data_L6D # _chem_comp.id L6D _chem_comp.name "N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 Cl N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.728 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L6D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GBX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L6D N1 N1 N 0 1 Y N N N N N 7.585 -0.335 19.466 -2.212 0.033 -0.067 N1 L6D 1 L6D C4 C1 C 0 1 Y N N N N N 11.068 -0.678 22.726 2.509 1.054 0.141 C4 L6D 2 L6D C5 C2 C 0 1 N N N N N N 9.582 -0.867 22.535 1.183 1.454 0.736 C5 L6D 3 L6D C6 C3 C 0 1 N N N N N N 9.133 -0.215 21.241 0.087 0.622 0.122 C6 L6D 4 L6D C7 C4 C 0 1 Y N N N N N 7.945 -0.297 18.159 -2.058 -0.938 -1.008 C7 L6D 5 L6D C8 C5 C 0 1 Y N N N N N 6.160 0.883 18.315 -4.188 -0.849 -0.586 C8 L6D 6 L6D C10 C6 C 0 1 Y N N N N N 4.399 2.240 19.211 -6.305 -0.233 0.342 C10 L6D 7 L6D C13 C7 C 0 1 Y N N N N N 6.411 0.402 19.601 -3.559 0.111 0.225 C13 L6D 8 L6D O O1 O 0 1 N N N N N N 9.509 0.909 20.921 0.355 -0.213 -0.716 O L6D 9 L6D C3 C8 C 0 1 Y N N N N N 11.556 0.258 23.629 2.978 1.691 -0.992 C3 L6D 10 L6D C2 C9 C 0 1 Y N N N N N 12.896 0.612 23.628 4.195 1.325 -1.538 C2 L6D 11 L6D C1 C10 C 0 1 Y N N N N N 13.775 0.016 22.734 4.943 0.323 -0.950 C1 L6D 12 L6D C14 C11 C 0 1 Y N N N N N 11.961 -1.318 21.872 3.259 0.055 0.734 C14 L6D 13 L6D C C12 C 0 1 Y N N N N N 13.293 -0.961 21.886 4.474 -0.315 0.185 C L6D 14 L6D CL CL1 CL 0 0 N N N N N N 14.395 -1.784 20.815 5.417 -1.569 0.928 CL L6D 15 L6D N N2 N 0 1 N N N N N N 8.276 -0.946 20.505 -1.193 0.806 0.504 N L6D 16 L6D N2 N3 N 0 1 Y N N N N N 7.128 0.411 17.421 -3.212 -1.456 -1.309 N2 L6D 17 L6D C12 C13 C 0 1 Y N N N N N 5.684 0.827 20.706 -4.318 0.890 1.088 C12 L6D 18 L6D C11 C14 C 0 1 Y N N N N N 4.671 1.756 20.493 -5.685 0.715 1.143 C11 L6D 19 L6D C9 C15 C 0 1 Y N N N N N 5.138 1.809 18.113 -5.574 -1.009 -0.513 C9 L6D 20 L6D H1 H1 H 0 1 N N N N N N 9.046 -0.408 23.378 1.204 1.289 1.813 H1 L6D 21 L6D H2 H2 H 0 1 N N N N N N 9.354 -1.943 22.498 0.997 2.508 0.533 H2 L6D 22 L6D H3 H3 H 0 1 N N N N N N 8.817 -0.800 17.767 -1.114 -1.234 -1.441 H3 L6D 23 L6D H4 H4 H 0 1 N N N N N N 3.605 2.958 19.070 -7.376 -0.359 0.395 H4 L6D 24 L6D H5 H5 H 0 1 N N N N N N 10.884 0.715 24.340 2.393 2.474 -1.452 H5 L6D 25 L6D H6 H6 H 0 1 N N N N N N 13.257 1.354 24.325 4.560 1.823 -2.424 H6 L6D 26 L6D H7 H7 H 0 1 N N N N N N 14.814 0.310 22.703 5.893 0.038 -1.377 H7 L6D 27 L6D H8 H8 H 0 1 N N N N N N 11.613 -2.090 21.202 2.893 -0.442 1.619 H8 L6D 28 L6D H9 H9 H 0 1 N N N N N N 8.138 -1.916 20.703 -1.408 1.474 1.174 H9 L6D 29 L6D H10 H10 H 0 1 N N N N N N 5.898 0.450 21.695 -3.840 1.629 1.714 H10 L6D 30 L6D H11 H11 H 0 1 N N N N N N 4.087 2.108 21.330 -6.276 1.320 1.814 H11 L6D 31 L6D H12 H12 H 0 1 N N N N N N 4.924 2.185 17.123 -6.067 -1.744 -1.132 H12 L6D 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L6D N2 C7 DOUB Y N 1 L6D N2 C8 SING Y N 2 L6D C9 C8 DOUB Y N 3 L6D C9 C10 SING Y N 4 L6D C7 N1 SING Y N 5 L6D C8 C13 SING Y N 6 L6D C10 C11 DOUB Y N 7 L6D N1 C13 SING Y N 8 L6D N1 N SING N N 9 L6D C13 C12 DOUB Y N 10 L6D C11 C12 SING Y N 11 L6D N C6 SING N N 12 L6D CL C SING N N 13 L6D O C6 DOUB N N 14 L6D C6 C5 SING N N 15 L6D C14 C DOUB Y N 16 L6D C14 C4 SING Y N 17 L6D C C1 SING Y N 18 L6D C5 C4 SING N N 19 L6D C4 C3 DOUB Y N 20 L6D C1 C2 DOUB Y N 21 L6D C2 C3 SING Y N 22 L6D C5 H1 SING N N 23 L6D C5 H2 SING N N 24 L6D C7 H3 SING N N 25 L6D C10 H4 SING N N 26 L6D C3 H5 SING N N 27 L6D C2 H6 SING N N 28 L6D C1 H7 SING N N 29 L6D C14 H8 SING N N 30 L6D N H9 SING N N 31 L6D C12 H10 SING N N 32 L6D C11 H11 SING N N 33 L6D C9 H12 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L6D SMILES ACDLabs 12.01 "Clc1cccc(c1)CC(=O)Nn1cnc2ccccc21" L6D InChI InChI 1.06 "InChI=1S/C15H12ClN3O/c16-12-5-3-4-11(8-12)9-15(20)18-19-10-17-13-6-1-2-7-14(13)19/h1-8,10H,9H2,(H,18,20)" L6D InChIKey InChI 1.06 YHLCUCKEOZVUDL-UHFFFAOYSA-N L6D SMILES_CANONICAL CACTVS 3.385 "Clc1cccc(CC(=O)Nn2cnc3ccccc23)c1" L6D SMILES CACTVS 3.385 "Clc1cccc(CC(=O)Nn2cnc3ccccc23)c1" L6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)Cc3cccc(c3)Cl" L6D SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)Cc3cccc(c3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L6D "SYSTEMATIC NAME" ACDLabs 12.01 "N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide" L6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(benzimidazol-1-yl)-2-(3-chlorophenyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L6D "Create component" 2023-08-15 RCSB L6D "Initial release" 2023-11-08 RCSB #