data_L3O # _chem_comp.id L3O _chem_comp.name "(2S,3S)-3-amino-2-hydroxy-5-methylhexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H15 N O3" _chem_comp.mon_nstd_parent_comp_id LEU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.199 _chem_comp.one_letter_code L _chem_comp.three_letter_code L3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WHB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L3O CZ CZ C 0 1 N N S Y N N 7.034 77.022 21.492 -1.098 -0.465 0.594 CZ L3O 1 L3O OZ OZ O 0 1 N N N N N N 6.687 75.642 21.467 -1.012 -1.877 0.390 OZ L3O 2 L3O CA CA C 0 1 N N S Y N N 8.496 77.193 21.961 0.113 0.217 -0.045 CA L3O 3 L3O CB CB C 0 1 N N N N N N 9.497 76.766 20.868 1.395 -0.314 0.598 CB L3O 4 L3O CG CG C 0 1 N N N N N N 10.909 77.284 21.124 2.609 0.310 -0.094 CG L3O 5 L3O CD1 CD1 C 0 1 N N N N N N 10.936 78.794 21.225 3.885 -0.106 0.642 CD1 L3O 6 L3O CD2 CD2 C 0 1 N N N N N N 11.837 76.862 20.001 2.675 -0.176 -1.543 CD2 L3O 7 L3O N N N 0 1 N N N Y Y N 8.806 76.468 23.210 0.024 1.668 0.164 N L3O 8 L3O C C C 0 1 N N N Y N Y 6.910 77.600 20.069 -2.362 0.058 -0.040 C L3O 9 L3O O O O 0 1 N N N Y N Y 7.209 78.786 19.894 -3.065 -0.683 -0.685 O L3O 10 L3O OXT OXT O 0 1 N Y N Y N Y 6.588 76.793 19.049 -2.705 1.346 0.112 OXT L3O 11 L3O HZ HZ H 0 1 N N N Y N N 6.359 77.547 22.184 -1.113 -0.253 1.663 HZ L3O 12 L3O HOZ HA H 0 1 N N N N N N 6.610 75.351 20.566 -0.994 -2.140 -0.541 HA L3O 13 L3O HA HB H 0 1 N N N Y N N 8.603 78.269 22.165 0.128 0.005 -1.114 HB L3O 14 L3O HB1C HB1C H 0 0 N N N N N N 9.531 75.667 20.839 1.406 -0.052 1.656 HB1C L3O 15 L3O HB2C HB2C H 0 0 N N N N N N 9.153 77.195 19.915 1.434 -1.398 0.492 HB2C L3O 16 L3O H HN1 H 0 1 N N N Y Y N 8.876 75.489 23.019 0.107 1.898 1.144 HN1 L3O 17 L3O H2 HN2 H 0 1 N Y N Y Y N 9.674 76.798 23.580 0.720 2.156 -0.381 HN2 L3O 18 L3O HG HG H 0 1 N N N N N N 11.245 76.853 22.079 2.519 1.396 -0.078 HG L3O 19 L3O HD11 HD11 H 0 0 N N N N N N 10.943 79.091 22.284 4.754 0.266 0.100 HD11 L3O 20 L3O HD12 HD12 H 0 0 N N N N N N 11.841 79.178 20.731 3.877 0.313 1.648 HD12 L3O 21 L3O HD13 HD13 H 0 0 N N N N N N 10.044 79.210 20.733 3.932 -1.194 0.701 HD13 L3O 22 L3O HD21 HD21 H 0 0 N N N N N N 11.262 76.760 19.069 1.766 0.120 -2.067 HD21 L3O 23 L3O HD22 HD22 H 0 0 N N N N N N 12.620 77.623 19.867 3.540 0.268 -2.036 HD22 L3O 24 L3O HD23 HD23 H 0 0 N N N N N N 12.302 75.897 20.253 2.766 -1.262 -1.559 HD23 L3O 25 L3O HXT HXT H 0 1 N Y N Y N Y 6.633 77.279 18.234 -3.524 1.636 -0.313 HXT L3O 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L3O CZ OZ SING N N 1 L3O CZ CA SING N N 2 L3O CZ C SING N N 3 L3O CA CB SING N N 4 L3O CA N SING N N 5 L3O CB CG SING N N 6 L3O CG CD1 SING N N 7 L3O CG CD2 SING N N 8 L3O C O DOUB N N 9 L3O C OXT SING N N 10 L3O CZ HZ SING N N 11 L3O OZ HOZ SING N N 12 L3O CA HA SING N N 13 L3O CB HB1C SING N N 14 L3O CB HB2C SING N N 15 L3O N H SING N N 16 L3O N H2 SING N N 17 L3O CG HG SING N N 18 L3O CD1 HD11 SING N N 19 L3O CD1 HD12 SING N N 20 L3O CD1 HD13 SING N N 21 L3O CD2 HD21 SING N N 22 L3O CD2 HD22 SING N N 23 L3O CD2 HD23 SING N N 24 L3O OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L3O SMILES ACDLabs 10.04 "O=C(O)C(O)C(N)CC(C)C" L3O SMILES_CANONICAL CACTVS 3.352 "CC(C)C[C@H](N)[C@H](O)C(O)=O" L3O SMILES CACTVS 3.352 "CC(C)C[CH](N)[CH](O)C(O)=O" L3O SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(C)C[C@@H]([C@@H](C(=O)O)O)N" L3O SMILES "OpenEye OEToolkits" 1.6.1 "CC(C)CC(C(C(=O)O)O)N" L3O InChI InChI 1.03 "InChI=1S/C7H15NO3/c1-4(2)3-5(8)6(9)7(10)11/h4-6,9H,3,8H2,1-2H3,(H,10,11)/t5-,6-/m0/s1" L3O InChIKey InChI 1.03 GZLMFCWSEKVVGO-WDSKDSINSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L3O "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S)-3-amino-2-hydroxy-5-methylhexanoic acid" L3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3S)-3-amino-2-hydroxy-5-methyl-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L3O "Create component" 2009-05-03 EBI L3O "Modify descriptor" 2011-06-04 RCSB L3O "Modify one letter code" 2019-04-16 EBI L3O "Modify backbone" 2023-11-03 PDBE L3O "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 L3O LEU "Beta-amino acid" "Named protein modification" "Amino-acid backbone" "Any position" ? ? ? ? 2 L3O LEU Hydroxylation "Named protein modification" "Amino-acid backbone" "Any position" ? ? ? ? #