data_LAO # _chem_comp.id LAO _chem_comp.name 2-O-phosphono-alpha-L-arabinopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ARA _chem_comp.pdbx_synonyms "2-O-phosphono-alpha-L-arabinose; 2-O-phosphono-L-arabinose; 2-O-phosphono-arabinose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-27 _chem_comp.pdbx_modified_date 2023-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LAO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LAO 2-O-phosphono-alpha-L-arabinose PDB ? 2 LAO 2-O-phosphono-L-arabinose PDB ? 3 LAO 2-O-phosphono-arabinose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LAO OP2 OP2 O 0 1 N N N -15.745 -27.103 21.213 2.289 -1.518 0.723 OP2 LAO 1 LAO P P P 0 1 N N N -16.903 -26.819 20.189 2.245 -0.041 0.085 P LAO 2 LAO OP1 OP1 O 0 1 N N N -18.017 -27.836 20.324 2.300 0.966 1.168 OP1 LAO 3 LAO OP3 OP3 O 0 1 N Y N -17.421 -25.448 20.471 3.506 0.157 -0.896 OP3 LAO 4 LAO O2 O2 O 0 1 N N N -16.308 -26.833 18.699 0.881 0.142 -0.750 O2 LAO 5 LAO C2 C2 C 0 1 N N R -16.083 -28.011 17.876 -0.412 0.129 -0.141 C2 LAO 6 LAO C3 C3 C 0 1 N N S -14.658 -28.290 17.833 -1.246 -1.009 -0.737 C3 LAO 7 LAO O3 O3 O 0 1 N N N -14.145 -28.697 19.164 -0.634 -2.263 -0.429 O3 LAO 8 LAO C4 C4 C 0 1 N N S -14.207 -29.227 16.861 -2.654 -0.965 -0.134 C4 LAO 9 LAO O4 O4 O 0 1 N N N -14.591 -30.555 17.269 -2.577 -1.188 1.275 O4 LAO 10 LAO C5 C5 C 0 1 N N N -14.783 -29.008 15.477 -3.272 0.410 -0.401 C5 LAO 11 LAO O5 O5 O 0 1 N N N -16.167 -28.670 15.492 -2.431 1.425 0.152 O5 LAO 12 LAO C1 C1 C 0 1 N N R -16.600 -27.746 16.472 -1.116 1.462 -0.407 C1 LAO 13 LAO O1 O1 O 0 1 N Y N -17.976 -27.620 16.425 -0.373 2.524 0.196 O1 LAO 14 LAO H1A H1 H 0 1 N N N -15.961 -27.869 21.732 2.257 -2.230 0.070 H1A LAO 15 LAO H2A H2 H 0 1 N N N -18.347 -25.495 20.678 4.364 0.061 -0.460 H2A LAO 16 LAO H2 H3 H 0 1 N N N -16.621 -28.872 18.299 -0.307 -0.020 0.933 H2 LAO 17 LAO H3 H4 H 0 1 N N N -14.165 -27.335 17.600 -1.308 -0.889 -1.819 H3 LAO 18 LAO HO3 H5 H 0 1 N Y N -14.441 -28.078 19.821 -1.110 -3.029 -0.777 HO3 LAO 19 LAO H4 H6 H 0 1 N N N -13.111 -29.176 16.787 -3.271 -1.738 -0.592 H4 LAO 20 LAO HO4 H7 H 0 1 N Y N -14.247 -30.732 18.137 -3.434 -1.174 1.723 HO4 LAO 21 LAO H51 H8 H 0 1 N N N -14.655 -29.933 14.895 -3.367 0.563 -1.476 H51 LAO 22 LAO H52 H9 H 0 1 N N N -14.229 -28.190 14.993 -4.257 0.463 0.062 H52 LAO 23 LAO H1 H10 H 0 1 N N N -16.180 -26.770 16.187 -1.182 1.629 -1.482 H1 LAO 24 LAO HO1 H11 H 0 1 N Y N -18.260 -26.999 17.085 -0.762 3.399 0.067 HO1 LAO 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LAO C5 O5 SING N N 1 LAO C5 C4 SING N N 2 LAO O5 C1 SING N N 3 LAO O1 C1 SING N N 4 LAO C1 C2 SING N N 5 LAO C4 O4 SING N N 6 LAO C4 C3 SING N N 7 LAO C3 C2 SING N N 8 LAO C3 O3 SING N N 9 LAO C2 O2 SING N N 10 LAO O2 P SING N N 11 LAO P OP1 DOUB N N 12 LAO P OP3 SING N N 13 LAO P OP2 SING N N 14 LAO OP2 H1A SING N N 15 LAO OP3 H2A SING N N 16 LAO C2 H2 SING N N 17 LAO C3 H3 SING N N 18 LAO O3 HO3 SING N N 19 LAO C4 H4 SING N N 20 LAO O4 HO4 SING N N 21 LAO C5 H51 SING N N 22 LAO C5 H52 SING N N 23 LAO C1 H1 SING N N 24 LAO O1 HO1 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LAO SMILES ACDLabs 12.01 "O=P(OC1C(O)C(O)COC1O)(O)O" LAO InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-2-1-12-5(8)4(3(2)7)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4+,5+/m0/s1" LAO InChIKey InChI 1.03 QIAIUTJEZJIPSH-QMKXCQHVSA-N LAO SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CO[C@@H](O)[C@H](O[P](O)(O)=O)[C@H]1O" LAO SMILES CACTVS 3.385 "O[CH]1CO[CH](O)[CH](O[P](O)(O)=O)[CH]1O" LAO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O)O)O" LAO SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)O)OP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LAO "SYSTEMATIC NAME" ACDLabs 12.01 2-O-phosphono-alpha-L-arabinopyranose LAO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] dihydrogen phosphate" # _pdbx_chem_comp_related.comp_id LAO _pdbx_chem_comp_related.related_comp_id ARA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 LAO C1 ARA C1 "Carbohydrate core" 2 LAO C2 ARA C2 "Carbohydrate core" 3 LAO C3 ARA C3 "Carbohydrate core" 4 LAO C4 ARA C4 "Carbohydrate core" 5 LAO C5 ARA C5 "Carbohydrate core" 6 LAO O1 ARA O1 "Carbohydrate core" 7 LAO O2 ARA O2 "Carbohydrate core" 8 LAO O3 ARA O3 "Carbohydrate core" 9 LAO O4 ARA O4 "Carbohydrate core" 10 LAO O5 ARA O5 "Carbohydrate core" 11 LAO H1 ARA H1 "Carbohydrate core" 12 LAO HO1 ARA HO1 "Carbohydrate core" 13 LAO H2 ARA H2 "Carbohydrate core" 14 LAO H3 ARA H3 "Carbohydrate core" 15 LAO HO3 ARA HO3 "Carbohydrate core" 16 LAO H4 ARA H4 "Carbohydrate core" 17 LAO HO4 ARA HO4 "Carbohydrate core" 18 LAO H51 ARA H51 "Carbohydrate core" 19 LAO H52 ARA H52 "Carbohydrate core" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support LAO "CARBOHYDRATE ISOMER" L PDB ? LAO "CARBOHYDRATE RING" pyranose PDB ? LAO "CARBOHYDRATE ANOMER" alpha PDB ? LAO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LAO "Create component" 2014-02-27 PDBJ LAO "Initial release" 2015-08-19 RCSB LAO "Other modification" 2020-07-03 RCSB LAO "Modify parent residue" 2020-07-17 RCSB LAO "Modify synonyms" 2020-07-17 RCSB LAO "Modify linking type" 2020-07-17 RCSB LAO "Modify atom id" 2020-07-17 RCSB LAO "Modify component atom id" 2020-07-17 RCSB LAO "Modify leaving atom flag" 2020-07-17 RCSB LAO "Modify leaving atom flag" 2023-01-10 PDBE #