data_LAM # _chem_comp.id LAM _chem_comp.name "4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N O17 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4'-NITROPHENYL-3I-THIOLAMINARITRIOSIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-06-04 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 641.596 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LAM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LAM C1 C1 C 0 1 N N S 35.821 25.646 26.370 -3.350 -1.423 0.607 C1 LAM 1 LAM C2 C2 C 0 1 N N R 36.898 24.874 25.408 -3.858 -2.719 1.243 C2 LAM 2 LAM O2 O2 O 0 1 N N N 37.991 25.846 25.057 -3.039 -3.053 2.366 O2 LAM 3 LAM C3 C3 C 0 1 N N S 36.212 24.275 24.064 -3.793 -3.847 0.209 C3 LAM 4 LAM O3 O3 O 0 1 N N N 37.143 23.355 23.383 -4.333 -5.044 0.771 O3 LAM 5 LAM C4 C4 C 0 1 N N S 34.857 23.470 24.426 -4.611 -3.443 -1.022 C4 LAM 6 LAM O4 O4 O 0 1 N N N 34.362 22.942 23.249 -4.498 -4.456 -2.023 O4 LAM 7 LAM C5 C5 C 0 1 N N R 33.842 24.579 25.119 -4.074 -2.119 -1.571 C5 LAM 8 LAM O5 O5 O 0 1 N N N 34.522 24.978 26.430 -4.135 -1.122 -0.549 O5 LAM 9 LAM C6 C6 C 0 1 N N N 32.347 24.224 25.494 -4.925 -1.679 -2.764 C6 LAM 10 LAM O6 O6 O 0 1 N N N 32.268 23.660 26.871 -4.355 -0.506 -3.348 O6 LAM 11 LAM C1A C1A C 0 1 N N S 35.790 28.360 30.952 -0.561 2.237 0.061 C1A LAM 12 LAM C2A C2A C 0 1 N N S 36.493 27.402 29.749 -1.225 1.027 0.722 C2A LAM 13 LAM C3A C3A C 0 1 N N S 35.377 26.357 29.067 -2.712 1.324 0.937 C3A LAM 14 LAM C4A C4A C 0 1 N N R 34.610 25.439 30.180 -2.851 2.596 1.780 C4A LAM 15 LAM C5A C5A C 0 1 N N R 33.991 26.423 31.455 -2.124 3.746 1.078 C5A LAM 16 LAM C6A C6A C 0 1 N N N 33.516 25.567 32.737 -2.206 5.005 1.943 C6A LAM 17 LAM O1A O1A O 0 1 N N N 36.778 29.368 31.560 0.838 1.989 -0.091 O1A LAM 18 LAM O2A O2A O 0 1 N N N 37.205 28.224 28.640 -1.084 -0.116 -0.124 O2A LAM 19 LAM O4A O4A O 0 1 N N N 33.573 24.525 29.434 -4.234 2.924 1.926 O4A LAM 20 LAM S3A S3A S 0 1 N N N 36.331 25.200 28.048 -3.491 -0.066 1.803 S3A LAM 21 LAM O5A O5A O 0 1 N N N 35.013 27.495 32.026 -0.753 3.391 0.882 O5A LAM 22 LAM O6A O6A O 0 1 N N N 32.311 24.832 32.387 -1.630 6.106 1.238 O6A LAM 23 LAM C1B C1B C 0 1 N N N ? ? ? 3.726 1.913 -0.398 C1B LAM 24 LAM C2B C2B C 0 1 N N N ? ? ? 2.912 3.208 -0.343 C2B LAM 25 LAM C3B C3B C 0 1 N N N ? ? ? 1.513 2.947 -0.909 C3B LAM 26 LAM C4B C4B C 0 1 N N N ? ? ? 1.644 2.402 -2.335 C4B LAM 27 LAM C5B C5B C 0 1 N N N ? ? ? 2.507 1.138 -2.312 C5B LAM 28 LAM C6B C6B C 0 1 N N N ? ? ? 2.692 0.621 -3.740 C6B LAM 29 LAM O1B O1B O 0 1 N N N ? ? ? 3.104 0.924 0.425 O1B LAM 30 LAM O2B O2B O 0 1 N N N ? ? ? 2.805 3.648 1.012 O2B LAM 31 LAM O4B O4B O 0 1 N N N ? ? ? 0.347 2.086 -2.846 O4B LAM 32 LAM O5B O5B O 0 1 N N N ? ? ? 3.783 1.444 -1.746 O5B LAM 33 LAM O6B O6B O 0 1 N N N ? ? ? 3.398 -0.621 -3.709 O6B LAM 34 LAM "C1'" "C1'" C 0 1 Y N N ? ? ? 3.806 -0.217 0.657 "C1'" LAM 35 LAM "C2'" "C2'" C 0 1 Y N N ? ? ? 3.262 -1.219 1.447 "C2'" LAM 36 LAM "C3'" "C3'" C 0 1 Y N N ? ? ? 3.977 -2.377 1.681 "C3'" LAM 37 LAM "C4'" "C4'" C 0 1 Y N N ? ? ? 5.234 -2.539 1.128 "C4'" LAM 38 LAM "C5'" "C5'" C 0 1 Y N N ? ? ? 5.778 -1.541 0.340 "C5'" LAM 39 LAM "C6'" "C6'" C 0 1 Y N N ? ? ? 5.065 -0.383 0.099 "C6'" LAM 40 LAM "N4'" "N4'" N 1 1 N N N ? ? ? 5.998 -3.781 1.380 "N4'" LAM 41 LAM "O'5" "O4'1" O 0 1 N N N ? ? ? 5.519 -4.660 2.074 "O'5" LAM 42 LAM "O'6" "O4'2" O -1 1 N N N ? ? ? 7.105 -3.924 0.894 "O'6" LAM 43 LAM H11 H11 H 0 1 N N N 35.776 26.692 26.031 -2.307 -1.545 0.317 H11 LAM 44 LAM H21 H21 H 0 1 N N N 37.306 24.011 25.954 -4.889 -2.584 1.572 H21 LAM 45 LAM HO21 HO21 H 0 0 N N N 38.629 25.418 24.498 -3.029 -2.380 3.060 HO21 LAM 46 LAM H31 H31 H 0 1 N N N 35.970 25.119 23.402 -2.756 -4.016 -0.081 H31 LAM 47 LAM HO31 HO31 H 0 0 N N N 36.732 23.011 22.599 -3.867 -5.354 1.559 HO31 LAM 48 LAM H41 H41 H 0 1 N N N 34.999 22.633 25.126 -5.658 -3.325 -0.740 H41 LAM 49 LAM HO41 HO41 H 0 0 N N N 33.563 22.461 23.429 -4.816 -5.325 -1.742 HO41 LAM 50 LAM H51 H51 H 0 1 N N N 33.709 25.326 24.323 -3.040 -2.250 -1.890 H51 LAM 51 LAM H61 H61 H 0 1 N N N 31.738 25.139 25.445 -4.951 -2.477 -3.505 H61 LAM 52 LAM H62 H62 H 0 1 N N N 31.964 23.481 24.779 -5.938 -1.462 -2.427 H62 LAM 53 LAM HO61 HO61 H 0 0 N N N 31.364 23.453 27.078 -4.844 -0.170 -4.112 HO61 LAM 54 LAM H1A1 H1A1 H 0 0 N N N 35.023 28.978 30.462 -1.008 2.408 -0.918 H1A1 LAM 55 LAM H2A1 H2A1 H 0 0 N N N 37.270 26.815 30.260 -0.751 0.830 1.684 H2A1 LAM 56 LAM H3A1 H3A1 H 0 0 N N N 34.629 26.952 28.523 -3.198 1.472 -0.028 H3A1 LAM 57 LAM H4A1 H4A1 H 0 0 N N N 35.295 24.753 30.700 -2.409 2.431 2.763 H4A1 LAM 58 LAM H5A1 H5A1 H 0 0 N N N 33.149 26.929 30.961 -2.592 3.937 0.112 H5A1 LAM 59 LAM H6A1 H6A1 H 0 0 N N N 34.309 24.863 33.028 -3.250 5.224 2.168 H6A1 LAM 60 LAM H6A2 H6A2 H 0 0 N N N 33.307 26.244 33.578 -1.661 4.843 2.873 H6A2 LAM 61 LAM HA21 HA21 H 0 0 N N N 37.578 27.633 27.997 -0.166 -0.360 -0.306 HA21 LAM 62 LAM HA41 HA41 H 0 0 N N N 33.116 23.983 30.066 -4.396 3.720 2.450 HA41 LAM 63 LAM HA61 HA61 H 0 0 N N N 32.021 24.323 33.135 -1.648 6.940 1.728 HA61 LAM 64 LAM H1B1 H1B1 H 0 0 N N N ? ? ? 4.737 2.103 -0.036 H1B1 LAM 65 LAM H2B1 H2B1 H 0 0 N N N ? ? ? 3.408 3.975 -0.938 H2B1 LAM 66 LAM H3B1 H3B1 H 0 0 N N N ? ? ? 0.946 3.878 -0.924 H3B1 LAM 67 LAM H4B1 H4B1 H 0 0 N N N ? ? ? 2.114 3.152 -2.970 H4B1 LAM 68 LAM H5B1 H5B1 H 0 0 N N N ? ? ? 2.016 0.373 -1.709 H5B1 LAM 69 LAM H6B1 H6B1 H 0 0 N N N ? ? ? 1.716 0.472 -4.202 H6B1 LAM 70 LAM H6B2 H6B2 H 0 0 N N N ? ? ? 3.262 1.348 -4.319 H6B2 LAM 71 LAM HB21 HB21 H 0 0 N N N ? ? ? 3.656 3.828 1.435 HB21 LAM 72 LAM HB41 HB41 H 0 0 N N N ? ? ? 0.355 1.735 -3.747 HB41 LAM 73 LAM HB61 HB61 H 0 0 N N N ? ? ? 3.552 -1.008 -4.582 HB61 LAM 74 LAM "H2'1" "H2'1" H 0 0 N N N ? ? ? 2.280 -1.093 1.879 "H2'1" LAM 75 LAM "H3'1" "H3'1" H 0 0 N N N ? ? ? 3.554 -3.158 2.296 "H3'1" LAM 76 LAM "H5'1" "H5'1" H 0 0 N N N ? ? ? 6.760 -1.670 -0.090 "H5'1" LAM 77 LAM "H6'1" "H6'1" H 0 0 N N N ? ? ? 5.489 0.394 -0.520 "H6'1" LAM 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LAM C1 C2 SING N N 1 LAM C1 O5 SING N N 2 LAM C1 S3A SING N N 3 LAM C1 H11 SING N N 4 LAM C2 O2 SING N N 5 LAM C2 C3 SING N N 6 LAM C2 H21 SING N N 7 LAM O2 HO21 SING N N 8 LAM C3 O3 SING N N 9 LAM C3 C4 SING N N 10 LAM C3 H31 SING N N 11 LAM O3 HO31 SING N N 12 LAM C4 O4 SING N N 13 LAM C4 C5 SING N N 14 LAM C4 H41 SING N N 15 LAM O4 HO41 SING N N 16 LAM C5 O5 SING N N 17 LAM C5 C6 SING N N 18 LAM C5 H51 SING N N 19 LAM C6 O6 SING N N 20 LAM C6 H61 SING N N 21 LAM C6 H62 SING N N 22 LAM O6 HO61 SING N N 23 LAM C1A C2A SING N N 24 LAM C1A O1A SING N N 25 LAM C1A O5A SING N N 26 LAM C1A H1A1 SING N N 27 LAM C2A C3A SING N N 28 LAM C2A O2A SING N N 29 LAM C2A H2A1 SING N N 30 LAM C3A C4A SING N N 31 LAM C3A S3A SING N N 32 LAM C3A H3A1 SING N N 33 LAM C4A C5A SING N N 34 LAM C4A O4A SING N N 35 LAM C4A H4A1 SING N N 36 LAM C5A C6A SING N N 37 LAM C5A O5A SING N N 38 LAM C5A H5A1 SING N N 39 LAM C6A O6A SING N N 40 LAM C6A H6A1 SING N N 41 LAM C6A H6A2 SING N N 42 LAM O1A C3B SING N N 43 LAM O2A HA21 SING N N 44 LAM O4A HA41 SING N N 45 LAM O6A HA61 SING N N 46 LAM C1B C2B SING N N 47 LAM C1B O1B SING N N 48 LAM C1B O5B SING N N 49 LAM C1B H1B1 SING N N 50 LAM C2B C3B SING N N 51 LAM C2B O2B SING N N 52 LAM C2B H2B1 SING N N 53 LAM C3B C4B SING N N 54 LAM C3B H3B1 SING N N 55 LAM C4B C5B SING N N 56 LAM C4B O4B SING N N 57 LAM C4B H4B1 SING N N 58 LAM C5B C6B SING N N 59 LAM C5B O5B SING N N 60 LAM C5B H5B1 SING N N 61 LAM C6B O6B SING N N 62 LAM C6B H6B1 SING N N 63 LAM C6B H6B2 SING N N 64 LAM O1B "C1'" SING N N 65 LAM O2B HB21 SING N N 66 LAM O4B HB41 SING N N 67 LAM O6B HB61 SING N N 68 LAM "C1'" "C2'" DOUB Y N 69 LAM "C1'" "C6'" SING Y N 70 LAM "C2'" "C3'" SING Y N 71 LAM "C2'" "H2'1" SING N N 72 LAM "C3'" "C4'" DOUB Y N 73 LAM "C3'" "H3'1" SING N N 74 LAM "C4'" "C5'" SING Y N 75 LAM "C4'" "N4'" SING N N 76 LAM "C5'" "C6'" DOUB Y N 77 LAM "C5'" "H5'1" SING N N 78 LAM "C6'" "H6'1" SING N N 79 LAM "N4'" "O'5" DOUB N N 80 LAM "N4'" "O'6" SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LAM SMILES ACDLabs 11.02 "[O-][N+](=O)c4ccc(OC3OC(CO)C(O)C(OC2OC(CO)C(O)C(SC1OC(C(O)C(O)C1O)CO)C2O)C3O)cc4" LAM InChI InChI 1.03 "InChI=1S/C24H35NO17S/c26-5-10-13(29)16(32)17(33)24(41-10)43-21-15(31)12(7-28)40-23(19(21)35)42-20-14(30)11(6-27)39-22(18(20)34)38-9-3-1-8(2-4-9)25(36)37/h1-4,10-24,26-35H,5-7H2/t10-,11?,12-,13-,14?,15-,16+,17-,18?,19-,20?,21+,22?,23+,24+/m1/s1" LAM InChIKey InChI 1.03 VWNONHZCCMYIGR-VGNFVTAUSA-N LAM SMILES_CANONICAL CACTVS 3.385 "OCC1OC(Oc2ccc(cc2)[N+]([O-])=O)C(O)C(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](S[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O)C1O" LAM SMILES CACTVS 3.385 "OCC1OC(Oc2ccc(cc2)[N+]([O-])=O)C(O)C(O[CH]3O[CH](CO)[CH](O)[CH](S[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH]3O)C1O" LAM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O" LAM SMILES "OpenEye OEToolkits" 1.7.5 "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)OC3C(C(C(C(O3)CO)O)SC4C(C(C(C(O4)CO)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LAM "SYSTEMATIC NAME" ACDLabs 11.02 "4-nitrophenyl beta-D-glucopyranosyl-(1->3)-3-thio-beta-D-glucopyranosyl-(1->3)hexopyranoside" LAM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3R,4S,5S,6R)-2-[(2S,3S,4S,5R,6R)-2-[(2S,3S,4S,5S,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxan-4-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LAM "Create component" 2001-06-04 RCSB LAM "Modify descriptor" 2011-06-04 RCSB LAM "Modify descriptor" 2012-01-05 RCSB LAM "Modify coordinates" 2012-01-05 RCSB LAM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LAM _pdbx_chem_comp_synonyms.name "4'-NITROPHENYL-3I-THIOLAMINARITRIOSIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##