data_L3Y # _chem_comp.id L3Y _chem_comp.name "4-(methylsulfonyl)benzaldehyde" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H8 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-02-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 184.212 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L3Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6NV5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L3Y C01 C1 C 0 1 N N N N N N -14.677 -19.285 0.479 2.690 0.127 1.652 C01 L3Y 1 L3Y S02 S1 S 0 1 N N N N N N -15.876 -20.521 -0.059 2.199 0.072 -0.094 S02 L3Y 2 L3Y O03 O1 O 0 1 N N N N N N -15.210 -21.790 -0.260 2.624 -1.145 -0.693 O03 L3Y 3 L3Y C04 C2 C 0 1 Y N N N N N -16.974 -20.681 1.350 0.442 -0.055 -0.052 C04 L3Y 4 L3Y C05 C3 C 0 1 Y N N N N N -17.856 -19.640 1.557 -0.331 1.093 -0.050 C05 L3Y 5 L3Y C06 C4 C 0 1 Y N N N N N -18.682 -19.710 2.661 -1.707 1.002 -0.018 C06 L3Y 6 L3Y C07 C5 C 0 1 Y N N N N N -18.619 -20.796 3.516 -2.320 -0.254 0.012 C07 L3Y 7 L3Y C08 C6 C 0 1 N N N N N N -19.593 -20.864 4.664 -3.788 -0.360 0.045 C08 L3Y 8 L3Y C09 C7 C 0 1 Y N N N N N -17.732 -21.851 3.257 -1.532 -1.409 0.008 C09 L3Y 9 L3Y C10 C8 C 0 1 Y N N N N N -16.891 -21.783 2.153 -0.158 -1.302 -0.029 C10 L3Y 10 L3Y O11 O2 O 0 1 N N N N N N -16.506 -19.797 -1.203 2.446 1.323 -0.720 O11 L3Y 11 L3Y H1 H1 H 0 1 N N N N N N -14.112 -19.672 1.340 2.359 -0.784 2.151 H1 L3Y 12 L3Y H2 H2 H 0 1 N N N N N N -13.983 -19.064 -0.345 3.774 0.206 1.722 H2 L3Y 13 L3Y H3 H3 H 0 1 N N N N N N -15.205 -18.365 0.770 2.230 0.991 2.131 H3 L3Y 14 L3Y H4 H4 H 0 1 N N N N N N -17.899 -18.800 0.879 0.144 2.063 -0.073 H4 L3Y 15 L3Y H5 H5 H 0 1 N N N N N N -19.382 -18.912 2.859 -2.308 1.899 -0.015 H5 L3Y 16 L3Y H6 H6 H 0 1 N N N N N N -20.440 -20.194 4.661 -4.259 -1.331 0.068 H6 L3Y 17 L3Y H9 H9 H 0 1 N N N N N N -17.703 -22.710 3.911 -1.999 -2.383 0.031 H9 L3Y 18 L3Y H10 H10 H 0 1 N N N N N N -16.193 -22.578 1.936 0.452 -2.193 -0.036 H10 L3Y 19 L3Y O1 O3 O 0 1 N Y N N N N -19.463 -21.683 5.647 -4.468 0.644 0.048 O1 L3Y 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L3Y O11 S02 DOUB N N 1 L3Y O03 S02 DOUB N N 2 L3Y S02 C01 SING N N 3 L3Y S02 C04 SING N N 4 L3Y C04 C05 DOUB Y N 5 L3Y C04 C10 SING Y N 6 L3Y C05 C06 SING Y N 7 L3Y C10 C09 DOUB Y N 8 L3Y C06 C07 DOUB Y N 9 L3Y C09 C07 SING Y N 10 L3Y C07 C08 SING N N 11 L3Y C01 H1 SING N N 12 L3Y C01 H2 SING N N 13 L3Y C01 H3 SING N N 14 L3Y C05 H4 SING N N 15 L3Y C06 H5 SING N N 16 L3Y C08 H6 SING N N 17 L3Y C09 H9 SING N N 18 L3Y C10 H10 SING N N 19 L3Y C08 O1 DOUB N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L3Y SMILES ACDLabs 12.01 "CS(c1ccc(C=O)cc1)(=O)=O" L3Y InChI InChI 1.03 "InChI=1S/C8H8O3S/c1-12(10,11)8-4-2-7(6-9)3-5-8/h2-6H,1H3" L3Y InChIKey InChI 1.03 PSVPUHBSBYJSMQ-UHFFFAOYSA-N L3Y SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)c1ccc(C=O)cc1" L3Y SMILES CACTVS 3.385 "C[S](=O)(=O)c1ccc(C=O)cc1" L3Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1ccc(cc1)C=O" L3Y SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1ccc(cc1)C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L3Y "SYSTEMATIC NAME" ACDLabs 12.01 "4-(methylsulfonyl)benzaldehyde" L3Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-methylsulfonylbenzaldehyde # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L3Y "Create component" 2019-02-06 RCSB L3Y "Other modification" 2019-02-06 EBI L3Y "Initial release" 2020-09-23 RCSB L3Y "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id L3Y _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C08 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #