data_L56 # _chem_comp.id L56 _chem_comp.name "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-03 _chem_comp.pdbx_modified_date 2016-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.329 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L56 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JO0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L56 O8 O1 O 0 1 N N N -0.820 16.364 20.119 3.113 1.547 0.442 O8 L56 1 L56 P5 P1 P 0 1 N N N -0.720 15.838 21.494 1.780 1.855 -0.123 P5 L56 2 L56 O7 O2 O 0 1 N N N 0.176 16.716 22.307 0.764 2.221 1.071 O7 L56 3 L56 O6 O3 O 0 1 N N N -2.100 15.793 22.123 1.900 3.106 -1.129 O6 L56 4 L56 C1 C1 C 0 1 N N N -0.035 14.156 21.460 1.154 0.403 -1.030 C1 L56 5 L56 C2 C2 C 0 1 N N R 1.034 14.067 20.364 1.030 -0.783 -0.071 C2 L56 6 L56 C3 C3 C 0 1 N N N 2.265 13.243 20.851 2.362 -0.996 0.651 C3 L56 7 L56 C4 C4 C 0 1 N N N 3.525 13.852 20.256 3.425 -1.360 -0.354 C4 L56 8 L56 N9 N1 N 0 1 N N N 4.108 13.325 19.138 4.711 -1.467 0.036 N9 L56 9 L56 C11 C5 C 0 1 N N N 3.617 12.082 18.517 5.745 -1.821 -0.941 C11 L56 10 L56 O10 O4 O 0 1 N N N 5.224 13.964 18.583 5.063 -1.239 1.388 O10 L56 11 L56 O12 O5 O 0 1 N N N 3.950 14.882 20.745 3.124 -1.556 -1.512 O12 L56 12 L56 C13 C6 C 0 1 N N N 0.435 13.472 19.050 -0.066 -0.495 0.956 C13 L56 13 L56 C14 C7 C 0 1 N N N -0.158 12.061 19.258 -1.419 -0.405 0.247 C14 L56 14 L56 C15 C8 C 0 1 N N N -0.571 11.463 17.897 -2.516 -0.118 1.274 C15 L56 15 L56 C16 C9 C 0 1 Y N N 0.636 10.909 17.167 -3.848 -0.030 0.575 C16 L56 16 L56 C18 C10 C 0 1 Y N N 1.129 11.556 16.024 -4.295 1.186 0.093 C18 L56 17 L56 C20 C11 C 0 1 Y N N 2.235 11.041 15.341 -5.515 1.266 -0.553 C20 L56 18 L56 C21 C12 C 0 1 Y N N 2.835 9.866 15.812 -6.287 0.131 -0.716 C21 L56 19 L56 C19 C13 C 0 1 Y N N 2.329 9.222 16.948 -5.839 -1.085 -0.234 C19 L56 20 L56 C17 C14 C 0 1 Y N N 1.231 9.739 17.612 -4.620 -1.165 0.412 C17 L56 21 L56 C22 C15 C 0 1 N N N 2.974 7.950 17.450 -6.680 -2.322 -0.412 C22 L56 22 L56 H1 H1 H 0 1 N N N 0.494 17.430 21.768 -0.132 2.435 0.773 H1 L56 23 L56 H2 H2 H 0 1 N N N -2.743 16.113 21.501 2.227 3.915 -0.714 H2 L56 24 L56 H3 H3 H 0 1 N N N -0.839 13.436 21.249 0.176 0.632 -1.452 H3 L56 25 L56 H4 H4 H 0 1 N N N 0.418 13.924 22.435 1.847 0.150 -1.833 H4 L56 26 L56 H5 H5 H 0 1 N N N 1.380 15.087 20.142 0.774 -1.680 -0.634 H5 L56 27 L56 H6 H6 H 0 1 N N N 2.166 12.199 20.519 2.647 -0.079 1.166 H6 L56 28 L56 H7 H7 H 0 1 N N N 2.321 13.275 21.949 2.257 -1.803 1.377 H7 L56 29 L56 H8 H8 H 0 1 N N N 2.742 11.715 19.073 6.147 -0.912 -1.389 H8 L56 30 L56 H9 H9 H 0 1 N N N 3.331 12.282 17.474 6.546 -2.365 -0.441 H9 L56 31 L56 H10 H10 H 0 1 N N N 4.412 11.322 18.541 5.310 -2.448 -1.719 H10 L56 32 L56 H11 H11 H 0 1 N N N 5.430 14.740 19.091 6.008 -1.339 1.571 H11 L56 33 L56 H12 H12 H 0 1 N N N 1.232 13.412 18.294 -0.095 -1.299 1.692 H12 L56 34 L56 H13 H13 H 0 1 N N N -0.362 14.140 18.691 0.144 0.449 1.458 H13 L56 35 L56 H14 H14 H 0 1 N N N -1.041 12.128 19.911 -1.391 0.398 -0.489 H14 L56 36 L56 H15 H15 H 0 1 N N N 0.597 11.413 19.728 -1.630 -1.350 -0.255 H15 L56 37 L56 H16 H16 H 0 1 N N N -1.035 12.249 17.283 -2.544 -0.922 2.010 H16 L56 38 L56 H17 H17 H 0 1 N N N -1.296 10.652 18.064 -2.305 0.826 1.776 H17 L56 39 L56 H18 H18 H 0 1 N N N 0.651 12.457 15.669 -3.693 2.073 0.220 H18 L56 40 L56 H19 H19 H 0 1 N N N 2.620 11.541 14.465 -5.865 2.216 -0.929 H19 L56 41 L56 H20 H20 H 0 1 N N N 3.691 9.455 15.297 -7.240 0.194 -1.220 H20 L56 42 L56 H21 H21 H 0 1 N N N 0.837 9.230 18.479 -4.268 -2.115 0.785 H21 L56 43 L56 H22 H22 H 0 1 N N N 3.763 8.200 18.175 -6.420 -2.806 -1.354 H22 L56 44 L56 H23 H23 H 0 1 N N N 2.214 7.321 17.937 -6.495 -3.010 0.413 H23 L56 45 L56 H24 H24 H 0 1 N N N 3.414 7.403 16.603 -7.735 -2.046 -0.425 H24 L56 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L56 C20 C21 DOUB Y N 1 L56 C20 C18 SING Y N 2 L56 C21 C19 SING Y N 3 L56 C18 C16 DOUB Y N 4 L56 C19 C22 SING N N 5 L56 C19 C17 DOUB Y N 6 L56 C16 C17 SING Y N 7 L56 C16 C15 SING N N 8 L56 C15 C14 SING N N 9 L56 C11 N9 SING N N 10 L56 O10 N9 SING N N 11 L56 C13 C14 SING N N 12 L56 C13 C2 SING N N 13 L56 N9 C4 SING N N 14 L56 O8 P5 DOUB N N 15 L56 C4 O12 DOUB N N 16 L56 C4 C3 SING N N 17 L56 C2 C3 SING N N 18 L56 C2 C1 SING N N 19 L56 C1 P5 SING N N 20 L56 P5 O6 SING N N 21 L56 P5 O7 SING N N 22 L56 O7 H1 SING N N 23 L56 O6 H2 SING N N 24 L56 C1 H3 SING N N 25 L56 C1 H4 SING N N 26 L56 C2 H5 SING N N 27 L56 C3 H6 SING N N 28 L56 C3 H7 SING N N 29 L56 C11 H8 SING N N 30 L56 C11 H9 SING N N 31 L56 C11 H10 SING N N 32 L56 O10 H11 SING N N 33 L56 C13 H12 SING N N 34 L56 C13 H13 SING N N 35 L56 C14 H14 SING N N 36 L56 C14 H15 SING N N 37 L56 C15 H16 SING N N 38 L56 C15 H17 SING N N 39 L56 C18 H18 SING N N 40 L56 C20 H19 SING N N 41 L56 C21 H20 SING N N 42 L56 C17 H21 SING N N 43 L56 C22 H22 SING N N 44 L56 C22 H23 SING N N 45 L56 C22 H24 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L56 SMILES ACDLabs 12.01 "O=P(O)(O)CC(CC(=O)N(C)O)CCCc1cc(ccc1)C" L56 InChI InChI 1.03 "InChI=1S/C15H24NO5P/c1-12-5-3-6-13(9-12)7-4-8-14(11-22(19,20)21)10-15(17)16(2)18/h3,5-6,9,14,18H,4,7-8,10-11H2,1-2H3,(H2,19,20,21)/t14-/m1/s1" L56 InChIKey InChI 1.03 LKGTWQXFDFYGBW-CQSZACIVSA-N L56 SMILES_CANONICAL CACTVS 3.385 "CN(O)C(=O)C[C@@H](CCCc1cccc(C)c1)C[P](O)(O)=O" L56 SMILES CACTVS 3.385 "CN(O)C(=O)C[CH](CCCc1cccc(C)c1)C[P](O)(O)=O" L56 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1cccc(c1)CCC[C@H](CC(=O)N(C)O)CP(=O)(O)O" L56 SMILES "OpenEye OEToolkits" 2.0.4 "Cc1cccc(c1)CCCC(CC(=O)N(C)O)CP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L56 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(3-methylphenyl)pentyl]phosphonic acid" L56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R})-2-[2-[methyl(oxidanyl)amino]-2-oxidanylidene-ethyl]-5-(3-methylphenyl)pentyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L56 "Create component" 2016-05-03 EBI L56 "Initial release" 2016-08-23 RCSB #