data_L7U # _chem_comp.id L7U _chem_comp.name "~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]-1-[(2~{R})-2-(6-methoxynaphthalen-2-yl)propanoyl]piperidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H37 N3 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-20 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.720 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L7U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A68 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L7U C1 C1 C 0 1 N N N -28.833 16.533 -1.405 9.518 -4.365 -1.374 C1 L7U 1 L7U C10 C2 C 0 1 N N N -22.551 22.925 0.792 2.919 2.189 0.484 C10 L7U 2 L7U C11 C3 C 0 1 N N N -23.755 24.430 -0.755 0.683 2.211 1.482 C11 L7U 3 L7U C12 C4 C 0 1 N N N -23.979 24.066 -2.198 -0.575 1.748 0.740 C12 L7U 4 L7U C13 C5 C 0 1 N N N -22.803 24.570 -3.033 -1.079 2.882 -0.156 C13 L7U 5 L7U C14 C6 C 0 1 N N N -22.905 24.204 -4.504 -2.336 2.442 -0.862 C14 L7U 6 L7U C15 C7 C 0 1 N N N -22.887 25.166 -6.836 -4.642 1.656 -0.833 C15 L7U 7 L7U C16 C8 C 0 1 N N N -21.803 24.273 -7.396 -5.713 1.306 0.202 C16 L7U 8 L7U C17 C9 C 0 1 N N N -21.493 23.995 -2.471 -0.008 3.231 -1.191 C17 L7U 9 L7U C18 C10 C 0 1 N N N -21.337 24.203 -0.976 1.256 3.711 -0.471 C18 L7U 10 L7U C19 C11 C 0 1 Y N N -24.273 20.361 1.133 5.740 1.267 0.928 C19 L7U 11 L7U C2 C12 C 0 1 Y N N -28.472 18.769 -0.642 8.331 -2.451 -0.612 C2 L7U 12 L7U C20 C13 C 0 1 Y N N -25.052 19.327 0.707 6.944 0.766 0.538 C20 L7U 13 L7U C21 C14 C 0 1 Y N N -26.370 19.557 0.249 7.045 -0.584 0.158 C21 L7U 14 L7U C22 C15 C 0 1 Y N N -27.200 18.503 -0.207 8.270 -1.135 -0.250 C22 L7U 15 L7U C3 C16 C 0 1 Y N N -28.969 20.091 -0.646 7.189 -3.257 -0.582 C3 L7U 16 L7U C4 C17 C 0 1 Y N N -28.183 21.116 -0.224 5.988 -2.753 -0.192 C4 L7U 17 L7U C5 C18 C 0 1 Y N N -26.863 20.888 0.231 5.888 -1.403 0.188 C5 L7U 18 L7U C6 C19 C 0 1 Y N N -26.020 21.934 0.676 4.663 -0.849 0.596 C6 L7U 19 L7U C7 C20 C 0 1 Y N N -24.741 21.697 1.107 4.604 0.461 0.962 C7 L7U 20 L7U C8 C21 C 0 1 N N R -23.846 22.828 1.591 3.288 1.050 1.400 C8 L7U 21 L7U C9 C22 C 0 1 N N N -23.563 22.691 3.090 3.413 1.569 2.834 C9 L7U 22 L7U N1 N1 N 0 1 N N N -22.539 23.781 -0.254 1.666 2.685 0.498 N1 L7U 23 L7U N2 N2 N 0 1 N N N -22.850 25.215 -5.377 -3.420 2.083 -0.147 N2 L7U 24 L7U O1 O1 O 0 1 N N N -29.353 17.822 -1.092 9.517 -2.984 -1.007 O1 L7U 25 L7U O2 O2 O 0 1 N N N -21.564 22.270 1.114 3.749 2.659 -0.265 O2 L7U 26 L7U O3 O3 O 0 1 N N N -22.993 23.030 -4.878 -2.371 2.411 -2.074 O3 L7U 27 L7U S1 S1 S 0 1 N N N -20.183 24.589 -6.649 -7.226 0.777 -0.647 S1 L7U 28 L7U H3 H1 H 0 1 N N N -29.649 15.882 -1.751 8.835 -4.519 -2.209 H3 L7U 29 L7U H2 H2 H 0 1 N N N -28.077 16.626 -2.198 10.525 -4.662 -1.668 H2 L7U 30 L7U H1 H3 H 0 1 N N N -28.371 16.096 -0.507 9.195 -4.967 -0.524 H1 L7U 31 L7U H11 H4 H 0 1 N N N -23.647 25.521 -0.668 0.428 3.022 2.164 H11 L7U 32 L7U H12 H5 H 0 1 N N N -24.617 24.098 -0.158 1.104 1.379 2.047 H12 L7U 33 L7U H13 H6 H 0 1 N N N -24.909 24.532 -2.555 -0.336 0.879 0.127 H13 L7U 34 L7U H14 H7 H 0 1 N N N -24.056 22.973 -2.294 -1.347 1.484 1.462 H14 L7U 35 L7U H15 H8 H 0 1 N N N -22.762 25.666 -2.949 -1.294 3.759 0.455 H15 L7U 36 L7U H18 H9 H 0 1 N N N -22.749 26.184 -7.230 -4.428 0.779 -1.444 H18 L7U 37 L7U H17 H10 H 0 1 N N N -23.866 24.780 -7.154 -5.002 2.464 -1.470 H17 L7U 38 L7U H20 H11 H 0 1 N N N -22.079 23.225 -7.209 -5.353 0.499 0.840 H20 L7U 39 L7U H19 H12 H 0 1 N N N -21.730 24.445 -8.480 -5.927 2.183 0.813 H19 L7U 40 L7U H22 H13 H 0 1 N N N -21.469 22.915 -2.677 0.225 2.348 -1.786 H22 L7U 41 L7U H23 H14 H 0 1 N N N -20.650 24.484 -2.981 -0.377 4.023 -1.844 H23 L7U 42 L7U H24 H15 H 0 1 N N N -20.479 23.614 -0.619 2.054 3.866 -1.197 H24 L7U 43 L7U H25 H16 H 0 1 N N N -21.156 25.270 -0.779 1.047 4.644 0.051 H25 L7U 44 L7U H26 H17 H 0 1 N N N -23.277 20.157 1.498 5.665 2.304 1.219 H26 L7U 45 L7U H27 H18 H 0 1 N N N -24.659 18.321 0.719 7.816 1.402 0.520 H27 L7U 46 L7U H28 H19 H 0 1 N N N -26.830 17.489 -0.212 9.159 -0.523 -0.277 H28 L7U 47 L7U H4 H20 H 0 1 N N N -29.975 20.288 -0.985 7.261 -4.294 -0.874 H4 L7U 48 L7U H5 H21 H 0 1 N N N -28.573 22.123 -0.236 5.113 -3.387 -0.174 H5 L7U 49 L7U H6 H22 H 0 1 N N N -26.395 22.947 0.676 3.773 -1.461 0.624 H6 L7U 50 L7U H7 H23 H 0 1 N N N -24.395 23.770 1.445 2.514 0.284 1.357 H7 L7U 51 L7U H9 H24 H 0 1 N N N -24.514 22.623 3.639 4.099 2.415 2.855 H9 L7U 52 L7U H8 H25 H 0 1 N N N -22.971 21.782 3.270 2.434 1.885 3.193 H8 L7U 53 L7U H10 H26 H 0 1 N N N -23.000 23.570 3.439 3.796 0.775 3.475 H10 L7U 54 L7U H16 H27 H 0 1 N N N -22.773 26.128 -4.977 -3.392 2.108 0.823 H16 L7U 55 L7U S2 S2 S 0 1 N Y N ? ? ? -6.698 -1.039 -1.439 S2 L7U 56 L7U C24 C24 C 0 1 N Y N ? ? ? -6.998 -2.185 -0.067 C24 L7U 57 L7U C25 C25 C 0 1 N Y N ? ? ? -8.505 -2.313 0.171 C25 L7U 58 L7U N3 N3 N 0 1 N Y N ? ? ? -8.748 -3.242 1.283 N3 L7U 59 L7U C27 C27 C 0 1 N Y N ? ? ? -10.157 -3.211 1.696 C27 L7U 60 L7U C28 C28 C 0 1 N Y N ? ? ? -8.333 -4.606 0.930 C28 L7U 61 L7U H21 H28 H 0 1 N Y N ? ? ? -6.585 -3.164 -0.313 H21 L7U 62 L7U H29 H29 H 0 1 N Y N ? ? ? -6.519 -1.806 0.836 H29 L7U 63 L7U H30 H30 H 0 1 N Y N ? ? ? -8.918 -1.335 0.418 H30 L7U 64 L7U H31 H31 H 0 1 N Y N ? ? ? -8.984 -2.693 -0.731 H31 L7U 65 L7U H32 H32 H 0 1 N Y N ? ? ? -10.788 -3.499 0.856 H32 L7U 66 L7U H33 H33 H 0 1 N Y N ? ? ? -10.309 -3.908 2.521 H33 L7U 67 L7U H34 H34 H 0 1 N Y N ? ? ? -10.419 -2.203 2.019 H34 L7U 68 L7U H35 H35 H 0 1 N Y N ? ? ? -7.268 -4.613 0.695 H35 L7U 69 L7U H36 H36 H 0 1 N Y N ? ? ? -8.524 -5.273 1.771 H36 L7U 70 L7U H37 H37 H 0 1 N Y N ? ? ? -8.898 -4.945 0.062 H37 L7U 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L7U C16 C15 SING N N 1 L7U C16 S1 SING N N 2 L7U C15 N2 SING N N 3 L7U N2 C14 SING N N 4 L7U O3 C14 DOUB N N 5 L7U C14 C13 SING N N 6 L7U C13 C17 SING N N 7 L7U C13 C12 SING N N 8 L7U C17 C18 SING N N 9 L7U C12 C11 SING N N 10 L7U C1 O1 SING N N 11 L7U O1 C2 SING N N 12 L7U C18 N1 SING N N 13 L7U C11 N1 SING N N 14 L7U C3 C2 DOUB Y N 15 L7U C3 C4 SING Y N 16 L7U C2 C22 SING Y N 17 L7U N1 C10 SING N N 18 L7U C4 C5 DOUB Y N 19 L7U C22 C21 DOUB Y N 20 L7U C5 C21 SING Y N 21 L7U C5 C6 SING Y N 22 L7U C21 C20 SING Y N 23 L7U C6 C7 DOUB Y N 24 L7U C20 C19 DOUB Y N 25 L7U C10 O2 DOUB N N 26 L7U C10 C8 SING N N 27 L7U C7 C19 SING Y N 28 L7U C7 C8 SING N N 29 L7U C8 C9 SING N N 30 L7U C1 H3 SING N N 31 L7U C1 H2 SING N N 32 L7U C1 H1 SING N N 33 L7U C11 H11 SING N N 34 L7U C11 H12 SING N N 35 L7U C12 H13 SING N N 36 L7U C12 H14 SING N N 37 L7U C13 H15 SING N N 38 L7U C15 H18 SING N N 39 L7U C15 H17 SING N N 40 L7U C16 H20 SING N N 41 L7U C16 H19 SING N N 42 L7U C17 H22 SING N N 43 L7U C17 H23 SING N N 44 L7U C18 H24 SING N N 45 L7U C18 H25 SING N N 46 L7U C19 H26 SING N N 47 L7U C20 H27 SING N N 48 L7U C22 H28 SING N N 49 L7U C3 H4 SING N N 50 L7U C4 H5 SING N N 51 L7U C6 H6 SING N N 52 L7U C8 H7 SING N N 53 L7U C9 H9 SING N N 54 L7U C9 H8 SING N N 55 L7U C9 H10 SING N N 56 L7U N2 H16 SING N N 57 L7U S1 S2 SING N N 58 L7U S2 C24 SING N N 59 L7U C24 C25 SING N N 60 L7U C25 N3 SING N N 61 L7U N3 C27 SING N N 62 L7U N3 C28 SING N N 63 L7U C24 H21 SING N N 64 L7U C24 H29 SING N N 65 L7U C25 H30 SING N N 66 L7U C25 H31 SING N N 67 L7U C27 H32 SING N N 68 L7U C27 H33 SING N N 69 L7U C27 H34 SING N N 70 L7U C28 H35 SING N N 71 L7U C28 H36 SING N N 72 L7U C28 H37 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L7U InChI InChI 1.06 "InChI=1S/C26H37N3O3S2/c1-19(21-5-6-23-18-24(32-4)8-7-22(23)17-21)26(31)29-12-9-20(10-13-29)25(30)27-11-15-33-34-16-14-28(2)3/h5-8,17-20H,9-16H2,1-4H3,(H,27,30)/t19-/m1/s1" L7U InChIKey InChI 1.06 DZVLAKKQKOIIMO-LJQANCHMSA-N L7U SMILES_CANONICAL CACTVS 3.385 "COc1ccc2cc(ccc2c1)[C@@H](C)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C" L7U SMILES CACTVS 3.385 "COc1ccc2cc(ccc2c1)[CH](C)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C" L7U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](c1ccc2cc(ccc2c1)OC)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C" L7U SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(c1ccc2cc(ccc2c1)OC)C(=O)N3CCC(CC3)C(=O)NCCSSCCN(C)C" # _pdbx_chem_comp_identifier.comp_id L7U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-[2-[2-(dimethylamino)ethyldisulfanyl]ethyl]-1-[(2~{R})-2-(6-methoxynaphthalen-2-yl)propanoyl]piperidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L7U "Create component" 2022-06-20 PDBE L7U "Modify descriptor" 2022-08-22 RCSB L7U "Initial release" 2023-04-26 RCSB #