data_L9E # _chem_comp.id L9E _chem_comp.name "N-(3-azanylpropyl)-3-[[(3S)-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-N-methyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-27 _chem_comp.pdbx_modified_date 2022-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code L9E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A7N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal L9E C1 C1 C 0 1 Y N N 8.514 -12.592 -5.459 5.391 1.176 0.819 C1 L9E 1 L9E C10 C2 C 0 1 Y N N 4.727 -7.083 -5.353 -0.488 -0.377 -0.618 C10 L9E 2 L9E C11 C3 C 0 1 Y N N 3.629 -6.217 -5.267 -0.294 -1.754 -0.616 C11 L9E 3 L9E C12 C4 C 0 1 Y N N 3.702 -4.953 -5.813 -1.282 -2.594 -0.138 C12 L9E 4 L9E C13 C5 C 0 1 Y N N 4.851 -4.538 -6.464 -2.467 -2.072 0.341 C13 L9E 5 L9E C14 C6 C 0 1 Y N N 5.942 -5.395 -6.578 -2.671 -0.692 0.343 C14 L9E 6 L9E C15 C7 C 0 1 N N N 7.196 -4.974 -7.296 -3.939 -0.130 0.856 C15 L9E 7 L9E C16 C8 C 0 1 N N N 7.861 -2.830 -8.167 -5.109 -2.036 -0.111 C16 L9E 8 L9E C17 C9 C 0 1 N N N 8.278 -3.325 -5.752 -6.371 -0.139 1.008 C17 L9E 9 L9E C18 C10 C 0 1 N N N 7.253 -2.985 -4.685 -6.892 0.764 -0.112 C18 L9E 10 L9E C19 C11 C 0 1 N N N 6.384 -1.802 -5.013 -8.213 1.403 0.323 C19 L9E 11 L9E C2 C12 C 0 1 Y N N 9.029 -13.810 -5.834 6.509 1.133 1.632 C2 L9E 12 L9E C20 C13 C 0 1 Y N N 5.874 -6.664 -6.022 -1.672 0.157 -0.134 C20 L9E 13 L9E C21 C14 C 0 1 N N N 6.425 -10.133 -5.188 2.750 -0.301 -0.478 C21 L9E 14 L9E C3 C15 C 0 1 Y N N 8.292 -14.941 -5.561 7.334 0.024 1.618 C3 L9E 15 L9E C4 C16 C 0 1 Y N N 7.080 -14.853 -4.916 7.045 -1.046 0.791 C4 L9E 16 L9E C5 C17 C 0 1 Y N N 6.570 -13.626 -4.535 5.931 -1.010 -0.025 C5 L9E 17 L9E C6 C18 C 0 1 Y N N 7.278 -12.470 -4.834 5.099 0.101 -0.014 C6 L9E 18 L9E C7 C19 C 0 1 N N N 6.417 -10.977 -2.993 3.960 0.666 -2.209 C7 L9E 19 L9E C8 C20 C 0 1 N N N 5.378 -9.880 -3.057 2.473 0.909 -2.549 C8 L9E 20 L9E C9 C21 C 0 1 N N S 5.815 -9.075 -4.271 1.767 -0.097 -1.609 C9 L9E 21 L9E F1 F1 F 0 1 N N N 9.237 -11.481 -5.737 4.582 2.258 0.837 F1 L9E 22 L9E N1 N1 N 0 1 N N N 6.735 -11.214 -4.408 3.968 0.140 -0.839 N1 L9E 23 L9E N2 N2 N 0 1 N N N 4.672 -8.361 -4.824 0.513 0.468 -1.103 N2 L9E 24 L9E N3 N3 N 0 1 N N N 7.724 -3.757 -7.047 -5.106 -0.750 0.592 N3 L9E 25 L9E N4 N4 N 0 1 N N N 5.307 -1.645 -4.031 -8.714 2.270 -0.752 N4 L9E 26 L9E O1 O1 O 0 1 N N N 7.648 -5.701 -8.184 -3.929 0.891 1.515 O1 L9E 27 L9E O2 O2 O 0 1 N N N 6.631 -10.021 -6.385 2.479 -0.786 0.600 O2 L9E 28 L9E H1 H1 H 0 1 N N N 2.725 -6.540 -4.773 0.630 -2.168 -0.990 H1 L9E 29 L9E H2 H2 H 0 1 N N N 2.859 -4.283 -5.732 -1.126 -3.663 -0.139 H2 L9E 30 L9E H3 H3 H 0 1 N N N 4.901 -3.545 -6.885 -3.236 -2.732 0.714 H3 L9E 31 L9E H4 H4 H 0 1 N N N 8.303 -1.887 -7.812 -4.976 -2.844 0.609 H4 L9E 32 L9E H5 H5 H 0 1 N N N 8.513 -3.275 -8.933 -6.060 -2.164 -0.628 H5 L9E 33 L9E H6 H6 H 0 1 N N N 6.870 -2.630 -8.600 -4.295 -2.056 -0.835 H6 L9E 34 L9E H7 H7 H 0 1 N N N 8.912 -4.137 -5.367 -6.209 0.454 1.908 H7 L9E 35 L9E H8 H8 H 0 1 N N N 8.894 -2.431 -5.928 -7.102 -0.921 1.214 H8 L9E 36 L9E H9 H9 H 0 1 N N N 6.603 -3.860 -4.541 -6.162 1.546 -0.318 H9 L9E 37 L9E H10 H10 H 0 1 N N N 7.789 -2.769 -3.749 -7.054 0.171 -1.012 H10 L9E 38 L9E H11 H11 H 0 1 N N N 7.003 -0.892 -5.015 -8.944 0.621 0.529 H11 L9E 39 L9E H12 H12 H 0 1 N N N 5.942 -1.947 -6.010 -8.052 1.996 1.223 H12 L9E 40 L9E H13 H13 H 0 1 N N N 9.986 -13.878 -6.330 6.738 1.967 2.279 H13 L9E 41 L9E H14 H14 H 0 1 N N N 6.718 -7.333 -6.109 -1.824 1.226 -0.135 H14 L9E 42 L9E H15 H15 H 0 1 N N N 8.670 -15.908 -5.857 8.207 -0.007 2.254 H15 L9E 43 L9E H16 H16 H 0 1 N N N 6.521 -15.753 -4.705 7.692 -1.911 0.782 H16 L9E 44 L9E H17 H17 H 0 1 N N N 5.629 -13.567 -4.009 5.707 -1.846 -0.671 H17 L9E 45 L9E H18 H18 H 0 1 N N N 6.007 -11.883 -2.523 4.390 -0.063 -2.895 H18 L9E 46 L9E H19 H19 H 0 1 N N N 7.307 -10.647 -2.438 4.516 1.603 -2.258 H19 L9E 47 L9E H20 H20 H 0 1 N N N 5.395 -9.264 -2.146 2.181 1.932 -2.315 H20 L9E 48 L9E H21 H21 H 0 1 N N N 4.370 -10.296 -3.199 2.269 0.676 -3.594 H21 L9E 49 L9E H22 H22 H 0 1 N N N 6.598 -8.362 -3.971 1.581 -1.037 -2.127 H22 L9E 50 L9E H23 H23 H 0 1 N N N 3.999 -8.317 -4.085 0.379 1.428 -1.105 H23 L9E 51 L9E H24 H24 H 0 1 N N N 4.747 -0.853 -4.274 -8.811 1.757 -1.615 H24 L9E 52 L9E H25 H25 H 0 1 N N N 4.738 -2.467 -4.027 -9.587 2.704 -0.489 H25 L9E 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal L9E O1 C15 DOUB N N 1 L9E C16 N3 SING N N 2 L9E C15 N3 SING N N 3 L9E C15 C14 SING N N 4 L9E N3 C17 SING N N 5 L9E C14 C13 DOUB Y N 6 L9E C14 C20 SING Y N 7 L9E C13 C12 SING Y N 8 L9E O2 C21 DOUB N N 9 L9E C20 C10 DOUB Y N 10 L9E C2 C3 DOUB Y N 11 L9E C2 C1 SING Y N 12 L9E C12 C11 DOUB Y N 13 L9E C17 C18 SING N N 14 L9E F1 C1 SING N N 15 L9E C3 C4 SING Y N 16 L9E C1 C6 DOUB Y N 17 L9E C10 C11 SING Y N 18 L9E C10 N2 SING N N 19 L9E C21 N1 SING N N 20 L9E C21 C9 SING N N 21 L9E C19 C18 SING N N 22 L9E C19 N4 SING N N 23 L9E C4 C5 DOUB Y N 24 L9E C6 C5 SING Y N 25 L9E C6 N1 SING N N 26 L9E N2 C9 SING N N 27 L9E N1 C7 SING N N 28 L9E C9 C8 SING N N 29 L9E C8 C7 SING N N 30 L9E C11 H1 SING N N 31 L9E C12 H2 SING N N 32 L9E C13 H3 SING N N 33 L9E C16 H4 SING N N 34 L9E C16 H5 SING N N 35 L9E C16 H6 SING N N 36 L9E C17 H7 SING N N 37 L9E C17 H8 SING N N 38 L9E C18 H9 SING N N 39 L9E C18 H10 SING N N 40 L9E C19 H11 SING N N 41 L9E C19 H12 SING N N 42 L9E C2 H13 SING N N 43 L9E C20 H14 SING N N 44 L9E C3 H15 SING N N 45 L9E C4 H16 SING N N 46 L9E C5 H17 SING N N 47 L9E C7 H18 SING N N 48 L9E C7 H19 SING N N 49 L9E C8 H20 SING N N 50 L9E C8 H21 SING N N 51 L9E C9 H22 SING N N 52 L9E N2 H23 SING N N 53 L9E N4 H24 SING N N 54 L9E N4 H25 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor L9E InChI InChI 1.06 "InChI=1S/C21H25FN4O2/c1-25(12-5-11-23)20(27)15-6-4-7-16(14-15)24-18-10-13-26(21(18)28)19-9-3-2-8-17(19)22/h2-4,6-9,14,18,24H,5,10-13,23H2,1H3/t18-/m0/s1" L9E InChIKey InChI 1.06 FKBZAUSZYONVAZ-SFHVURJKSA-N L9E SMILES_CANONICAL CACTVS 3.385 "CN(CCCN)C(=O)c1cccc(N[C@H]2CCN(C2=O)c3ccccc3F)c1" L9E SMILES CACTVS 3.385 "CN(CCCN)C(=O)c1cccc(N[CH]2CCN(C2=O)c3ccccc3F)c1" L9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CCCN)C(=O)c1cccc(c1)N[C@H]2CCN(C2=O)c3ccccc3F" L9E SMILES "OpenEye OEToolkits" 2.0.7 "CN(CCCN)C(=O)c1cccc(c1)NC2CCN(C2=O)c3ccccc3F" # _pdbx_chem_comp_identifier.comp_id L9E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(3-azanylpropyl)-3-[[(3~{S})-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-~{N}-methyl-benzamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id L9E _pdbx_chem_comp_synonyms.name "(S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site L9E "Create component" 2022-06-27 PDBE L9E "Modify descriptor" 2022-08-22 RCSB L9E "Initial release" 2022-10-05 RCSB #