data_L3F # _chem_comp.id L3F _chem_comp.name "(phenylmethyl) N-[(2S)-3-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H28 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "benzyl N-[(2S)-1-[[(2S)-1-hydroxy-3-phenylpropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]carbamate; calpain inhibitor III" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-14 _chem_comp.pdbx_modified_date 2023-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L3F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A4X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L3F N1 N1 N 0 1 N N N 17.170 -24.605 -0.096 0.974 0.589 -0.028 N1 L3F 1 L3F C4 C1 C 0 1 N N N 16.000 -22.511 -0.549 -1.408 0.724 -0.473 C4 L3F 2 L3F C5 C2 C 0 1 N N S 14.422 -20.623 -0.734 -3.740 0.836 -1.170 C5 L3F 3 L3F C6 C3 C 0 1 N N N 13.151 -20.658 0.124 -5.065 0.363 -0.567 C6 L3F 4 L3F C7 C4 C 0 1 Y N N 12.808 -22.037 0.630 -4.933 -1.072 -0.128 C7 L3F 5 L3F C8 C5 C 0 1 Y N N 13.252 -22.464 1.875 -4.511 -1.366 1.155 C8 L3F 6 L3F C10 C6 C 0 1 Y N N 12.236 -24.609 1.543 -4.691 -3.706 0.679 C10 L3F 7 L3F C13 C7 C 0 1 N N N 14.862 -19.197 -1.020 -3.910 2.250 -1.729 C13 L3F 8 L3F C15 C8 C 0 1 N N N 16.793 -27.964 0.460 4.271 -0.618 0.923 C15 L3F 9 L3F C17 C9 C 0 1 Y N N 16.344 -28.868 -1.855 6.423 0.382 0.126 C17 L3F 10 L3F C20 C10 C 0 1 Y N N 13.707 -28.062 -1.745 6.997 -1.873 -1.367 C20 L3F 11 L3F C21 C11 C 0 1 Y N N 14.549 -27.833 -0.668 5.835 -1.816 -0.621 C21 L3F 12 L3F N N2 N 0 1 N N N 15.493 -21.367 -0.073 -2.707 0.842 -0.132 N L3F 13 L3F C C12 C 0 1 N N N 18.995 -22.437 -0.984 0.674 2.056 2.451 C L3F 14 L3F O O1 O 0 1 N N N 15.705 -22.971 -1.649 -1.095 0.612 -1.640 O L3F 15 L3F C1 C13 C 0 1 N N N 18.350 -22.488 0.387 -0.405 2.050 1.367 C1 L3F 16 L3F C11 C14 C 0 1 Y N N 11.786 -24.196 0.308 -5.118 -3.412 -0.602 C11 L3F 17 L3F C12 C15 C 0 1 Y N N 12.068 -22.918 -0.147 -5.239 -2.095 -1.006 C12 L3F 18 L3F C14 C16 C 0 1 N N N 17.046 -25.637 0.755 2.001 0.074 0.677 C14 L3F 19 L3F C16 C17 C 0 1 Y N N 15.879 -28.233 -0.709 5.545 -0.686 0.120 C16 L3F 20 L3F C18 C18 C 0 1 Y N N 15.499 -29.095 -2.930 7.589 0.322 -0.615 C18 L3F 21 L3F C19 C19 C 0 1 Y N N 14.181 -28.692 -2.875 7.876 -0.806 -1.361 C19 L3F 22 L3F C2 C20 C 0 1 N N N 19.295 -23.112 1.394 -0.168 3.215 0.404 C2 L3F 23 L3F C3 C21 C 0 1 N N S 17.004 -23.233 0.349 -0.345 0.730 0.595 C3 L3F 24 L3F C9 C22 C 0 1 Y N N 12.967 -23.742 2.327 -4.390 -2.683 1.559 C9 L3F 25 L3F O1 O2 O 0 1 N N N 13.868 -18.476 -1.739 -4.409 3.111 -0.703 O1 L3F 26 L3F O2 O3 O 0 1 N N N 16.556 -25.572 1.862 1.833 -0.273 1.829 O2 L3F 27 L3F O3 O4 O 0 1 N N N 17.549 -26.763 0.201 3.212 -0.056 0.105 O3 L3F 28 L3F H20 H1 H 0 1 N N N 17.381 -24.786 -1.057 1.109 0.869 -0.947 H20 L3F 29 L3F H1 H2 H 0 1 N N N 14.194 -21.108 -1.694 -3.445 0.161 -1.973 H1 L3F 30 L3F H11 H3 H 0 1 N N N 13.296 -19.995 0.990 -5.316 0.985 0.292 H11 L3F 31 L3F H10 H4 H 0 1 N N N 12.310 -20.290 -0.483 -5.853 0.442 -1.316 H10 L3F 32 L3F H12 H5 H 0 1 N N N 13.825 -21.793 2.497 -4.275 -0.567 1.843 H12 L3F 33 L3F H14 H6 H 0 1 N N N 12.017 -25.606 1.895 -4.596 -4.734 0.994 H14 L3F 34 L3F H17 H7 H 0 1 N N N 15.786 -19.221 -1.616 -2.946 2.621 -2.077 H17 L3F 35 L3F H18 H8 H 0 1 N Y N 15.054 -18.685 -0.066 -4.614 2.229 -2.561 H18 L3F 36 L3F H21 H9 H 0 1 N N N 16.194 -27.833 1.373 3.990 -1.621 1.243 H21 L3F 37 L3F H22 H10 H 0 1 N N N 17.482 -28.812 0.592 4.427 0.013 1.799 H22 L3F 38 L3F H23 H11 H 0 1 N N N 17.374 -29.188 -1.908 6.196 1.265 0.705 H23 L3F 39 L3F H26 H12 H 0 1 N N N 12.676 -27.745 -1.698 7.224 -2.756 -1.946 H26 L3F 40 L3F H27 H13 H 0 1 N N N 14.167 -27.338 0.213 5.153 -2.653 -0.618 H27 L3F 41 L3F H9 H14 H 0 1 N N N 15.867 -21.002 0.780 -2.957 0.931 0.801 H9 L3F 42 L3F H3 H15 H 0 1 N N N 19.952 -21.899 -0.920 0.631 2.996 3.001 H3 L3F 43 L3F H2 H16 H 0 1 N N N 19.174 -23.461 -1.343 0.506 1.226 3.137 H2 L3F 44 L3F H4 H17 H 0 1 N N N 18.327 -21.914 -1.684 1.655 1.951 1.988 H4 L3F 45 L3F H5 H18 H 0 1 N N N 18.150 -21.454 0.706 -1.386 2.155 1.830 H5 L3F 46 L3F H15 H19 H 0 1 N N N 11.211 -24.871 -0.308 -5.353 -4.211 -1.289 H15 L3F 47 L3F H16 H20 H 0 1 N N N 11.709 -22.604 -1.116 -5.574 -1.866 -2.007 H16 L3F 48 L3F H24 H21 H 0 1 N N N 15.874 -29.589 -3.814 8.275 1.155 -0.611 H24 L3F 49 L3F H25 H22 H 0 1 N N N 13.524 -28.869 -3.713 8.787 -0.853 -1.940 H25 L3F 50 L3F H6 H23 H 0 1 N N N 18.812 -23.141 2.382 0.813 3.110 -0.059 H6 L3F 51 L3F H8 H24 H 0 1 N N N 19.544 -24.136 1.077 -0.938 3.210 -0.368 H8 L3F 52 L3F H7 H25 H 0 1 N N N 20.215 -22.512 1.454 -0.212 4.155 0.954 H7 L3F 53 L3F H H26 H 0 1 N N N 16.597 -23.239 1.371 -0.513 -0.100 1.281 H L3F 54 L3F H13 H27 H 0 1 N N N 13.319 -24.060 3.297 -4.059 -2.912 2.561 H13 L3F 55 L3F H19 H28 H 0 1 N N N 14.173 -17.591 -1.901 -4.542 4.025 -0.988 H19 L3F 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L3F C18 C19 DOUB Y N 1 L3F C18 C17 SING Y N 2 L3F C19 C20 SING Y N 3 L3F C17 C16 DOUB Y N 4 L3F C20 C21 DOUB Y N 5 L3F O1 C13 SING N N 6 L3F O C4 DOUB N N 7 L3F C13 C5 SING N N 8 L3F C C1 SING N N 9 L3F C5 N SING N N 10 L3F C5 C6 SING N N 11 L3F C16 C21 SING Y N 12 L3F C16 C15 SING N N 13 L3F C4 N SING N N 14 L3F C4 C3 SING N N 15 L3F C12 C11 DOUB Y N 16 L3F C12 C7 SING Y N 17 L3F N1 C3 SING N N 18 L3F N1 C14 SING N N 19 L3F C6 C7 SING N N 20 L3F O3 C15 SING N N 21 L3F O3 C14 SING N N 22 L3F C11 C10 SING Y N 23 L3F C3 C1 SING N N 24 L3F C1 C2 SING N N 25 L3F C7 C8 DOUB Y N 26 L3F C14 O2 DOUB N N 27 L3F C10 C9 DOUB Y N 28 L3F C8 C9 SING Y N 29 L3F N1 H20 SING N N 30 L3F C5 H1 SING N N 31 L3F C6 H11 SING N N 32 L3F C6 H10 SING N N 33 L3F C8 H12 SING N N 34 L3F C10 H14 SING N N 35 L3F C13 H17 SING N N 36 L3F C13 H18 SING N N 37 L3F C15 H21 SING N N 38 L3F C15 H22 SING N N 39 L3F C17 H23 SING N N 40 L3F C20 H26 SING N N 41 L3F C21 H27 SING N N 42 L3F N H9 SING N N 43 L3F C H3 SING N N 44 L3F C H2 SING N N 45 L3F C H4 SING N N 46 L3F C1 H5 SING N N 47 L3F C11 H15 SING N N 48 L3F C12 H16 SING N N 49 L3F C18 H24 SING N N 50 L3F C19 H25 SING N N 51 L3F C2 H6 SING N N 52 L3F C2 H8 SING N N 53 L3F C2 H7 SING N N 54 L3F C3 H SING N N 55 L3F C9 H13 SING N N 56 L3F O1 H19 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L3F InChI InChI 1.06 "InChI=1S/C22H28N2O4/c1-16(2)20(24-22(27)28-15-18-11-7-4-8-12-18)21(26)23-19(14-25)13-17-9-5-3-6-10-17/h3-12,16,19-20,25H,13-15H2,1-2H3,(H,23,26)(H,24,27)/t19-,20-/m0/s1" L3F InChIKey InChI 1.06 VLFHBNSJHLMKMM-PMACEKPBSA-N L3F SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)Cc2ccccc2" L3F SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CO)Cc2ccccc2" L3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](Cc1ccccc1)CO)NC(=O)OCc2ccccc2" L3F SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(Cc1ccccc1)CO)NC(=O)OCc2ccccc2" # _pdbx_chem_comp_identifier.comp_id L3F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 L3F "benzyl N-[(2S)-1-[[(2S)-1-hydroxy-3-phenylpropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]carbamate" AUTHOR ? 2 L3F "calpain inhibitor III" AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L3F "Create component" 2022-06-14 PDBE L3F "Modify leaving atom flag" 2022-06-14 PDBE L3F "Modify descriptor" 2022-08-22 RCSB L3F "Initial release" 2023-07-05 RCSB #