data_L4F # _chem_comp.id L4F _chem_comp.name "2-[4-[[(2~{S})-1-oxidanylidene-3-phenyl-1-[[(3~{S})-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]amino]propan-2-yl]carbamoyl]piperazin-1-yl]ethyl 4-carbamimidamidobenzoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H49 N7 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-10 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 767.936 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L4F C10 C1 C 0 1 N N N N N N -0.196 4.420 17.261 -2.638 -1.037 -2.477 C10 L4F 1 L4F C15 C2 C 0 1 N N N N N N -4.555 1.524 15.584 2.894 -0.694 -0.098 C15 L4F 2 L4F C17 C3 C 0 1 N N S N N N -6.617 2.147 16.846 5.099 -1.093 0.860 C17 L4F 3 L4F C21 C4 C 0 1 Y N N N N N -9.487 5.683 16.300 7.450 3.663 1.314 C21 L4F 4 L4F C22 C5 C 0 1 Y N N N N N -8.819 6.272 17.358 7.460 4.132 2.614 C22 L4F 5 L4F C24 C6 C 0 1 Y N N N N N -8.919 8.383 16.229 6.841 6.309 1.832 C24 L4F 6 L4F C26 C7 C 0 1 Y N N N N N -9.867 6.433 15.205 7.141 4.518 0.272 C26 L4F 7 L4F C02 C8 C 0 1 N N N N N N 0.164 5.360 22.315 -7.368 -1.622 1.355 C02 L4F 8 L4F C04 C9 C 0 1 N N N N N N 1.322 3.683 21.061 -5.609 -3.117 0.744 C04 L4F 9 L4F C05 C10 C 0 1 N N N N N N 0.722 2.606 20.151 -4.716 -3.439 -0.456 C05 L4F 10 L4F C07 C11 C 0 1 N N N N N N 0.429 1.873 18.127 -2.771 -2.157 0.206 C07 L4F 11 L4F C08 C12 C 0 1 N N N N N N 0.333 2.262 16.652 -2.024 -0.842 -0.036 C08 L4F 12 L4F C09 C13 C 0 1 N N N N N N -0.033 4.085 18.741 -3.362 -2.345 -2.139 C09 L4F 13 L4F C12 C14 C 0 1 N N N N N N -1.931 3.148 15.847 -0.341 -0.521 -1.791 C12 L4F 14 L4F C14 C15 C 0 1 N N S N N N -3.537 1.832 14.480 2.005 -0.204 -1.211 C14 L4F 15 L4F C18 C16 C 0 1 N N N N N N -7.996 1.862 16.249 6.446 -0.371 0.791 C18 L4F 16 L4F C19 C17 C 0 1 N N N N N N -8.553 3.029 15.412 6.240 1.120 1.065 C19 L4F 17 L4F C23 C18 C 0 1 Y N N N N N -8.533 7.627 17.318 7.156 5.456 2.873 C23 L4F 18 L4F C25 C19 C 0 1 Y N N N N N -9.584 7.788 15.174 6.837 5.841 0.531 C25 L4F 19 L4F C29 C20 C 0 1 N N N N N N -6.619 3.372 17.744 5.320 -2.600 0.711 C29 L4F 20 L4F C30 C21 C 0 1 N N N N N N -5.247 3.532 18.404 3.990 -3.331 0.904 C30 L4F 21 L4F C31 C22 C 0 1 Y N N N N N -5.128 4.850 19.162 4.207 -4.815 0.757 C31 L4F 22 L4F C32 C23 C 0 1 Y N N N N N -5.987 5.125 20.207 4.523 -5.581 1.864 C32 L4F 23 L4F C33 C24 C 0 1 Y N N N N N -5.878 6.320 20.889 4.723 -6.942 1.729 C33 L4F 24 L4F C34 C25 C 0 1 Y N N N N N -4.908 7.229 20.523 4.606 -7.538 0.488 C34 L4F 25 L4F C35 C26 C 0 1 Y N N N N N -4.051 6.952 19.474 4.289 -6.773 -0.619 C35 L4F 26 L4F C36 C27 C 0 1 Y N N N N N -4.161 5.759 18.795 4.084 -5.412 -0.484 C36 L4F 27 L4F C38 C28 C 0 1 N N N N N N -3.536 0.743 13.441 2.267 1.283 -1.457 C38 L4F 28 L4F C39 C29 C 0 1 Y N N N N N -2.773 1.158 12.186 1.469 1.744 -2.649 C39 L4F 29 L4F C40 C30 C 0 1 Y N N N N N -1.547 0.581 11.897 0.189 2.236 -2.474 C40 L4F 30 L4F C41 C31 C 0 1 Y N N N N N -0.858 0.954 10.760 -0.544 2.658 -3.568 C41 L4F 31 L4F C42 C32 C 0 1 Y N N N N N -1.389 1.906 9.913 0.003 2.588 -4.835 C42 L4F 32 L4F C43 C33 C 0 1 Y N N N N N -2.608 2.486 10.198 1.283 2.097 -5.009 C43 L4F 33 L4F C44 C34 C 0 1 Y N N N N N -3.300 2.111 11.342 2.018 1.680 -3.915 C44 L4F 34 L4F C46 C35 C 0 1 Y N N N N N -1.205 5.853 22.838 -8.311 -0.524 1.077 C46 L4F 35 L4F C47 C36 C 0 1 Y N N N N N -1.261 6.885 23.767 -9.203 -0.099 2.066 C47 L4F 36 L4F C48 C37 C 0 1 Y N N N N N -2.497 7.331 24.240 -10.082 0.927 1.804 C48 L4F 37 L4F C49 C38 C 0 1 Y N N N N N -3.667 6.745 23.791 -10.084 1.541 0.555 C49 L4F 38 L4F C51 C39 C 0 1 N N N N N N -5.612 6.551 25.139 -11.328 3.454 1.295 C51 L4F 39 L4F C54 C40 C 0 1 Y N N N N N -3.605 5.714 22.863 -9.197 1.121 -0.433 C54 L4F 40 L4F C55 C41 C 0 1 Y N N N N N -2.374 5.266 22.386 -8.311 0.100 -0.174 C55 L4F 41 L4F N06 N1 N 0 1 N N N N N N 0.759 2.956 18.943 -3.870 -2.278 -0.762 N06 L4F 42 L4F N11 N2 N 0 1 N N N N N N -0.636 3.280 16.548 -1.616 -0.789 -1.448 N11 L4F 43 L4F N13 N3 N 0 1 N N N N N N -2.258 1.908 15.154 0.602 -0.397 -0.835 N13 L4F 44 L4F N16 N4 N 0 1 N N N N N N -5.677 2.433 15.786 4.234 -0.617 -0.222 N16 L4F 45 L4F N50 N5 N 0 1 N N N N N N -4.961 7.212 24.287 -10.975 2.579 0.292 N50 L4F 46 L4F N52 N6 N 0 1 N N N N N N -6.898 7.037 25.613 -10.745 3.381 2.458 N52 L4F 47 L4F N53 N7 N 0 1 N N N N N N -5.086 5.296 25.660 -12.296 4.404 1.070 N53 L4F 48 L4F O01 O1 O 0 1 N N N N N N 1.026 6.145 22.135 -7.365 -2.160 2.445 O01 L4F 49 L4F O03 O2 O 0 1 N N N N N N 0.379 3.987 22.071 -6.509 -2.030 0.400 O03 L4F 50 L4F O27 O3 O 0 1 N N N N N N -11.166 3.534 15.998 8.332 1.984 -0.349 O27 L4F 51 L4F O28 O4 O 0 1 N N N N N N -9.809 3.508 17.760 8.667 1.588 2.070 O28 L4F 52 L4F O37 O5 O 0 1 N N N N N N -4.420 0.581 16.275 2.405 -1.159 0.910 O37 L4F 53 L4F O45 O6 O 0 1 N N N N N N -2.686 4.049 15.837 -0.040 -0.390 -2.962 O45 L4F 54 L4F S20 S1 S 0 1 N N N N N N -9.829 3.910 16.375 7.838 1.976 0.983 S20 L4F 55 L4F H1 H1 H 0 1 N N N N N N 0.771 4.752 16.855 -2.161 -1.125 -3.453 H1 L4F 56 L4F H2 H2 H 0 1 N N N N N N -0.936 5.226 17.150 -3.354 -0.216 -2.491 H2 L4F 57 L4F H3 H3 H 0 1 N N N N N N -6.286 1.272 17.425 4.626 -0.888 1.821 H3 L4F 58 L4F H4 H4 H 0 1 N N N N N N -8.522 5.679 18.210 7.706 3.466 3.427 H4 L4F 59 L4F H5 H5 H 0 1 N N N N N N -8.701 9.440 16.202 6.603 7.343 2.035 H5 L4F 60 L4F H6 H6 H 0 1 N N N N N N -10.382 5.966 14.378 7.137 4.152 -0.744 H6 L4F 61 L4F H7 H7 H 0 1 N N N N N N 2.250 3.309 21.519 -6.190 -4.000 1.011 H7 L4F 62 L4F H8 H8 H 0 1 N N N N N N 1.542 4.586 20.473 -4.988 -2.821 1.590 H8 L4F 63 L4F H9 H9 H 0 1 N N N N N N -0.325 2.433 20.442 -4.085 -4.296 -0.220 H9 L4F 64 L4F H10 H10 H 0 1 N N N N N N 1.295 1.675 20.272 -5.339 -3.672 -1.320 H10 L4F 65 L4F H11 H11 H 0 1 N N N N N N -0.542 1.471 18.450 -2.084 -2.994 0.083 H11 L4F 66 L4F H12 H12 H 0 1 N N N N N N 1.202 1.098 18.238 -3.176 -2.165 1.218 H12 L4F 67 L4F H13 H13 H 0 1 N N N N N N 0.030 1.391 16.052 -2.680 -0.001 0.188 H13 L4F 68 L4F H14 H14 H 0 1 N N N N N N 1.306 2.631 16.296 -1.143 -0.798 0.604 H14 L4F 69 L4F H15 H15 H 0 1 N N N N N N 0.436 4.941 19.248 -4.194 -2.489 -2.827 H15 L4F 70 L4F H16 H16 H 0 1 N N N N N N -1.027 3.902 19.174 -2.666 -3.179 -2.229 H16 L4F 71 L4F H17 H17 H 0 1 N N N N N N -3.786 2.795 14.011 2.218 -0.766 -2.120 H17 L4F 72 L4F H18 H18 H 0 1 N N N N N N -8.697 1.657 17.072 7.121 -0.788 1.540 H18 L4F 73 L4F H19 H19 H 0 1 N N N N N N -7.920 0.975 15.603 6.879 -0.503 -0.200 H19 L4F 74 L4F H20 H20 H 0 1 N N N N N N -7.737 3.723 15.162 5.566 1.537 0.316 H20 L4F 75 L4F H21 H21 H 0 1 N N N N N N -8.998 2.637 14.486 5.808 1.251 2.056 H21 L4F 76 L4F H22 H22 H 0 1 N N N N N N -8.008 8.092 18.139 7.159 5.821 3.889 H22 L4F 77 L4F H23 H23 H 0 1 N N N N N N -9.884 8.381 14.323 6.596 6.509 -0.282 H23 L4F 78 L4F H24 H24 H 0 1 N N N N N N -6.842 4.266 17.142 5.711 -2.813 -0.284 H24 L4F 79 L4F H25 H25 H 0 1 N N N N N N -7.387 3.253 18.522 6.033 -2.939 1.462 H25 L4F 80 L4F H26 H26 H 0 1 N N N N N N -5.093 2.702 19.109 3.599 -3.118 1.899 H26 L4F 81 L4F H27 H27 H 0 1 N N N N N N -4.472 3.500 17.624 3.276 -2.993 0.153 H27 L4F 82 L4F H28 H28 H 0 1 N N N N N N -6.742 4.407 20.490 4.615 -5.115 2.834 H28 L4F 83 L4F H29 H29 H 0 1 N N N N N N -6.549 6.542 21.705 4.970 -7.540 2.594 H29 L4F 84 L4F H30 H30 H 0 1 N N N N N N -4.817 8.162 21.059 4.762 -8.601 0.382 H30 L4F 85 L4F H31 H31 H 0 1 N N N N N N -3.297 7.670 19.188 4.198 -7.239 -1.589 H31 L4F 86 L4F H32 H32 H 0 1 N N N N N N -3.491 5.537 17.977 3.833 -4.815 -1.348 H32 L4F 87 L4F H33 H33 H 0 1 N N N N N N -4.576 0.513 13.166 1.970 1.854 -0.577 H33 L4F 88 L4F H34 H34 H 0 1 N N N N N N -3.062 -0.154 13.866 3.329 1.437 -1.649 H34 L4F 89 L4F H35 H35 H 0 1 N N N N N N -1.130 -0.161 12.562 -0.239 2.290 -1.484 H35 L4F 90 L4F H36 H36 H 0 1 N N N N N N 0.096 0.501 10.533 -1.544 3.042 -3.432 H36 L4F 91 L4F H37 H37 H 0 1 N N N N N N -0.849 2.198 9.025 -0.571 2.914 -5.690 H37 L4F 92 L4F H38 H38 H 0 1 N N N N N N -3.023 3.229 9.533 1.711 2.042 -6.000 H38 L4F 93 L4F H39 H39 H 0 1 N N N N N N -4.252 2.567 11.570 3.019 1.296 -4.051 H39 L4F 94 L4F H40 H40 H 0 1 N N N N N N -0.349 7.342 24.123 -9.203 -0.576 3.036 H40 L4F 95 L4F H41 H41 H 0 1 N N N N N N -2.540 8.136 24.959 -10.771 1.255 2.567 H41 L4F 96 L4F H42 H42 H 0 1 N N N N N N -4.517 5.256 22.508 -9.202 1.599 -1.401 H42 L4F 97 L4F H43 H43 H 0 1 N N N N N N -2.333 4.463 21.665 -7.620 -0.223 -0.939 H43 L4F 98 L4F H45 H45 H 0 1 N N N N N N -1.621 1.137 15.144 0.351 -0.435 0.101 H45 L4F 99 L4F H46 H46 H 0 1 N N N N N N -5.794 3.237 15.203 4.626 -0.245 -1.028 H46 L4F 100 L4F H47 H47 H 0 1 N N N N N N -5.336 8.073 23.943 -11.347 2.685 -0.597 H47 L4F 101 L4F H48 H48 H 0 1 N N N N N N -7.307 6.420 26.286 -10.993 3.997 3.165 H48 L4F 102 L4F H49 H49 H 0 1 N N N N N N -5.608 4.778 26.337 -12.544 5.021 1.776 H49 L4F 103 L4F H50 H50 H 0 1 N N N N N N -4.203 4.953 25.341 -12.730 4.458 0.204 H50 L4F 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L4F C42 C43 DOUB Y N 1 L4F C42 C41 SING Y N 2 L4F C43 C44 SING Y N 3 L4F C41 C40 DOUB Y N 4 L4F C44 C39 DOUB Y N 5 L4F C40 C39 SING Y N 6 L4F C39 C38 SING N N 7 L4F C38 C14 SING N N 8 L4F C14 N13 SING N N 9 L4F C14 C15 SING N N 10 L4F N13 C12 SING N N 11 L4F C25 C26 DOUB Y N 12 L4F C25 C24 SING Y N 13 L4F C26 C21 SING Y N 14 L4F C19 C18 SING N N 15 L4F C19 S20 SING N N 16 L4F C15 N16 SING N N 17 L4F C15 O37 DOUB N N 18 L4F N16 C17 SING N N 19 L4F O45 C12 DOUB N N 20 L4F C12 N11 SING N N 21 L4F O27 S20 DOUB N N 22 L4F C24 C23 DOUB Y N 23 L4F C18 C17 SING N N 24 L4F C21 S20 SING N N 25 L4F C21 C22 DOUB Y N 26 L4F S20 O28 DOUB N N 27 L4F N11 C08 SING N N 28 L4F N11 C10 SING N N 29 L4F C08 C07 SING N N 30 L4F C17 C29 SING N N 31 L4F C10 C09 SING N N 32 L4F C23 C22 SING Y N 33 L4F C29 C30 SING N N 34 L4F C07 N06 SING N N 35 L4F C30 C31 SING N N 36 L4F C09 N06 SING N N 37 L4F C36 C31 DOUB Y N 38 L4F C36 C35 SING Y N 39 L4F N06 C05 SING N N 40 L4F C31 C32 SING Y N 41 L4F C35 C34 DOUB Y N 42 L4F C05 C04 SING N N 43 L4F C32 C33 DOUB Y N 44 L4F C34 C33 SING Y N 45 L4F C04 O03 SING N N 46 L4F O03 C02 SING N N 47 L4F O01 C02 DOUB N N 48 L4F C02 C46 SING N N 49 L4F C55 C46 DOUB Y N 50 L4F C55 C54 SING Y N 51 L4F C46 C47 SING Y N 52 L4F C54 C49 DOUB Y N 53 L4F C47 C48 DOUB Y N 54 L4F C49 C48 SING Y N 55 L4F C49 N50 SING N N 56 L4F N50 C51 SING N N 57 L4F C51 N52 DOUB N N 58 L4F C51 N53 SING N N 59 L4F C10 H1 SING N N 60 L4F C10 H2 SING N N 61 L4F C17 H3 SING N N 62 L4F C22 H4 SING N N 63 L4F C24 H5 SING N N 64 L4F C26 H6 SING N N 65 L4F C04 H7 SING N N 66 L4F C04 H8 SING N N 67 L4F C05 H9 SING N N 68 L4F C05 H10 SING N N 69 L4F C07 H11 SING N N 70 L4F C07 H12 SING N N 71 L4F C08 H13 SING N N 72 L4F C08 H14 SING N N 73 L4F C09 H15 SING N N 74 L4F C09 H16 SING N N 75 L4F C14 H17 SING N N 76 L4F C18 H18 SING N N 77 L4F C18 H19 SING N N 78 L4F C19 H20 SING N N 79 L4F C19 H21 SING N N 80 L4F C23 H22 SING N N 81 L4F C25 H23 SING N N 82 L4F C29 H24 SING N N 83 L4F C29 H25 SING N N 84 L4F C30 H26 SING N N 85 L4F C30 H27 SING N N 86 L4F C32 H28 SING N N 87 L4F C33 H29 SING N N 88 L4F C34 H30 SING N N 89 L4F C35 H31 SING N N 90 L4F C36 H32 SING N N 91 L4F C38 H33 SING N N 92 L4F C38 H34 SING N N 93 L4F C40 H35 SING N N 94 L4F C41 H36 SING N N 95 L4F C42 H37 SING N N 96 L4F C43 H38 SING N N 97 L4F C44 H39 SING N N 98 L4F C47 H40 SING N N 99 L4F C48 H41 SING N N 100 L4F C54 H42 SING N N 101 L4F C55 H43 SING N N 102 L4F N13 H45 SING N N 103 L4F N16 H46 SING N N 104 L4F N50 H47 SING N N 105 L4F N52 H48 SING N N 106 L4F N53 H49 SING N N 107 L4F N53 H50 SING N N 108 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L4F InChI InChI 1.06 "InChI=1S/C41H49N7O6S/c42-40(43)45-34-20-17-33(18-21-34)39(50)54-28-27-47-23-25-48(26-24-47)41(51)46-37(30-32-12-6-2-7-13-32)38(49)44-35(19-16-31-10-4-1-5-11-31)22-29-55(52,53)36-14-8-3-9-15-36/h1-15,17-18,20-21,35,37H,16,19,22-30H2,(H,44,49)(H,46,51)(H4,42,43,45)/t35-,37-/m0/s1" L4F InChIKey InChI 1.06 GRAYNEZFLQHYCO-JSXFGMRASA-N L4F SMILES_CANONICAL CACTVS 3.385 "NC(=N)Nc1ccc(cc1)C(=O)OCCN2CCN(CC2)C(=O)N[C@@H](Cc3ccccc3)C(=O)N[C@@H](CCc4ccccc4)CC[S](=O)(=O)c5ccccc5" L4F SMILES CACTVS 3.385 "NC(=N)Nc1ccc(cc1)C(=O)OCCN2CCN(CC2)C(=O)N[CH](Cc3ccccc3)C(=O)N[CH](CCc4ccccc4)CC[S](=O)(=O)c5ccccc5" L4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\Nc1ccc(cc1)C(=O)OCCN2CCN(CC2)C(=O)N[C@@H](Cc3ccccc3)C(=O)N[C@@H](CCc4ccccc4)CCS(=O)(=O)c5ccccc5" L4F SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC(CCS(=O)(=O)c2ccccc2)NC(=O)C(Cc3ccccc3)NC(=O)N4CCN(CC4)CCOC(=O)c5ccc(cc5)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id L4F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[[(2~{S})-1-oxidanylidene-3-phenyl-1-[[(3~{S})-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]amino]propan-2-yl]carbamoyl]piperazin-1-yl]ethyl 4-carbamimidamidobenzoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L4F "Create component" 2022-11-10 PDBJ L4F "Modify coordinates" 2022-12-21 PDBJ L4F "Initial release" 2023-12-13 RCSB #