data_L3S # _chem_comp.id L3S _chem_comp.name 5-methyl-2-nitrophenol _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H7 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-02-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 153.135 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L3S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6NV4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L3S C02 C1 C 0 1 Y N N N N N 17.555 19.929 1.490 -0.104 -0.955 0.014 C02 L3S 1 L3S C03 C2 C 0 1 Y N N N N N 18.546 20.024 2.446 -1.490 -1.021 0.013 C03 L3S 2 L3S C04 C3 C 0 1 Y N N N N N 18.559 21.087 3.330 -2.236 0.141 0.001 C04 L3S 3 L3S C05 C4 C 0 1 N N N N N N 19.663 21.148 4.371 -3.741 0.070 0.001 C05 L3S 4 L3S C06 C5 C 0 1 Y N N N N N 17.590 22.072 3.270 -1.602 1.370 -0.009 C06 L3S 5 L3S C07 C6 C 0 1 Y N N N N N 16.602 21.986 2.310 -0.221 1.439 -0.009 C07 L3S 6 L3S C08 C7 C 0 1 Y N N N N N 16.587 20.921 1.424 0.529 0.279 0.003 C08 L3S 7 L3S N09 N1 N 1 1 N N N N N N 15.536 20.861 0.433 2.007 0.354 0.004 N09 L3S 8 L3S O01 O1 O 0 1 N N N N N N 17.550 18.843 0.601 0.632 -2.097 0.031 O01 L3S 9 L3S O10 O2 O 0 1 N N N N N N 14.895 22.052 0.069 2.563 1.438 -0.006 O10 L3S 10 L3S O11 O3 O -1 1 N N N N N N 15.227 19.833 -0.047 2.669 -0.669 0.015 O11 L3S 11 L3S H031 H1 H 0 0 N N N N N N 19.313 19.266 2.504 -1.985 -1.981 0.022 H031 L3S 12 L3S H052 H2 H 0 0 N N N N N N 20.521 21.704 3.964 -4.105 0.062 1.028 H052 L3S 13 L3S H051 H3 H 0 0 N N N N N N 19.290 21.658 5.272 -4.145 0.937 -0.522 H051 L3S 14 L3S H053 H4 H 0 0 N N N N N N 19.978 20.127 4.632 -4.061 -0.841 -0.505 H053 L3S 15 L3S H061 H5 H 0 0 N N N N N N 17.606 22.898 3.966 -2.187 2.278 -0.018 H061 L3S 16 L3S H071 H6 H 0 0 N N N N N N 15.840 22.749 2.249 0.271 2.400 -0.018 H071 L3S 17 L3S H011 H7 H 0 0 N N N N N N 16.743 18.848 0.099 0.846 -2.441 -0.847 H011 L3S 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L3S O11 N09 SING N N 1 L3S O10 N09 DOUB N N 2 L3S N09 C08 SING N N 3 L3S O01 C02 SING N N 4 L3S C08 C02 DOUB Y N 5 L3S C08 C07 SING Y N 6 L3S C02 C03 SING Y N 7 L3S C07 C06 DOUB Y N 8 L3S C03 C04 DOUB Y N 9 L3S C06 C04 SING Y N 10 L3S C04 C05 SING N N 11 L3S C03 H031 SING N N 12 L3S C05 H052 SING N N 13 L3S C05 H051 SING N N 14 L3S C05 H053 SING N N 15 L3S C06 H061 SING N N 16 L3S C07 H071 SING N N 17 L3S O01 H011 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L3S SMILES ACDLabs 12.01 "c1(cc(C)ccc1[N+](=O)[O-])O" L3S InChI InChI 1.03 "InChI=1S/C7H7NO3/c1-5-2-3-6(8(10)11)7(9)4-5/h2-4,9H,1H3" L3S InChIKey InChI 1.03 NQXUSSVLFOBRSE-UHFFFAOYSA-N L3S SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(c(O)c1)[N+]([O-])=O" L3S SMILES CACTVS 3.385 "Cc1ccc(c(O)c1)[N+]([O-])=O" L3S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)O)[N+](=O)[O-]" L3S SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)O)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L3S "SYSTEMATIC NAME" ACDLabs 12.01 5-methyl-2-nitrophenol L3S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 5-methyl-2-nitro-phenol # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L3S "Create component" 2019-02-06 RCSB L3S "Initial release" 2020-09-23 RCSB L3S "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id L3S _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C05 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #