data_L4D # _chem_comp.id L4D _chem_comp.name "{(S)-N-(2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H21 Fe N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "{N,N'-Bis(2-pyridylmethyl)-N-carboxymethyl-N'-methyl}iron(2+)" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2012-12-13 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 369.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L4D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4I9D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L4D FE FE FE 2 0 N N N -35.879 21.438 -20.857 -35.879 21.438 -20.857 FE L4D 1 L4D CAK CAK C 0 1 Y N N -32.211 19.447 -20.879 -32.211 19.447 -20.879 CAK L4D 2 L4D CAG CAG C 0 1 Y N N -32.204 18.638 -19.751 -32.204 18.638 -19.751 CAG L4D 3 L4D CAE CAE C 0 1 Y N N -33.330 18.561 -18.906 -33.330 18.561 -18.906 CAE L4D 4 L4D CAI CAI C 0 1 Y N N -34.456 19.353 -19.208 -34.456 19.353 -19.208 CAI L4D 5 L4D NAS NAS N 0 1 Y N N -34.422 20.105 -20.290 -34.422 20.105 -20.290 NAS L4D 6 L4D CAW CAW C 0 1 Y N N -33.361 20.227 -21.116 -33.361 20.227 -21.116 CAW L4D 7 L4D CAQ CAQ C 0 1 N N N -33.488 21.116 -22.344 -33.488 21.116 -22.344 CAQ L4D 8 L4D N N N 0 1 N N N -34.943 21.221 -22.735 -34.943 21.221 -22.735 N L4D 9 L4D CA CA C 0 1 N N N -35.464 19.980 -23.425 -35.464 19.980 -23.425 CA L4D 10 L4D C C C 0 1 N N N -36.870 19.532 -22.844 -36.870 19.532 -22.844 C L4D 11 L4D OAE OAE O 0 1 N N N -37.238 19.953 -21.707 -37.238 19.953 -21.707 OAE L4D 12 L4D O O O 0 1 N N N -37.572 18.847 -23.587 -37.572 18.847 -23.587 O L4D 13 L4D CAM CAM C 0 1 N N N -35.082 22.386 -23.638 -35.082 22.386 -23.638 CAM L4D 14 L4D CAN CAN C 0 1 N N N -36.384 23.198 -23.449 -36.384 23.198 -23.449 CAN L4D 15 L4D NAZ NAZ N 0 1 N N N -36.811 23.317 -22.031 -36.811 23.317 -22.031 NAZ L4D 16 L4D CAP CAP C 0 1 N N N -38.211 22.986 -21.822 -38.211 22.986 -21.822 CAP L4D 17 L4D CAR CAR C 0 1 N N N -36.543 24.609 -21.409 -36.543 24.609 -21.409 CAR L4D 18 L4D CAX CAX C 0 1 Y N N -35.339 24.479 -20.433 -35.339 24.479 -20.433 CAX L4D 19 L4D CAL CAL C 0 1 Y N N -34.760 25.626 -19.884 -34.760 25.626 -19.884 CAL L4D 20 L4D CAH CAH C 0 1 Y N N -33.696 25.540 -18.990 -33.696 25.540 -18.990 CAH L4D 21 L4D CAF CAF C 0 1 Y N N -33.218 24.269 -18.682 -33.218 24.269 -18.682 CAF L4D 22 L4D CAJ CAJ C 0 1 Y N N -33.805 23.150 -19.270 -33.805 23.150 -19.270 CAJ L4D 23 L4D NAT NAT N 0 1 Y N N -34.837 23.275 -20.118 -34.837 23.275 -20.118 NAT L4D 24 L4D H1 H1 H 0 1 N N N -31.366 19.478 -21.551 -31.366 19.478 -21.551 H1 L4D 25 L4D H2 H2 H 0 1 N N N -31.323 18.059 -19.517 -31.323 18.059 -19.517 H2 L4D 26 L4D H3 H3 H 0 1 N N N -33.330 17.909 -18.045 -33.330 17.909 -18.045 H3 L4D 27 L4D H4 H4 H 0 1 N N N -35.326 19.344 -18.568 -35.326 19.344 -18.568 H4 L4D 28 L4D H5 H5 H 0 1 N N N -32.915 20.679 -23.175 -32.915 20.679 -23.175 H5 L4D 29 L4D H6 H6 H 0 1 N N N -33.096 22.118 -22.115 -33.096 22.118 -22.115 H6 L4D 30 L4D H7 H7 H 0 1 N N N -34.742 19.163 -23.281 -34.742 19.163 -23.281 H7 L4D 31 L4D H8 H8 H 0 1 N N N -35.572 20.189 -24.500 -35.572 20.189 -24.500 H8 L4D 32 L4D H9 H9 H 0 1 N N N -35.053 22.021 -24.675 -35.053 22.021 -24.675 H9 L4D 33 L4D H10 H10 H 0 1 N N N -34.230 23.059 -23.463 -34.230 23.059 -23.463 H10 L4D 34 L4D H11 H11 H 0 1 N N N -36.224 24.210 -23.850 -36.224 24.210 -23.850 H11 L4D 35 L4D H12 H12 H 0 1 N N N -37.188 22.703 -24.014 -37.188 22.703 -24.014 H12 L4D 36 L4D H13 H13 H 0 1 N N N -38.459 23.095 -20.756 -38.459 23.095 -20.756 H13 L4D 37 L4D H14 H14 H 0 1 N N N -38.841 23.665 -22.416 -38.841 23.665 -22.416 H14 L4D 38 L4D H15 H15 H 0 1 N N N -38.393 21.948 -22.137 -38.393 21.948 -22.137 H15 L4D 39 L4D H16 H16 H 0 1 N N N -36.304 25.348 -22.188 -36.304 25.348 -22.188 H16 L4D 40 L4D H17 H17 H 0 1 N N N -37.432 24.938 -20.851 -37.432 24.938 -20.851 H17 L4D 41 L4D H18 H18 H 0 1 N N N -35.145 26.597 -20.158 -35.145 26.597 -20.158 H18 L4D 42 L4D H19 H19 H 0 1 N N N -33.258 26.425 -18.552 -33.258 26.425 -18.552 H19 L4D 43 L4D H20 H20 H 0 1 N N N -32.396 24.151 -17.991 -32.396 24.151 -17.991 H20 L4D 44 L4D H21 H21 H 0 1 N N N -33.423 22.167 -19.039 -33.423 22.167 -19.039 H21 L4D 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L4D CAM CAN SING N N 1 L4D CAM N SING N N 2 L4D O C DOUB N N 3 L4D CAN NAZ SING N N 4 L4D CA C SING N N 5 L4D CA N SING N N 6 L4D C OAE SING N N 7 L4D N CAQ SING N N 8 L4D N FE SING N N 9 L4D CAQ CAW SING N N 10 L4D NAZ CAP SING N N 11 L4D NAZ CAR SING N N 12 L4D NAZ FE SING N N 13 L4D OAE FE SING N N 14 L4D CAR CAX SING N N 15 L4D CAW CAK DOUB Y N 16 L4D CAW NAS SING Y N 17 L4D CAK CAG SING Y N 18 L4D FE NAS SING N N 19 L4D FE NAT SING N N 20 L4D CAX NAT DOUB Y N 21 L4D CAX CAL SING Y N 22 L4D NAS CAI DOUB Y N 23 L4D NAT CAJ SING Y N 24 L4D CAL CAH DOUB Y N 25 L4D CAG CAE DOUB Y N 26 L4D CAJ CAF DOUB Y N 27 L4D CAI CAE SING Y N 28 L4D CAH CAF SING Y N 29 L4D CAK H1 SING N N 30 L4D CAG H2 SING N N 31 L4D CAE H3 SING N N 32 L4D CAI H4 SING N N 33 L4D CAQ H5 SING N N 34 L4D CAQ H6 SING N N 35 L4D CA H7 SING N N 36 L4D CA H8 SING N N 37 L4D CAM H9 SING N N 38 L4D CAM H10 SING N N 39 L4D CAN H11 SING N N 40 L4D CAN H12 SING N N 41 L4D CAP H13 SING N N 42 L4D CAP H14 SING N N 43 L4D CAP H15 SING N N 44 L4D CAR H16 SING N N 45 L4D CAR H17 SING N N 46 L4D CAL H18 SING N N 47 L4D CAH H19 SING N N 48 L4D CAF H20 SING N N 49 L4D CAJ H21 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L4D SMILES ACDLabs 12.01 "O=C5O[Fe+2]346n1ccccc1CN6(CCN4(Cc2ccccn23)C)C5" L4D InChI InChI 1.03 "InChI=1S/C17H22N4O2.Fe/c1-20(12-15-6-2-4-8-18-15)10-11-21(14-17(22)23)13-16-7-3-5-9-19-16;/h2-9H,10-14H2,1H3,(H,22,23);/q;+3/p-1" L4D InChIKey InChI 1.03 KEGLXUIHTNIIAB-UHFFFAOYSA-M L4D SMILES_CANONICAL CACTVS 3.370 "CN12|[Fe++]|3|4(OC(=O)CN|3(CC1)Cc5ccccn|45)|n6ccccc6C2" L4D SMILES CACTVS 3.370 "CN12|[Fe++]|3|4(OC(=O)CN|3(CC1)Cc5ccccn|45)|n6ccccc6C2" L4D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[N]12CC[N]34[Fe+2]1([N]5=C(C2)C=CC=C5)([N]6=CC=CC=C6C3)OC(=O)C4" L4D SMILES "OpenEye OEToolkits" 1.7.6 "C[N]12CC[N]34[Fe+2]1([N]5=C(C2)C=CC=C5)([N]6=CC=CC=C6C3)OC(=O)C4" # _pdbx_chem_comp_identifier.comp_id L4D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "{(S)-N-(2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L4D "Create component" 2012-12-13 RCSB L4D "Modify synonyms" 2012-12-21 RCSB L4D "Initial release" 2013-04-17 RCSB L4D "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L4D _pdbx_chem_comp_synonyms.name "{N,N'-Bis(2-pyridylmethyl)-N-carboxymethyl-N'-methyl}iron(2+)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##