.374 51.796 16.310 1.058 -0.653 5.729 C4 L34 5
L34 O4A O4A O 0 1 N N N 3.535 52.296 16.880 2.098 -0.855 4.881 O4A L34 6
L34 C4A C4A C 0 1 Y N N 1.160 52.057 16.908 -0.058 0.056 5.322 C4A L34 7
L34 N5 N5 N 0 1 N N N 1.030 53.187 17.844 -0.193 0.597 4.033 N5 L34 8
L34 C6 C6 C 0 1 N N R -0.258 53.376 18.595 -1.180 1.669 3.754 C6 L34 9
L34 C7 C7 C 0 1 N N N -1.385 52.906 17.659 -2.489 1.244 4.429 C7 L34 10
L34 N8 N8 N 0 1 N N N -1.125 51.755 16.980 -2.212 0.991 5.852 N8 L34 11
L34 C8A C8A C 0 1 Y N N 0.079 51.465 16.430 -1.113 0.248 6.221 C8A L34 12
L34 CX CX C 0 1 N N N 1.687 54.342 17.871 0.418 0.275 2.896 CX L34 13
L34 OX OX O 0 1 N N N 2.573 54.627 17.095 1.433 -0.392 2.850 OX L34 14
L34 C9 C9 C 0 1 N N N -0.300 54.925 18.767 -1.291 1.650 2.222 C9 L34 15
L34 N10 N10 N 0 1 N N N 1.125 55.234 18.691 -0.193 0.761 1.804 N10 L34 16
L34 C1B C1B C 0 1 Y N N 1.450 56.650 18.930 0.153 0.471 0.485 C1B L34 17
L34 C2B C2B C 0 1 Y N N 2.398 57.321 18.106 1.215 -0.388 0.220 C2B L34 18
L34 C3B C3B C 0 1 Y N N 2.853 58.592 18.455 1.560 -0.676 -1.080 C3B L34 19
L34 C4B C4B C 0 1 Y N N 2.339 59.217 19.587 0.843 -0.106 -2.135 C4B L34 20
L34 C5B C5B C 0 1 Y N N 1.406 58.562 20.378 -0.223 0.755 -1.865 C5B L34 21
L34 C6B C6B C 0 1 Y N N 0.944 57.300 20.040 -0.566 1.036 -0.562 C6B L34 22
L34 C7B C7B C 0 1 N N N 2.828 60.587 20.022 1.211 -0.413 -3.530 C7B L34 23
L34 O7B O7B O 0 1 N N N 3.715 61.170 19.392 2.139 -1.163 -3.764 O7B L34 24
L34 N N N 0 1 N N N 2.416 60.948 21.240 0.518 0.137 -4.547 N L34 25
L34 CA CA C 0 1 N N S 2.856 62.161 21.926 0.883 -0.167 -5.932 CA L34 26
L34 CB CB C 0 1 N N N 1.685 63.104 22.158 -0.363 -0.095 -6.816 CB L34 27
L34 CG CG C 0 1 N N N 0.908 63.488 20.939 -1.395 -1.112 -6.325 CG L34 28
L34 CD CD C 0 1 N N N -0.163 64.496 21.271 -2.623 -1.041 -7.196 CD L34 29
L34 OE1 OE1 O 0 1 N N N -1.294 64.082 21.601 -2.668 -0.257 -8.115 OE1 L34 30
L34 OE2 OE2 O 0 1 N N N 0.128 65.708 21.217 -3.667 -1.848 -6.951 OE2 L34 31
L34 C C C 0 1 N N N 3.426 61.837 23.298 1.900 0.834 -6.416 C L34 32
L34 O O O 0 1 N N N 3.006 60.825 23.898 2.717 0.513 -7.246 O L34 33
L34 OXT OXT O 0 1 N N N 4.214 62.662 23.796 1.898 2.083 -5.924 OXT L34 34
L34 HN21 1HN2 H 0 0 N N N 2.194 49.479 13.096 -0.586 -1.323 9.702 HN21 L34 35
L34 HN22 2HN2 H 0 0 N N N 0.668 50.086 12.908 0.931 -1.956 9.359 HN22 L34 36
L34 HO4 HO4 H 0 1 N N N 3.476 52.876 17.629 1.920 -1.681 4.413 HO4 L34 37
L34 H6 H6 H 0 1 N N N -0.352 52.830 19.562 -0.838 2.637 4.119 H6 L34 38
L34 H71 1H7 H 0 1 N N N -2.341 52.812 18.224 -3.227 2.041 4.334 H71 L34 39
L34 H72 2H7 H 0 1 N N N -1.659 53.719 16.947 -2.866 0.335 3.961 H72 L34 40
L34 HN8 HN8 H 0 1 N N N -1.821 51.677 16.239 -2.822 1.327 6.527 HN8 L34 41
L34 H91 1H9 H 0 1 N N N -0.953 55.474 18.049 -2.253 1.242 1.913 H91 L34 42
L34 H92 2H9 H 0 1 N N N -0.828 55.297 19.675 -1.149 2.651 1.816 H92 L34 43
L34 H2B H2B H 0 1 N N N 2.784 56.850 17.186 1.769 -0.828 1.036 H2B L34 44
L34 H3B H3B H 0 1 N N N 3.614 59.099 17.839 2.385 -1.343 -1.285 H3B L34 45
L34 H5B H5B H 0 1 N N N 1.025 59.052 21.289 -0.779 1.198 -2.678 H5B L34 46
L34 H6B H6B H 0 1 N N N 0.170 56.811 20.656 -1.390 1.702 -0.352 H6B L34 47
L34 HN HN H 0 1 N N N 1.756 60.288 21.652 -0.222 0.735 -4.361 HN L34 48
L34 HA HA H 0 1 N N N 3.629 62.631 21.275 1.308 -1.169 -5.984 HA L34 49
L34 HB1 1HB H 0 1 N N N 0.999 62.676 22.926 -0.787 0.907 -6.764 HB1 L34 50
L34 HB2 2HB H 0 1 N N N 2.034 64.019 22.690 -0.091 -0.321 -7.847 HB2 L34 51
L34 HG1 1HG H 0 1 N N N 1.576 63.853 20.124 -0.970 -2.114 -6.377 HG1 L34 52
L34 HG2 2HG H 0 1 N N N 0.484 62.594 20.424 -1.667 -0.885 -5.294 HG2 L34 53
L34 HE2 HE2 H 0 1 N N N -0.546 66.343 21.426 -4.455 -1.803 -7.509 HE2 L34 54
L34 HXT HXT H 0 1 N N N 4.570 62.459 24.653 2.551 2.726 -6.234 HXT L34 55
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L34 N2A C2 SING N N 1
L34 N2A HN21 SING N N 2
L34 N2A HN22 SING N N 3
L34 N1 C2 DOUB Y N 4
L34 N1 C8A SING Y N 5
L34 C2 N3 SING Y N 6
L34 N3 C4 DOUB Y N 7
L34 C4 O4A SING N N 8
L34 C4 C4A SING Y N 9
L34 O4A HO4 SING N N 10
L34 C4A N5 SING N N 11
L34 C4A C8A DOUB Y N 12
L34 N5 C6 SING N N 13
L34 N5 CX SING N N 14
L34 C6 C7 SING N N 15
L34 C6 C9 SING N N 16
L34 C6 H6 SING N N 17
L34 C7 N8 SING N N 18
L34 C7 H71 SING N N 19
L34 C7 H72 SING N N 20
L34 N8 C8A SING N N 21
L34 N8 HN8 SING N N 22
L34 CX OX DOUB N N 23
L34 CX N10 SING N N 24
L34 C9 N10 SING N N 25
L34 C9 H91 SING N N 26
L34 C9 H92 SING N N 27
L34 N10 C1B SING N N 28
L34 C1B C2B DOUB Y N 29
L34 C1B C6B SING Y N 30
L34 C2B C3B SING Y N 31
L34 C2B H2B SING N N 32
L34 C3B C4B DOUB Y N 33
L34 C3B H3B SING N N 34
L34 C4B C5B SING Y N 35
L34 C4B C7B SING N N 36
L34 C5B C6B DOUB Y N 37
L34 C5B H5B SING N N 38
L34 C6B H6B SING N N 39
L34 C7B O7B DOUB N N 40
L34 C7B N SING N N 41
L34 N CA SING N N 42
L34 N HN SING N N 43
L34 CA CB SING N N 44
L34 CA C SING N N 45
L34 CA HA SING N N 46
L34 CB CG SING N N 47
L34 CB HB1 SING N N 48
L34 CB HB2 SING N N 49
L34 CG CD SING N N 50
L34 CG HG1 SING N N 51
L34 CG HG2 SING N N 52
L34 CD OE1 DOUB N N 53
L34 CD OE2 SING N N 54
L34 OE2 HE2 SING N N 55
L34 C O DOUB N N 56
L34 C OXT SING N N 57
L34 OXT HXT SING N N 58
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L34 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)c4ccc(N3C(=O)N2c1c(nc(nc1O)N)NCC2C3)cc4)CCC(=O)O"
L34 SMILES_CANONICAL CACTVS 3.341 "Nc1nc(O)c2N3[C@H](CNc2n1)CN(C3=O)c4ccc(cc4)C(=O)N[C@@H](CCC(O)=O)C(O)=O"
L34 SMILES CACTVS 3.341 "Nc1nc(O)c2N3[CH](CNc2n1)CN(C3=O)c4ccc(cc4)C(=O)N[CH](CCC(O)=O)C(O)=O"
L34 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N2C[C@H]3CNc4c(c(nc(n4)N)O)N3C2=O"
L34 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)N2CC3CNc4c(c(nc(n4)N)O)N3C2=O"
L34 InChI InChI 1.03 "InChI=1S/C20H21N7O7/c21-19-24-15-14(17(31)25-19)27-11(7-22-15)8-26(20(27)34)10-3-1-9(2-4-10)16(30)23-12(18(32)33)5-6-13(28)29/h1-4,11-12H,5-8H2,(H,23,30)(H,28,29)(H,32,33)(H4,21,22,24,25,31)/t11-,12+/m1/s1"
L34 InChIKey InChI 1.03 JSNFRYBHBVDHSG-NEPJUHHUSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L34 "SYSTEMATIC NAME" ACDLabs 10.04 "N-({4-[(6aR)-3-amino-1-hydroxy-9-oxo-5,6,6a,7-tetrahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid"
L34 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[4-[(6aR)-3-amino-1-hydroxy-9-oxo-5,6,6a,7-tetrahydroimidazo[3,4-f]pteridin-8-yl]phenyl]carbonylamino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L34 "Create component" 1999-12-15 EBI
L34 "Modify descriptor" 2011-06-04 RCSB
L34 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id L34
_pdbx_chem_comp_synonyms.name LY345899
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##