data_LAQ # _chem_comp.id LAQ _chem_comp.name "5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H26 N5 O8 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms LIPOYL-AMP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-12-27 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LAQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LAQ O2P O2P O 0 1 N N N 38.867 23.939 6.621 9.963 -3.783 0.672 O2P LAQ 1 LAQ P P P 0 1 N N R 39.210 25.298 6.068 8.378 -4.093 0.562 P LAQ 2 LAQ O1P O1P O 0 1 N N N 38.278 25.988 5.119 7.492 -2.889 0.706 O1P LAQ 3 LAQ O3P O3P O 0 1 N N N 39.428 26.206 7.379 8.264 -4.850 -0.864 O3P LAQ 4 LAQ C10 C10 C 0 1 N N N 39.750 27.618 7.372 7.118 -5.400 -1.352 C10 LAQ 5 LAQ C11 C11 C 0 1 N N N 39.510 28.357 8.674 7.392 -6.017 -2.702 C11 LAQ 6 LAQ C12 C12 C 0 1 N N N 40.170 29.729 8.698 6.134 -6.629 -3.315 C12 LAQ 7 LAQ C13 C13 C 0 1 N N N 40.306 30.224 10.129 6.434 -7.285 -4.663 C13 LAQ 8 LAQ C14 C14 C 0 1 N N N 40.947 31.604 10.167 5.169 -7.868 -5.291 C14 LAQ 9 LAQ C15 C15 C 0 1 N N R 41.167 32.098 11.597 5.457 -8.492 -6.648 C15 LAQ 10 LAQ S15 S15 S 0 1 N N N 42.318 31.145 12.535 3.939 -9.183 -7.375 S15 LAQ 11 LAQ S17 S17 S 0 1 N N N 42.472 32.556 13.977 4.419 -8.845 -9.339 S17 LAQ 12 LAQ C17 C17 C 0 1 N N N 42.222 33.977 12.967 6.038 -8.091 -9.045 C17 LAQ 13 LAQ C16 C16 C 0 1 N N N 41.753 33.514 11.582 5.988 -7.468 -7.654 C16 LAQ 14 LAQ O10 O10 O 0 1 N N N 40.200 28.148 6.357 6.040 -5.387 -0.777 O10 LAQ 15 LAQ "O5'" O5* O 0 1 N N N 40.678 25.306 5.428 8.142 -5.277 1.640 "O5'" LAQ 16 LAQ "C5'" C5* C 0 1 N N N 41.789 24.648 6.036 8.948 -6.439 1.555 "C5'" LAQ 17 LAQ "C4'" C4* C 0 1 N N R 42.835 24.419 4.947 8.156 -7.628 2.070 "C4'" LAQ 18 LAQ "C3'" C3* C 0 1 N N S 44.031 23.592 5.387 8.925 -8.936 2.014 "C3'" LAQ 19 LAQ "O3'" O3* O 0 1 N N N 43.754 22.195 5.308 9.808 -9.081 3.106 "O3'" LAQ 20 LAQ "C2'" C2* C 0 1 N N R 45.101 24.038 4.407 7.810 -9.965 1.998 "C2'" LAQ 21 LAQ "O2'" O2* O 0 1 N N N 44.800 23.497 3.121 7.358 -10.257 3.319 "O2'" LAQ 22 LAQ "C1'" C1* C 0 1 N N R 44.805 25.517 4.271 6.697 -9.247 1.231 "C1'" LAQ 23 LAQ "O4'" O4* O 0 1 N N N 43.405 25.666 4.540 6.998 -7.835 1.245 "O4'" LAQ 24 LAQ N9 N9 N 0 1 Y N N 45.525 26.375 5.243 6.552 -9.701 -0.153 N9 LAQ 25 LAQ C8 C8 C 0 1 Y N N 46.235 26.007 6.330 7.533 -9.706 -1.109 C8 LAQ 26 LAQ N7 N7 N 0 1 Y N N 46.725 27.091 6.978 7.102 -10.172 -2.263 N7 LAQ 27 LAQ C5 C5 C 0 1 Y N N 46.308 28.180 6.304 5.783 -10.482 -2.046 C5 LAQ 28 LAQ C6 C6 C 0 1 Y N N 46.456 29.651 6.423 4.796 -11.009 -2.872 C6 LAQ 29 LAQ N6 N6 N 0 1 N N N 47.158 30.217 7.435 5.075 -11.328 -4.212 N6 LAQ 30 LAQ N1 N1 N 0 1 Y N N 45.861 30.421 5.483 3.555 -11.213 -2.367 N1 LAQ 31 LAQ C2 C2 C 0 1 Y N N 45.148 29.912 4.466 3.346 -10.887 -1.069 C2 LAQ 32 LAQ N3 N3 N 0 1 Y N N 44.980 28.588 4.301 4.217 -10.373 -0.174 N3 LAQ 33 LAQ C4 C4 C 0 1 Y N N 45.525 27.696 5.164 5.421 -10.197 -0.739 C4 LAQ 34 LAQ HO2P HO2P H 0 0 N N N 38.795 23.315 5.908 10.288 -3.229 1.414 HO2P LAQ 35 LAQ H111 1H11 H 0 0 N N N 38.426 28.490 8.804 8.156 -6.792 -2.574 H111 LAQ 36 LAQ H112 2H11 H 0 0 N N N 39.951 27.759 9.485 7.783 -5.235 -3.362 H112 LAQ 37 LAQ H121 1H12 H 0 0 N N N 41.169 29.658 8.243 5.370 -5.852 -3.443 H121 LAQ 38 LAQ H122 2H12 H 0 0 N N N 39.546 30.437 8.132 5.713 -7.373 -2.627 H122 LAQ 39 LAQ H131 1H13 H 0 0 N N N 39.307 30.281 10.585 7.177 -8.080 -4.527 H131 LAQ 40 LAQ H132 2H13 H 0 0 N N N 40.946 29.523 10.685 6.874 -6.544 -5.342 H132 LAQ 41 LAQ H141 1H14 H 0 0 N N N 41.922 31.552 9.660 4.415 -7.081 -5.411 H141 LAQ 42 LAQ H142 2H14 H 0 0 N N N 40.267 32.308 9.665 4.740 -8.630 -4.629 H142 LAQ 43 LAQ H15 H15 H 0 1 N N N 40.171 32.030 12.059 6.177 -9.308 -6.522 H15 LAQ 44 LAQ H171 1H17 H 0 0 N N N 43.164 34.538 12.873 6.250 -7.338 -9.809 H171 LAQ 45 LAQ H172 2H17 H 0 0 N N N 41.464 34.633 13.421 6.810 -8.864 -9.101 H172 LAQ 46 LAQ H161 1H16 H 0 0 N N N 42.617 33.525 10.902 6.991 -7.138 -7.361 H161 LAQ 47 LAQ H162 2H16 H 0 0 N N N 40.959 34.200 11.252 5.359 -6.567 -7.665 H162 LAQ 48 LAQ "H5'1" 1H5* H 0 0 N N N 41.472 23.686 6.466 9.236 -6.593 0.511 "H5'1" LAQ 49 LAQ "H5'2" 2H5* H 0 0 N N N 42.204 25.260 6.850 9.849 -6.287 2.157 "H5'2" LAQ 50 LAQ "H4'" H4* H 0 1 N N N 42.282 23.892 4.155 7.818 -7.409 3.090 "H4'" LAQ 51 LAQ "H3'" H3* H 0 1 N N N 44.324 23.742 6.437 9.497 -9.001 1.081 "H3'" LAQ 52 LAQ "HO3'" HO3* H 0 0 N N N 43.692 21.935 4.396 10.613 -9.491 2.755 "HO3'" LAQ 53 LAQ "H2'" H2* H 0 1 N N N 46.117 23.760 4.723 8.119 -10.914 1.550 "H2'" LAQ 54 LAQ "HO2'" HO2* H 0 0 N N N 44.733 24.202 2.488 6.403 -10.438 3.264 "HO2'" LAQ 55 LAQ "H1'" H1* H 0 1 N N N 45.123 25.834 3.267 5.712 -9.393 1.686 "H1'" LAQ 56 LAQ H8 H8 H 0 1 N N N 46.392 24.985 6.642 8.538 -9.360 -0.906 H8 LAQ 57 LAQ HN61 1HN6 H 0 0 N N N 48.105 30.356 7.147 6.028 -11.436 -4.504 HN61 LAQ 58 LAQ HN62 2HN6 H 0 0 N N N 46.749 31.098 7.672 4.327 -11.350 -4.879 HN62 LAQ 59 LAQ H2 H2 H 0 1 N N N 44.694 30.588 3.757 2.341 -11.063 -0.699 H2 LAQ 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LAQ O2P P SING N N 1 LAQ O2P HO2P SING N N 2 LAQ P O1P DOUB N N 3 LAQ P "O5'" SING N N 4 LAQ P O3P SING N N 5 LAQ O3P C10 SING N N 6 LAQ C10 O10 DOUB N N 7 LAQ C10 C11 SING N N 8 LAQ C11 C12 SING N N 9 LAQ C11 H111 SING N N 10 LAQ C11 H112 SING N N 11 LAQ C12 C13 SING N N 12 LAQ C12 H121 SING N N 13 LAQ C12 H122 SING N N 14 LAQ C13 C14 SING N N 15 LAQ C13 H131 SING N N 16 LAQ C13 H132 SING N N 17 LAQ C14 C15 SING N N 18 LAQ C14 H141 SING N N 19 LAQ C14 H142 SING N N 20 LAQ C15 C16 SING N N 21 LAQ C15 S15 SING N N 22 LAQ C15 H15 SING N N 23 LAQ S15 S17 SING N N 24 LAQ S17 C17 SING N N 25 LAQ C17 C16 SING N N 26 LAQ C17 H171 SING N N 27 LAQ C17 H172 SING N N 28 LAQ C16 H161 SING N N 29 LAQ C16 H162 SING N N 30 LAQ "O5'" "C5'" SING N N 31 LAQ "C5'" "C4'" SING N N 32 LAQ "C5'" "H5'1" SING N N 33 LAQ "C5'" "H5'2" SING N N 34 LAQ "C4'" "O4'" SING N N 35 LAQ "C4'" "C3'" SING N N 36 LAQ "C4'" "H4'" SING N N 37 LAQ "C3'" "C2'" SING N N 38 LAQ "C3'" "O3'" SING N N 39 LAQ "C3'" "H3'" SING N N 40 LAQ "O3'" "HO3'" SING N N 41 LAQ "C2'" "O2'" SING N N 42 LAQ "C2'" "C1'" SING N N 43 LAQ "C2'" "H2'" SING N N 44 LAQ "O2'" "HO2'" SING N N 45 LAQ "C1'" "O4'" SING N N 46 LAQ "C1'" N9 SING N N 47 LAQ "C1'" "H1'" SING N N 48 LAQ N9 C4 SING Y N 49 LAQ N9 C8 SING Y N 50 LAQ C8 N7 DOUB Y N 51 LAQ C8 H8 SING N N 52 LAQ N7 C5 SING Y N 53 LAQ C5 C4 DOUB Y N 54 LAQ C5 C6 SING Y N 55 LAQ C6 N1 DOUB Y N 56 LAQ C6 N6 SING N N 57 LAQ N6 HN61 SING N N 58 LAQ N6 HN62 SING N N 59 LAQ N1 C2 SING Y N 60 LAQ C2 N3 DOUB Y N 61 LAQ C2 H2 SING N N 62 LAQ N3 C4 SING Y N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LAQ SMILES ACDLabs 10.04 "O=P(O)(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)OC(=O)CCCCC4SSCC4" LAQ SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)OC(=O)CCCC[C@@H]4CCSS4)[C@@H](O)[C@H]3O" LAQ SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)CCCC[CH]4CCSS4)[CH](O)[CH]3O" LAQ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OC(=O)CCCC[C@@H]4CCSS4)O)O)N" LAQ SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)CCCCC4CCSS4)O)O)N" LAQ InChI InChI 1.03 "InChI=1S/C18H26N5O8PS2/c19-16-13-17(21-8-20-16)23(9-22-13)18-15(26)14(25)11(30-18)7-29-32(27,28)31-12(24)4-2-1-3-10-5-6-33-34-10/h8-11,14-15,18,25-26H,1-7H2,(H,27,28)(H2,19,20,21)/t10-,11-,14-,15-,18-/m1/s1" LAQ InChIKey InChI 1.03 QWEGOCJRZOKSOE-ADUAKINBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LAQ "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-({5-[(3R)-1,2-dithiolan-3-yl]pentanoyl}oxy)(hydroxy)phosphoryl]adenosine" LAQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 5-[(3R)-1,2-dithiolan-3-yl]pentanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LAQ "Create component" 2006-12-27 RCSB LAQ "Modify descriptor" 2011-06-04 RCSB LAQ "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LAQ _pdbx_chem_comp_synonyms.name LIPOYL-AMP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##