data_L4E # _chem_comp.id L4E _chem_comp.name "geranylgeranyl dihydroxybenzoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H38 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-19 _chem_comp.pdbx_modified_date 2020-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L4E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SBE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L4E C4 C1 C 0 1 N N N 12.591 -4.971 -17.081 9.510 -0.133 -0.170 C4 L4E 1 L4E C5 C2 C 0 1 N N N 12.890 -5.960 -18.041 9.974 -1.319 0.134 C5 L4E 2 L4E C6 C3 C 0 1 N N N 14.231 -6.401 -18.370 9.042 -2.503 0.183 C6 L4E 3 L4E C7 C4 C 0 1 N N N 11.764 -6.689 -18.678 11.439 -1.501 0.436 C7 L4E 4 L4E C8 C5 C 0 1 N N N 15.578 -6.430 -15.008 5.556 2.291 -0.670 C8 L4E 5 L4E C10 C6 C 0 1 N N N 13.435 -8.776 -15.324 3.730 0.857 0.930 C10 L4E 6 L4E C13 C7 C 0 1 N N N 15.758 -10.200 -13.549 0.709 -0.420 1.542 C13 L4E 7 L4E C15 C8 C 0 1 N N N 15.514 -8.147 -11.278 -0.246 -0.356 -1.110 C15 L4E 8 L4E C17 C9 C 0 1 N N N 15.926 -10.299 -10.118 -2.137 0.939 -2.058 C17 L4E 9 L4E C20 C10 C 0 1 N N N 15.274 -12.747 -10.181 -4.429 1.598 -1.536 C20 L4E 10 L4E C21 C11 C 0 1 Y N N 15.919 -13.378 -9.033 -5.235 0.845 -0.508 C21 L4E 11 L4E C22 C12 C 0 1 Y N N 16.167 -12.718 -7.827 -5.613 -0.458 -0.751 C22 L4E 12 L4E C24 C13 C 0 1 Y N N 17.281 -14.643 -6.883 -6.721 -0.532 1.398 C24 L4E 13 L4E C26 C14 C 0 1 Y N N 16.379 -14.691 -9.147 -5.589 1.464 0.683 C26 L4E 14 L4E C3 C15 C 0 1 N N N 13.550 -4.151 -16.348 8.028 0.072 -0.355 C3 L4E 15 L4E C2 C16 C 0 1 N N N 13.610 -4.746 -14.887 7.542 1.166 0.598 C2 L4E 16 L4E C1 C17 C 0 1 N N N 14.131 -6.178 -14.941 6.061 1.371 0.412 C1 L4E 17 L4E C9 C18 C 0 1 N N N 13.129 -7.292 -15.067 5.211 0.750 1.192 C9 L4E 18 L4E C11 C19 C 0 1 N N N 13.304 -9.650 -14.126 3.160 -0.535 0.650 C11 L4E 19 L4E C12 C20 C 0 1 N N N 14.494 -9.472 -13.248 1.680 -0.427 0.389 C12 L4E 20 L4E C14 C21 C 0 1 N N N 14.367 -8.471 -12.187 1.237 -0.341 -0.841 C14 L4E 21 L4E C16 C22 C 0 1 N N N 15.461 -8.880 -9.946 -0.654 0.954 -1.789 C16 L4E 22 L4E C18 C23 C 0 1 N N N 17.397 -10.516 -10.277 -2.668 0.293 -3.311 C18 L4E 23 L4E C19 C24 C 0 1 N N N 14.955 -11.302 -10.089 -2.963 1.489 -1.203 C19 L4E 24 L4E C23 C25 C 0 1 Y N N 16.844 -13.337 -6.732 -6.360 -1.157 0.201 C23 L4E 25 L4E C29 C26 C 0 1 N N N 17.046 -12.619 -5.515 -6.766 -2.551 -0.058 C29 L4E 26 L4E O31 O1 O 0 1 N N N 16.614 -11.421 -5.396 -6.452 -3.092 -1.099 O31 L4E 27 L4E O30 O2 O 0 1 N N N 17.720 -13.153 -4.568 -7.486 -3.224 0.861 O30 L4E 28 L4E C25 C27 C 0 1 Y N N 17.050 -15.331 -8.094 -6.334 0.772 1.637 C25 L4E 29 L4E O28 O3 O 0 1 N N N 17.499 -16.595 -8.211 -6.680 1.381 2.803 O28 L4E 30 L4E O27 O4 O 0 1 N N N 16.159 -15.337 -10.348 -5.209 2.746 0.919 O27 L4E 31 L4E H1 H1 H 0 1 N N N 11.546 -4.804 -16.867 10.189 0.700 -0.284 H1 L4E 32 L4E H2 H2 H 0 1 N N N 14.964 -5.780 -17.834 8.607 -2.663 -0.804 H2 L4E 33 L4E H3 H3 H 0 1 N N N 14.354 -7.453 -18.072 9.599 -3.391 0.482 H3 L4E 34 L4E H4 H4 H 0 1 N N N 14.393 -6.305 -19.454 8.248 -2.311 0.904 H4 L4E 35 L4E H5 H5 H 0 1 N N N 10.810 -6.255 -18.344 11.611 -1.361 1.503 H5 L4E 36 L4E H6 H6 H 0 1 N N N 11.843 -6.602 -19.772 11.748 -2.506 0.147 H6 L4E 37 L4E H7 H7 H 0 1 N N N 11.805 -7.750 -18.390 12.019 -0.767 -0.125 H7 L4E 38 L4E H8 H8 H 0 1 N N N 16.122 -5.481 -14.893 6.402 2.781 -1.153 H8 L4E 39 L4E H9 H9 H 0 1 N N N 15.868 -7.118 -14.200 5.001 1.713 -1.408 H9 L4E 40 L4E H10 H10 H 0 1 N N N 15.827 -6.880 -15.980 4.902 3.044 -0.231 H10 L4E 41 L4E H11 H11 H 0 1 N N N 12.740 -9.142 -16.094 3.237 1.283 1.804 H11 L4E 42 L4E H12 H12 H 0 1 N N N 14.467 -8.855 -15.695 3.560 1.500 0.067 H12 L4E 43 L4E H13 H13 H 0 1 N N N 16.518 -9.943 -12.796 1.262 -0.416 2.481 H13 L4E 44 L4E H14 H14 H 0 1 N N N 15.571 -11.284 -13.526 0.084 0.471 1.485 H14 L4E 45 L4E H15 H15 H 0 1 N N N 16.119 -9.911 -14.547 0.080 -1.309 1.493 H15 L4E 46 L4E H16 H16 H 0 1 N N N 16.450 -8.420 -11.788 -0.488 -1.194 -1.763 H16 L4E 47 L4E H17 H17 H 0 1 N N N 15.506 -7.065 -11.080 -0.785 -0.461 -0.169 H17 L4E 48 L4E H18 H18 H 0 1 N N N 14.329 -13.281 -10.360 -4.610 1.172 -2.523 H18 L4E 49 L4E H19 H19 H 0 1 N N N 15.940 -12.881 -11.046 -4.725 2.647 -1.533 H19 L4E 50 L4E H20 H20 H 0 1 N N N 15.833 -11.697 -7.718 -5.333 -0.938 -1.677 H20 L4E 51 L4E H21 H21 H 0 1 N N N 17.799 -15.135 -6.073 -7.299 -1.069 2.136 H21 L4E 52 L4E H22 H22 H 0 1 N N N 14.541 -4.206 -16.823 7.829 0.372 -1.384 H22 L4E 53 L4E H23 H23 H 0 1 N N N 13.214 -3.104 -16.320 7.503 -0.858 -0.139 H23 L4E 54 L4E H24 H24 H 0 1 N N N 14.284 -4.134 -14.269 7.741 0.867 1.627 H24 L4E 55 L4E H25 H25 H 0 1 N N N 12.602 -4.739 -14.447 8.067 2.096 0.382 H25 L4E 56 L4E H26 H26 H 0 1 N N N 12.088 -7.022 -14.967 5.571 0.161 2.023 H26 L4E 57 L4E H27 H27 H 0 1 N N N 12.395 -9.377 -13.571 3.653 -0.961 -0.223 H27 L4E 58 L4E H28 H28 H 0 1 N N N 13.237 -10.701 -14.444 3.331 -1.178 1.514 H28 L4E 59 L4E H29 H29 H 0 1 N N N 13.427 -7.955 -12.057 1.934 -0.259 -1.662 H29 L4E 60 L4E H30 H30 H 0 1 N N N 16.114 -8.368 -9.223 -0.412 1.792 -1.135 H30 L4E 61 L4E H31 H31 H 0 1 N N N 14.427 -8.879 -9.571 -0.115 1.059 -2.730 H31 L4E 62 L4E H32 H32 H 0 1 N N N 17.915 -9.546 -10.264 -2.795 1.050 -4.085 H32 L4E 63 L4E H33 H33 H 0 1 N N N 17.767 -11.140 -9.450 -1.965 -0.465 -3.655 H33 L4E 64 L4E H34 H34 H 0 1 N N N 17.592 -11.022 -11.234 -3.631 -0.174 -3.099 H34 L4E 65 L4E H35 H35 H 0 1 N N N 13.919 -11.011 -9.995 -2.594 1.863 -0.260 H35 L4E 66 L4E H36 H36 H 0 1 N N N 17.810 -12.533 -3.854 -7.729 -4.135 0.647 H36 L4E 67 L4E H37 H37 H 0 1 N N N 17.924 -16.857 -7.403 -7.527 1.847 2.767 H37 L4E 68 L4E H38 H38 H 0 1 N N N 16.514 -16.217 -10.304 -5.846 3.407 0.615 H38 L4E 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L4E C7 C5 SING N N 1 L4E C6 C5 SING N N 2 L4E C5 C4 DOUB N N 3 L4E C4 C3 SING N N 4 L4E C3 C2 SING N N 5 L4E C10 C9 SING N N 6 L4E C10 C11 SING N N 7 L4E C9 C1 DOUB N E 8 L4E C8 C1 SING N N 9 L4E C1 C2 SING N N 10 L4E C11 C12 SING N N 11 L4E C13 C12 SING N N 12 L4E C12 C14 DOUB N E 13 L4E C14 C15 SING N N 14 L4E C15 C16 SING N N 15 L4E O27 C26 SING N N 16 L4E C18 C17 SING N N 17 L4E C20 C19 SING N N 18 L4E C20 C21 SING N N 19 L4E C17 C19 DOUB N E 20 L4E C17 C16 SING N N 21 L4E C26 C21 DOUB Y N 22 L4E C26 C25 SING Y N 23 L4E C21 C22 SING Y N 24 L4E O28 C25 SING N N 25 L4E C25 C24 DOUB Y N 26 L4E C22 C23 DOUB Y N 27 L4E C24 C23 SING Y N 28 L4E C23 C29 SING N N 29 L4E C29 O31 DOUB N N 30 L4E C29 O30 SING N N 31 L4E C4 H1 SING N N 32 L4E C6 H2 SING N N 33 L4E C6 H3 SING N N 34 L4E C6 H4 SING N N 35 L4E C7 H5 SING N N 36 L4E C7 H6 SING N N 37 L4E C7 H7 SING N N 38 L4E C8 H8 SING N N 39 L4E C8 H9 SING N N 40 L4E C8 H10 SING N N 41 L4E C10 H11 SING N N 42 L4E C10 H12 SING N N 43 L4E C13 H13 SING N N 44 L4E C13 H14 SING N N 45 L4E C13 H15 SING N N 46 L4E C15 H16 SING N N 47 L4E C15 H17 SING N N 48 L4E C20 H18 SING N N 49 L4E C20 H19 SING N N 50 L4E C22 H20 SING N N 51 L4E C24 H21 SING N N 52 L4E C3 H22 SING N N 53 L4E C3 H23 SING N N 54 L4E C2 H24 SING N N 55 L4E C2 H25 SING N N 56 L4E C9 H26 SING N N 57 L4E C11 H27 SING N N 58 L4E C11 H28 SING N N 59 L4E C14 H29 SING N N 60 L4E C16 H30 SING N N 61 L4E C16 H31 SING N N 62 L4E C18 H32 SING N N 63 L4E C18 H33 SING N N 64 L4E C18 H34 SING N N 65 L4E C19 H35 SING N N 66 L4E O30 H36 SING N N 67 L4E O28 H37 SING N N 68 L4E O27 H38 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L4E InChI InChI 1.03 "InChI=1S/C27H38O4/c1-19(2)9-6-10-20(3)11-7-12-21(4)13-8-14-22(5)15-16-23-17-24(27(30)31)18-25(28)26(23)29/h9,11,13,15,17-18,28-29H,6-8,10,12,14,16H2,1-5H3,(H,30,31)/b20-11+,21-13+,22-15+" L4E InChIKey InChI 1.03 BSKXNBAQBKFMLO-FLPKSHQQSA-N L4E SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCCC(/C)=C/CCC(/C)=C/CC\C(C)=C\Cc1cc(cc(O)c1O)C(O)=O" L4E SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCc1cc(cc(O)c1O)C(O)=O" L4E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/CC/C(=C/CC/C(=C/Cc1cc(cc(c1O)O)C(=O)O)/C)/C)/C)C" L4E SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCCC(=CCCC(=CCc1cc(cc(c1O)O)C(=O)O)C)C)C)C" # _pdbx_chem_comp_identifier.comp_id L4E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3,4-bis(oxidanyl)-5-[(2~{E},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L4E "Create component" 2019-07-19 EBI L4E "Initial release" 2020-07-15 RCSB ##