data_L82 # _chem_comp.id L82 _chem_comp.name "(2~{S})-2-[bis(pyridin-2-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 N6 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-20 _chem_comp.pdbx_modified_date 2022-12-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L82 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A76 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L82 C4 C1 C 0 1 N N N -28.975 -34.240 12.975 -1.169 -0.051 -0.103 C4 L82 1 L82 C14 C2 C 0 1 N N N -33.134 -35.712 10.943 2.040 0.101 -0.892 C14 L82 2 L82 C5 C3 C 0 1 N N N -27.471 -34.527 13.024 -2.289 -0.196 -1.136 C5 L82 3 L82 C6 C4 C 0 1 N N N -26.156 -33.308 14.813 -4.426 0.840 -0.251 C6 L82 4 L82 C11 C5 C 0 1 Y N N -27.660 -35.713 17.266 -6.773 -1.651 1.298 C11 L82 5 L82 C7 C6 C 0 1 Y N N -26.350 -34.242 15.988 -4.933 -0.342 0.482 C7 L82 6 L82 C8 C7 C 0 1 Y N N -25.266 -34.439 16.854 -4.040 -1.253 1.045 C8 L82 7 L82 C9 C8 C 0 1 Y N N -25.386 -35.293 17.966 -4.519 -2.349 1.732 C9 L82 8 L82 C10 C9 C 0 1 Y N N -26.589 -35.923 18.158 -5.883 -2.551 1.854 C10 L82 9 L82 C12 C10 C 0 1 Y N N -27.568 -34.872 16.161 -6.307 -0.548 0.613 C12 L82 10 L82 C13 C11 C 0 1 N N N -26.192 -32.381 12.855 -3.136 2.134 -1.497 C13 L82 11 L82 N1 N1 N 0 1 N N N -26.671 -33.422 13.564 -3.249 0.898 -0.972 N1 L82 12 L82 N2 N2 N 0 1 N N N -25.426 -32.210 14.905 -5.018 1.998 -0.330 N2 L82 13 L82 C3 C12 C 0 1 N N N -29.589 -35.186 11.934 -0.240 -1.264 -0.184 C3 L82 14 L82 N3 N3 N 0 1 N N N -25.459 -31.651 13.665 -4.217 2.842 -1.112 N3 L82 15 L82 C1 C13 C 0 1 N N N -31.334 -33.512 11.676 1.756 -2.344 0.815 C1 L82 16 L82 C15 C14 C 0 1 Y N N -34.037 -34.807 10.114 3.018 -1.006 -1.192 C15 L82 17 L82 C16 C15 C 0 1 Y N N -33.782 -34.608 8.750 2.557 -2.205 -1.703 C16 L82 18 L82 C17 C16 C 0 1 Y N N -34.637 -33.810 8.002 3.466 -3.215 -1.980 C17 L82 19 L82 C18 C17 C 0 1 Y N N -35.709 -33.220 8.668 4.810 -2.980 -1.732 C18 L82 20 L82 C19 C18 C 0 1 Y N N -35.911 -33.449 10.034 5.196 -1.756 -1.220 C19 L82 21 L82 C2 C19 C 0 1 N N S -31.104 -34.995 11.853 0.880 -1.118 0.849 C2 L82 22 L82 C20 C20 C 0 1 N N N -31.076 -36.678 10.039 2.888 0.129 1.376 C20 L82 23 L82 C21 C21 C 0 1 Y N N -31.941 -37.374 8.974 3.386 1.549 1.440 C21 L82 24 L82 C22 C22 C 0 1 Y N N -32.289 -36.673 7.824 3.013 2.356 2.498 C22 L82 25 L82 C23 C23 C 0 1 Y N N -33.075 -37.321 6.865 3.481 3.661 2.551 C23 L82 26 L82 C24 C24 C 0 1 Y N N -33.469 -38.640 7.097 4.311 4.105 1.533 C24 L82 27 L82 C25 C25 C 0 1 Y N N -33.067 -39.281 8.262 4.641 3.240 0.507 C25 L82 28 L82 N4 N4 N 0 1 N N N -31.717 -35.492 10.617 1.686 0.069 0.533 N4 L82 29 L82 N5 N5 N 0 1 Y N N -35.081 -34.229 10.714 4.304 -0.818 -0.968 N5 L82 30 L82 N6 N6 N 0 1 Y N N -32.325 -38.640 9.153 4.177 2.006 0.489 N6 L82 31 L82 O1 O1 O 0 1 N N N -32.222 -32.945 12.379 1.202 -3.566 0.839 O1 L82 32 L82 O2 O2 O 0 1 N N N -30.673 -32.893 10.791 2.958 -2.226 0.767 O2 L82 33 L82 S1 S1 S 0 1 N N N -26.549 -32.093 11.119 -1.849 2.703 -2.473 S1 L82 34 L82 H1 H1 H 0 1 N N N -29.149 -33.194 12.682 -0.601 0.857 -0.309 H1 L82 35 L82 H2 H2 H 0 1 N N N -29.425 -34.424 13.962 -1.601 0.010 0.896 H2 L82 36 L82 H3 H3 H 0 1 N N N -33.294 -35.498 12.010 2.495 1.062 -1.132 H3 L82 37 L82 H4 H4 H 0 1 N N N -33.391 -36.761 10.737 1.141 -0.036 -1.493 H4 L82 38 L82 H5 H5 H 0 1 N N N -27.308 -35.413 13.655 -1.864 -0.160 -2.139 H5 L82 39 L82 H6 H6 H 0 1 N N N -27.125 -34.737 12.001 -2.796 -1.150 -0.990 H6 L82 40 L82 H7 H7 H 0 1 N N N -28.592 -36.227 17.448 -7.837 -1.814 1.397 H7 L82 41 L82 H8 H8 H 0 1 N N N -24.331 -33.931 16.667 -2.976 -1.099 0.947 H8 L82 42 L82 H9 H9 H 0 1 N N N -24.560 -35.447 18.644 -3.829 -3.056 2.169 H9 L82 43 L82 H10 H10 H 0 1 N N N -26.717 -36.586 19.001 -6.253 -3.415 2.386 H10 L82 44 L82 H11 H11 H 0 1 N N N -28.395 -34.721 15.483 -7.003 0.154 0.179 H11 L82 45 L82 H12 H12 H 0 1 N N N -29.371 -36.226 12.219 -0.808 -2.171 0.022 H12 L82 46 L82 H13 H13 H 0 1 N N N -29.146 -34.975 10.950 0.193 -1.324 -1.183 H13 L82 47 L82 H14 H14 H 0 1 N N N -24.992 -30.805 13.407 -4.408 3.766 -1.339 H14 L82 48 L82 H15 H15 H 0 1 N N N -32.926 -35.073 8.284 1.503 -2.353 -1.884 H15 L82 49 L82 H16 H16 H 0 1 N N N -34.477 -33.653 6.945 3.135 -4.162 -2.380 H16 L82 50 L82 H17 H17 H 0 1 N N N -36.390 -32.581 8.126 5.545 -3.744 -1.936 H17 L82 51 L82 H18 H18 H 0 1 N N N -36.748 -32.988 10.537 6.241 -1.565 -1.023 H18 L82 52 L82 H19 H19 H 0 1 N N N -31.606 -35.379 12.753 0.446 -1.009 1.842 H19 L82 53 L82 H20 H20 H 0 1 N N N -30.873 -37.395 10.848 3.662 -0.509 0.950 H20 L82 54 L82 H21 H21 H 0 1 N N N -30.128 -36.371 9.574 2.644 -0.217 2.380 H21 L82 55 L82 H22 H22 H 0 1 N N N -31.961 -35.655 7.675 2.364 1.977 3.274 H22 L82 56 L82 H23 H23 H 0 1 N N N -33.372 -36.810 5.961 3.206 4.314 3.365 H23 L82 57 L82 H24 H24 H 0 1 N N N -34.082 -39.159 6.375 4.694 5.115 1.542 H24 L82 58 L82 H25 H25 H 0 1 N N N -33.360 -40.305 8.442 5.287 3.579 -0.290 H25 L82 59 L82 H27 H27 H 0 1 N N N -32.289 -32.031 12.129 1.805 -4.322 0.816 H27 L82 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L82 C23 C24 DOUB Y N 1 L82 C23 C22 SING Y N 2 L82 C24 C25 SING Y N 3 L82 C22 C21 DOUB Y N 4 L82 C17 C18 DOUB Y N 5 L82 C17 C16 SING Y N 6 L82 C25 N6 DOUB Y N 7 L82 C18 C19 SING Y N 8 L82 C16 C15 DOUB Y N 9 L82 C21 N6 SING Y N 10 L82 C21 C20 SING N N 11 L82 C19 N5 DOUB Y N 12 L82 C20 N4 SING N N 13 L82 C15 N5 SING Y N 14 L82 C15 C14 SING N N 15 L82 N4 C14 SING N N 16 L82 N4 C2 SING N N 17 L82 O2 C1 DOUB N N 18 L82 S1 C13 DOUB N N 19 L82 C1 C2 SING N N 20 L82 C1 O1 SING N N 21 L82 C2 C3 SING N N 22 L82 C3 C4 SING N N 23 L82 C13 N1 SING N N 24 L82 C13 N3 SING N N 25 L82 C4 C5 SING N N 26 L82 C5 N1 SING N N 27 L82 N1 C6 SING N N 28 L82 N3 N2 SING N N 29 L82 C6 N2 DOUB N N 30 L82 C6 C7 SING N N 31 L82 C7 C12 DOUB Y N 32 L82 C7 C8 SING Y N 33 L82 C12 C11 SING Y N 34 L82 C8 C9 DOUB Y N 35 L82 C11 C10 DOUB Y N 36 L82 C9 C10 SING Y N 37 L82 C4 H1 SING N N 38 L82 C4 H2 SING N N 39 L82 C14 H3 SING N N 40 L82 C14 H4 SING N N 41 L82 C5 H5 SING N N 42 L82 C5 H6 SING N N 43 L82 C11 H7 SING N N 44 L82 C8 H8 SING N N 45 L82 C9 H9 SING N N 46 L82 C10 H10 SING N N 47 L82 C12 H11 SING N N 48 L82 C3 H12 SING N N 49 L82 C3 H13 SING N N 50 L82 N3 H14 SING N N 51 L82 C16 H15 SING N N 52 L82 C17 H16 SING N N 53 L82 C18 H17 SING N N 54 L82 C19 H18 SING N N 55 L82 C2 H19 SING N N 56 L82 C20 H20 SING N N 57 L82 C20 H21 SING N N 58 L82 C22 H22 SING N N 59 L82 C23 H23 SING N N 60 L82 C24 H24 SING N N 61 L82 C25 H25 SING N N 62 L82 O1 H27 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L82 InChI InChI 1.06 "InChI=1S/C25H26N6O2S/c32-24(33)22(13-8-16-31-23(28-29-25(31)34)19-9-2-1-3-10-19)30(17-20-11-4-6-14-26-20)18-21-12-5-7-15-27-21/h1-7,9-12,14-15,22H,8,13,16-18H2,(H,29,34)(H,32,33)/t22-/m0/s1" L82 InChIKey InChI 1.06 DXFIRCHAKLZTEP-QFIPXVFZSA-N L82 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3ccccn3)Cc4ccccn4" L82 SMILES CACTVS 3.385 "OC(=O)[CH](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3ccccn3)Cc4ccccn4" L82 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCC[C@@H](C(=O)O)N(Cc3ccccn3)Cc4ccccn4" L82 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCCC(C(=O)O)N(Cc3ccccn3)Cc4ccccn4" # _pdbx_chem_comp_identifier.comp_id L82 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[bis(pyridin-2-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L82 "Create component" 2022-06-20 PDBE L82 "Modify descriptor" 2022-08-22 RCSB L82 "Initial release" 2022-12-14 RCSB #