data_L6S # _chem_comp.id L6S _chem_comp.name 6-O-sulfo-alpha-L-galactopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O9 S" _chem_comp.mon_nstd_parent_comp_id GXL _chem_comp.pdbx_synonyms "6-O-sulfo-alpha-L-galactose; 6-O-sulfo-L-galactose; 6-O-sulfo-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-27 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L6S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ILF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 L6S 6-O-sulfo-alpha-L-galactose PDB ? 2 L6S 6-O-sulfo-L-galactose PDB ? 3 L6S 6-O-sulfo-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L6S O1S O1S O 0 1 N N N 14.338 9.175 4.923 3.343 -0.867 1.118 O1S L6S 1 L6S O2S O2S O 0 1 N N N 12.406 10.293 5.855 4.135 1.289 0.134 O2S L6S 2 L6S O3S O3S O 0 1 N N N 12.255 7.932 5.142 3.861 -0.654 -1.172 O3S L6S 3 L6S C1 C1 C 0 1 N N R 13.687 5.902 10.170 -2.080 1.449 0.488 C1 L6S 4 L6S C2 C2 C 0 1 N N S 12.727 5.782 11.269 -3.135 0.339 0.499 C2 L6S 5 L6S C3 C3 C 0 1 N N R 12.539 7.230 11.684 -2.815 -0.671 -0.607 C3 L6S 6 L6S C4 C4 C 0 1 N N S 12.397 8.267 10.605 -1.398 -1.214 -0.392 C4 L6S 7 L6S C5 C5 C 0 1 N N S 13.152 7.894 9.338 -0.410 -0.044 -0.369 C5 L6S 8 L6S C6 C6 C 0 1 N N N 12.595 8.746 8.208 0.999 -0.573 -0.095 C6 L6S 9 L6S O1 O1 O 0 1 N Y N 15.137 6.029 10.441 -2.131 2.142 -0.761 O1 L6S 10 L6S O2 O2 O 0 1 N N N 13.154 5.014 12.385 -4.427 0.906 0.268 O2 L6S 11 L6S O3 O3 O 0 1 N N N 11.622 7.389 12.778 -3.752 -1.748 -0.557 O3 L6S 12 L6S O4 O4 O 0 1 N N N 11.003 7.849 10.378 -1.339 -1.914 0.852 O4 L6S 13 L6S O5 O5 O 0 1 N N N 13.159 6.485 9.022 -0.784 0.873 0.661 O5 L6S 14 L6S O6 O6 O 0 1 N N N 13.532 8.621 7.133 1.937 0.501 -0.189 O6 L6S 15 L6S S1 S1 S 0 1 N N N 13.112 9.036 5.679 3.379 0.088 0.067 S1 L6S 16 L6S HO3S HO3S H 0 0 N N N 12.686 7.529 4.398 4.776 -0.964 -1.114 HO3S L6S 17 L6S H1 H1 H 0 1 N N N 13.826 4.845 9.898 -2.279 2.148 1.300 H1 L6S 18 L6S H2 H2 H 0 1 N N N 11.826 5.246 10.935 -3.125 -0.164 1.466 H2 L6S 19 L6S H3 H3 H 0 1 N N N 13.541 7.482 12.062 -2.874 -0.179 -1.578 H3 L6S 20 L6S H4 H4 H 0 1 N N N 12.698 9.300 10.833 -1.141 -1.892 -1.206 H4 L6S 21 L6S H5 H5 H 0 1 N N N 14.219 8.106 9.499 -0.427 0.465 -1.333 H5 L6S 22 L6S H61 H6 H 0 1 N N N 11.601 8.388 7.903 1.038 -1.003 0.905 H61 L6S 23 L6S H62 H6A H 0 1 N N N 12.499 9.796 8.522 1.249 -1.338 -0.830 H62 L6S 24 L6S HO1 HO1 H 0 1 N Y N 15.609 6.096 9.619 -1.488 2.860 -0.838 HO1 L6S 25 L6S HO2 HO2 H 0 1 N Y N 12.466 4.996 13.040 -4.693 1.559 0.929 HO2 L6S 26 L6S HO3 HO3 H 0 1 N Y N 11.543 8.311 12.994 -4.672 -1.475 -0.678 HO3 L6S 27 L6S HO4 HO4 H 0 1 N Y N 10.622 8.378 9.687 -1.944 -2.666 0.909 HO4 L6S 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L6S O1S S1 DOUB N N 1 L6S O2S S1 DOUB N N 2 L6S O3S S1 SING N N 3 L6S C1 C2 SING N N 4 L6S C1 O1 SING N N 5 L6S C1 O5 SING N N 6 L6S C2 C3 SING N N 7 L6S C2 O2 SING N N 8 L6S C3 C4 SING N N 9 L6S C3 O3 SING N N 10 L6S C4 C5 SING N N 11 L6S C4 O4 SING N N 12 L6S C5 C6 SING N N 13 L6S C5 O5 SING N N 14 L6S C6 O6 SING N N 15 L6S O6 S1 SING N N 16 L6S O3S HO3S SING N N 17 L6S C1 H1 SING N N 18 L6S C2 H2 SING N N 19 L6S C3 H3 SING N N 20 L6S C4 H4 SING N N 21 L6S C5 H5 SING N N 22 L6S C6 H61 SING N N 23 L6S C6 H62 SING N N 24 L6S O1 HO1 SING N N 25 L6S O2 HO2 SING N N 26 L6S O3 HO3 SING N N 27 L6S O4 HO4 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L6S SMILES ACDLabs 11.02 "O=S(=O)(O)OCC1OC(O)C(O)C(O)C1O" L6S SMILES_CANONICAL CACTVS 3.352 "O[C@@H]1O[C@@H](CO[S](O)(=O)=O)[C@@H](O)[C@@H](O)[C@@H]1O" L6S SMILES CACTVS 3.352 "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O" L6S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O)OS(=O)(=O)O" L6S SMILES "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(C(O1)O)O)O)O)OS(=O)(=O)O" L6S InChI InChI 1.03 "InChI=1S/C6H12O9S/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H,11,12,13)/t2-,3+,4+,5-,6+/m0/s1" L6S InChIKey InChI 1.03 OKUVUONOJCDUJY-SXUWKVJYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier L6S "SYSTEMATIC NAME" ACDLabs 11.02 6-O-sulfo-alpha-L-galactopyranose L6S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2S,3S,4R,5S,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methyl hydrogen sulfate" L6S "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LGalp[6S]a L6S "COMMON NAME" GMML 1.0 6-sulfo-a-L-galactopyranose L6S "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Galp6SO3 # _pdbx_chem_comp_related.comp_id L6S _pdbx_chem_comp_related.related_comp_id GXL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 L6S C1 GXL C1 "Carbohydrate core" 2 L6S C2 GXL C2 "Carbohydrate core" 3 L6S C3 GXL C3 "Carbohydrate core" 4 L6S C4 GXL C4 "Carbohydrate core" 5 L6S C5 GXL C5 "Carbohydrate core" 6 L6S C6 GXL C6 "Carbohydrate core" 7 L6S O1 GXL O1 "Carbohydrate core" 8 L6S O2 GXL O2 "Carbohydrate core" 9 L6S O3 GXL O3 "Carbohydrate core" 10 L6S O4 GXL O4 "Carbohydrate core" 11 L6S O5 GXL O5 "Carbohydrate core" 12 L6S O6 GXL O6 "Carbohydrate core" 13 L6S H1 GXL H1 "Carbohydrate core" 14 L6S H2 GXL H2 "Carbohydrate core" 15 L6S H3 GXL H3 "Carbohydrate core" 16 L6S H4 GXL H4 "Carbohydrate core" 17 L6S H5 GXL H5 "Carbohydrate core" 18 L6S H61 GXL H61 "Carbohydrate core" 19 L6S H62 GXL H62 "Carbohydrate core" 20 L6S HO1 GXL HO1 "Carbohydrate core" 21 L6S HO2 GXL HO2 "Carbohydrate core" 22 L6S HO3 GXL HO3 "Carbohydrate core" 23 L6S HO4 GXL HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support L6S "CARBOHYDRATE ISOMER" L PDB ? L6S "CARBOHYDRATE RING" pyranose PDB ? L6S "CARBOHYDRATE ANOMER" alpha PDB ? L6S "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L6S "Create component" 2009-08-27 PDBJ L6S "Modify descriptor" 2011-06-04 RCSB L6S "Other modification" 2020-07-03 RCSB L6S "Modify parent residue" 2020-07-17 RCSB L6S "Modify name" 2020-07-17 RCSB L6S "Modify synonyms" 2020-07-17 RCSB L6S "Modify linking type" 2020-07-17 RCSB L6S "Modify atom id" 2020-07-17 RCSB L6S "Modify component atom id" 2020-07-17 RCSB L6S "Modify leaving atom flag" 2020-07-17 RCSB ##