data_L6H # _chem_comp.id L6H _chem_comp.name "[2-[3-(cyclooct-4-en-1-yloxycarbonylamino)propylamino]-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-2-enoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 542.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L6H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SC7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L6H C10 C1 C 0 1 N N N N N N -41.243 59.368 56.585 10.257 0.382 0.862 C10 L6H 1 L6H C15 C2 C 0 1 N N N N N N -42.253 60.069 61.474 5.700 2.143 0.292 C15 L6H 2 L6H C17 C3 C 0 1 N N N N N N -44.721 60.257 60.799 3.287 1.710 0.095 C17 L6H 3 L6H C20 C4 C 0 1 N N N N N N -48.200 59.845 62.123 -0.256 0.976 -0.913 C20 L6H 4 L6H C21 C5 C 0 1 N N N N N N -48.974 58.530 62.264 -1.493 0.885 -0.058 C21 L6H 5 L6H C24 C6 C 0 1 N N N N N N -49.386 58.715 58.956 -5.095 0.195 -0.675 C24 L6H 6 L6H C01 C7 C 0 1 N N N N N N -40.691 59.165 54.107 12.616 -0.342 1.142 C01 L6H 7 L6H C02 C8 C 0 1 N N N N N N -39.776 58.403 53.173 13.445 -1.621 1.059 C02 L6H 8 L6H C03 C9 C 0 1 N N N N N N -40.037 56.897 53.234 13.399 -2.129 -0.387 C03 L6H 9 L6H C04 C10 C 0 1 N N N N N N -39.837 56.339 54.661 11.984 -2.624 -0.676 C04 L6H 10 L6H C05 C11 C 0 1 N N N N N N -40.381 57.283 55.777 10.965 -1.579 -0.294 C05 L6H 11 L6H C06 C12 C 0 1 N N N N N N -40.761 58.566 55.511 11.252 -0.549 0.535 C06 L6H 12 L6H C08 C13 C 0 1 N N N N N N -40.902 57.495 58.063 8.731 -0.844 -0.550 C08 L6H 13 L6H C09 C14 C 0 1 N N N N N N -41.315 58.813 57.860 8.982 0.244 0.326 C09 L6H 14 L6H C11 C15 C 0 1 N N N N N N -41.826 59.673 59.017 7.917 1.202 0.660 C11 L6H 15 L6H C16 C16 C 0 1 N N N N N N -43.702 59.749 61.825 4.466 1.825 -0.512 C16 L6H 16 L6H N07 N1 N 0 1 N N N N N N -40.458 56.784 57.037 9.717 -1.712 -0.825 N07 L6H 17 L6H N14 N2 N 0 1 N N N N N N -41.751 59.209 60.397 6.721 1.123 0.043 N14 L6H 18 L6H O12 O1 O 0 1 N N N N N N -40.961 56.928 59.338 7.625 -0.995 -1.040 O12 L6H 19 L6H O13 O2 O 0 1 N N N N N N -42.295 60.730 58.775 8.116 2.066 1.493 O13 L6H 20 L6H C18 C17 C 0 1 N N N N N N -46.082 60.579 61.422 2.084 1.400 -0.690 C18 L6H 21 L6H C23 C18 C 0 1 N N N N N N -48.449 57.912 59.863 -3.887 0.519 0.208 C23 L6H 22 L6H C25 C19 C 0 1 N N N N N N -48.781 58.964 57.574 -6.351 0.103 0.193 C25 L6H 23 L6H C27 C20 C 0 1 N N N N N N -46.348 59.484 57.170 -8.729 -0.338 -0.100 C27 L6H 24 L6H C29 C21 C 0 1 N N S N N N -44.743 57.801 56.944 -11.078 -0.748 -0.214 C29 L6H 25 L6H C33 C22 C 0 1 N N N N N N -44.078 57.606 55.559 -11.258 -2.207 0.259 C33 L6H 26 L6H C34 C23 C 0 1 N N N N N N -43.931 54.396 56.842 -14.073 0.667 0.172 C34 L6H 27 L6H C35 C24 C 0 1 N N N N N N -45.043 55.241 57.474 -12.862 0.985 -0.741 C35 L6H 28 L6H C36 C25 C 0 1 N N N N N N -44.589 56.628 57.937 -12.181 -0.328 -1.184 C36 L6H 29 L6H C37 C26 C 0 1 N N N N N N -44.902 56.851 54.515 -12.122 -2.240 1.547 C37 L6H 30 L6H C38 C27 C 0 1 N N N N N N -44.742 55.327 54.586 -13.315 -1.457 1.066 C38 L6H 31 L6H C39 C28 C 0 1 N N N N N N -43.554 54.836 55.422 -13.390 -0.203 1.196 C39 L6H 32 L6H N22 N3 N 0 1 N N N N N N -49.089 57.610 61.137 -2.684 0.607 -0.623 N22 L6H 33 L6H N26 N4 N 0 1 N N N N N N -47.656 59.881 57.663 -7.507 -0.208 -0.652 N26 L6H 34 L6H O19 O3 O 0 1 N N N N N N -46.821 59.585 62.087 0.890 1.284 -0.075 O19 L6H 35 L6H O28 O4 O 0 1 N N N N N N -46.101 58.162 56.775 -9.792 -0.623 -0.877 O28 L6H 36 L6H O30 O5 O 0 1 N N N N N N -46.527 61.677 61.343 2.165 1.249 -1.893 O30 L6H 37 L6H O31 O6 O 0 1 N N N N N N -49.505 58.267 63.291 -1.417 1.062 1.140 O31 L6H 38 L6H O32 O7 O 0 1 N N N N N N -45.479 60.288 57.102 -8.873 -0.198 1.098 O32 L6H 39 L6H H1 H1 H 0 1 N N N N N N -41.548 60.390 56.413 10.479 1.202 1.530 H1 L6H 40 L6H H2 H2 H 0 1 N N N N N N -41.629 59.921 62.368 6.083 3.120 -0.001 H2 L6H 41 L6H H3 H3 H 0 1 N N N N N N -42.188 61.119 61.151 5.449 2.155 1.353 H3 L6H 42 L6H H4 H4 H 0 1 N N N N N N -44.502 60.375 59.748 3.215 1.845 1.164 H4 L6H 43 L6H H6 H6 H 0 1 N N N N N N -48.426 60.496 62.981 -0.092 0.024 -1.417 H6 L6H 44 L6H H7 H7 H 0 1 N N N N N N -48.501 60.348 61.192 -0.384 1.763 -1.656 H7 L6H 45 L6H H8 H8 H 0 1 N N N N N N -49.594 59.685 59.432 -5.223 0.982 -1.418 H8 L6H 46 L6H H9 H9 H 0 1 N N N N N N -50.326 58.157 58.836 -4.931 -0.758 -1.179 H9 L6H 47 L6H H10 H10 H 0 1 N N N N N N -40.325 60.199 54.187 12.503 -0.054 2.187 H10 L6H 48 L6H H11 H11 H 0 1 N N N N N N -41.704 59.167 53.678 13.131 0.454 0.604 H11 L6H 49 L6H H12 H12 H 0 1 N N N N N N -38.732 58.596 53.460 14.476 -1.410 1.342 H12 L6H 50 L6H H13 H13 H 0 1 N N N N N N -39.944 58.753 52.144 13.027 -2.375 1.727 H13 L6H 51 L6H H14 H14 H 0 1 N N N N N N -41.072 56.702 52.917 13.651 -1.317 -1.070 H14 L6H 52 L6H H15 H15 H 0 1 N N N N N N -39.342 56.387 52.551 14.108 -2.947 -0.512 H15 L6H 53 L6H H16 H16 H 0 1 N N N N N N -40.360 55.374 54.735 11.891 -2.845 -1.739 H16 L6H 54 L6H H17 H17 H 0 1 N N N N N N -38.761 56.186 54.828 11.799 -3.532 -0.103 H17 L6H 55 L6H H19 H19 H 0 1 N N N N N N -43.985 59.212 62.718 4.538 1.691 -1.581 H19 L6H 56 L6H H21 H21 H 0 1 N N N N N N -41.361 58.313 60.607 6.537 0.390 -0.565 H21 L6H 57 L6H H22 H22 H 0 1 N N N N N N -48.183 56.970 59.362 -4.051 1.471 0.712 H22 L6H 58 L6H H23 H23 H 0 1 N N N N N N -47.537 58.499 60.048 -3.759 -0.268 0.951 H23 L6H 59 L6H H24 H24 H 0 1 N N N N N N -49.549 59.397 56.916 -6.222 -0.684 0.936 H24 L6H 60 L6H H25 H25 H 0 1 N N N N N N -48.435 58.008 57.154 -6.515 1.055 0.698 H25 L6H 61 L6H H26 H26 H 0 1 N N N N N N -44.230 58.657 57.406 -11.097 -0.088 0.653 H26 L6H 62 L6H H27 H27 H 0 1 N N N N N N -43.140 57.051 55.712 -11.753 -2.783 -0.523 H27 L6H 63 L6H H28 H28 H 0 1 N N N N N N -43.852 58.603 55.152 -10.281 -2.643 0.468 H28 L6H 64 L6H H29 H29 H 0 1 N N N N N N -44.269 53.350 56.803 -14.476 1.572 0.627 H29 L6H 65 L6H H30 H30 H 0 1 N N N N N N -43.036 54.469 57.477 -14.845 0.118 -0.367 H30 L6H 66 L6H H31 H31 H 0 1 N N N N N N -45.843 55.370 56.731 -13.205 1.530 -1.621 H31 L6H 67 L6H H32 H32 H 0 1 N N N N N N -45.436 54.698 58.346 -12.146 1.597 -0.194 H32 L6H 68 L6H H33 H33 H 0 1 N N N N N N -43.523 56.555 58.197 -11.748 -0.187 -2.175 H33 L6H 69 L6H H34 H34 H 0 1 N N N N N N -45.169 56.881 58.837 -12.930 -1.118 -1.235 H34 L6H 70 L6H H35 H35 H 0 1 N N N N N N -44.588 57.187 53.516 -12.397 -3.260 1.815 H35 L6H 71 L6H H36 H36 H 0 1 N N N N N N -45.964 57.096 54.667 -11.622 -1.736 2.374 H36 L6H 72 L6H H37 H37 H 0 1 N N N N N N -45.417 54.649 54.084 -14.131 -1.984 0.594 H37 L6H 73 L6H H39 H39 H 0 1 N N N N N N -42.543 54.803 55.045 -12.952 0.260 2.067 H39 L6H 74 L6H H41 H41 H 0 1 N N N N N N -49.612 56.764 61.240 -2.745 0.466 -1.581 H41 L6H 75 L6H H42 H42 H 0 1 N N N N N N -47.783 60.788 58.065 -7.392 -0.320 -1.608 H42 L6H 76 L6H H5 H5 H 0 1 N N N N N N -40.168 55.841 57.197 9.536 -2.455 -1.423 H5 L6H 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L6H C02 C03 SING N N 1 L6H C02 C01 SING N N 2 L6H C03 C04 SING N N 3 L6H C01 C06 SING N N 4 L6H C37 C38 SING N N 5 L6H C37 C33 SING N N 6 L6H C38 C39 DOUB N E 7 L6H C04 C05 SING N N 8 L6H C39 C34 SING N N 9 L6H C06 C05 DOUB N N 10 L6H C06 C10 SING N N 11 L6H C33 C29 SING N N 12 L6H C05 N07 SING N N 13 L6H C10 C09 DOUB N N 14 L6H O28 C29 SING N N 15 L6H O28 C27 SING N N 16 L6H C34 C35 SING N N 17 L6H C29 C36 SING N N 18 L6H N07 C08 SING N N 19 L6H O32 C27 DOUB N N 20 L6H C27 N26 SING N N 21 L6H C35 C36 SING N N 22 L6H C25 N26 SING N N 23 L6H C25 C24 SING N N 24 L6H C09 C08 SING N N 25 L6H C09 C11 SING N N 26 L6H C08 O12 DOUB N N 27 L6H O13 C11 DOUB N N 28 L6H C24 C23 SING N N 29 L6H C11 N14 SING N N 30 L6H C23 N22 SING N N 31 L6H N14 C15 SING N N 32 L6H C17 C18 SING N N 33 L6H C17 C16 DOUB N E 34 L6H N22 C21 SING N N 35 L6H O30 C18 DOUB N N 36 L6H C18 O19 SING N N 37 L6H C15 C16 SING N N 38 L6H O19 C20 SING N N 39 L6H C20 C21 SING N N 40 L6H C21 O31 DOUB N N 41 L6H C10 H1 SING N N 42 L6H C15 H2 SING N N 43 L6H C15 H3 SING N N 44 L6H C17 H4 SING N N 45 L6H C20 H6 SING N N 46 L6H C20 H7 SING N N 47 L6H C24 H8 SING N N 48 L6H C24 H9 SING N N 49 L6H C01 H10 SING N N 50 L6H C01 H11 SING N N 51 L6H C02 H12 SING N N 52 L6H C02 H13 SING N N 53 L6H C03 H14 SING N N 54 L6H C03 H15 SING N N 55 L6H C04 H16 SING N N 56 L6H C04 H17 SING N N 57 L6H C16 H19 SING N N 58 L6H N14 H21 SING N N 59 L6H C23 H22 SING N N 60 L6H C23 H23 SING N N 61 L6H C25 H24 SING N N 62 L6H C25 H25 SING N N 63 L6H C29 H26 SING N N 64 L6H C33 H27 SING N N 65 L6H C33 H28 SING N N 66 L6H C34 H29 SING N N 67 L6H C34 H30 SING N N 68 L6H C35 H31 SING N N 69 L6H C35 H32 SING N N 70 L6H C36 H33 SING N N 71 L6H C36 H34 SING N N 72 L6H C37 H35 SING N N 73 L6H C37 H36 SING N N 74 L6H C38 H37 SING N N 75 L6H C39 H39 SING N N 76 L6H N22 H41 SING N N 77 L6H N26 H42 SING N N 78 L6H N07 H5 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L6H InChI InChI 1.03 "InChI=1S/C28H38N4O7/c33-24(29-16-9-17-31-28(37)39-21-11-4-2-1-3-5-12-21)19-38-25(34)14-8-15-30-26(35)22-18-20-10-6-7-13-23(20)32-27(22)36/h1-2,8,14,18,21H,3-7,9-13,15-17,19H2,(H,29,33)(H,30,35)(H,31,37)(H,32,36)/b2-1?,14-8+/t21-/m1/s1" L6H InChIKey InChI 1.03 XBCNCWLUITUPGM-PESUWNSQSA-N L6H SMILES_CANONICAL CACTVS 3.385 "O=C(COC(=O)\C=C\CNC(=O)C1=CC2=C(CCCC2)NC1=O)NCCCNC(=O)O[C@H]3CCC/C=C/CC3" L6H SMILES CACTVS 3.385 "O=C(COC(=O)C=CCNC(=O)C1=CC2=C(CCCC2)NC1=O)NCCCNC(=O)O[CH]3CCCC=CCC3" L6H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC2=C(C1)C=C(C(=O)N2)C(=O)NC/C=C/C(=O)OCC(=O)NCCCNC(=O)OC3CCCC=CCC3" L6H SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC2=C(C1)C=C(C(=O)N2)C(=O)NCC=CC(=O)OCC(=O)NCCCNC(=O)OC3CCCC=CCC3" # _pdbx_chem_comp_identifier.comp_id L6H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[2-[3-(cyclooct-4-en-1-yloxycarbonylamino)propylamino]-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-2-enoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L6H "Create component" 2019-07-23 EBI L6H "Initial release" 2019-11-27 RCSB L6H "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id L6H _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C16 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #