data_LAR # _chem_comp.id LAR _chem_comp.name "LATRUNCULIN A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-04-13 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.550 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ESV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LAR S1 S1 S 0 1 N N N 20.246 10.112 81.204 5.547 -0.558 -0.845 S1 LAR 1 LAR N1 N1 N 0 1 N N N 20.159 8.684 79.108 3.540 0.989 -1.063 N1 LAR 2 LAR O1 O1 O 0 1 N N N 18.556 10.321 74.908 -2.382 0.653 0.093 O1 LAR 3 LAR O2 O2 O 0 1 N N N 16.586 10.009 75.984 -0.801 2.170 0.410 O2 LAR 4 LAR O3 O3 O 0 1 N N N 16.538 8.351 79.185 2.053 -0.501 1.943 O3 LAR 5 LAR O4 O4 O 0 1 N N N 17.690 10.332 78.857 3.701 1.099 1.734 O4 LAR 6 LAR O5 O5 O 0 1 N N N 22.116 9.872 79.355 5.365 1.745 -2.164 O5 LAR 7 LAR C1 C1 C 0 1 N N N 17.432 10.715 75.210 -2.073 1.826 0.113 C1 LAR 8 LAR C2 C2 C 0 1 N N N 16.850 12.006 74.827 -3.065 2.865 -0.178 C2 LAR 9 LAR C3 C3 C 0 1 N N N 15.855 12.721 75.366 -4.368 2.611 -0.217 C3 LAR 10 LAR C4 C4 C 0 1 N N N 15.106 12.301 76.594 -4.913 1.237 0.061 C4 LAR 11 LAR C5 C5 C 0 1 N N N 13.654 12.559 76.368 -4.852 0.362 -1.191 C5 LAR 12 LAR C6 C6 C 0 1 N N N 12.760 11.918 77.371 -4.887 -1.090 -0.781 C6 LAR 13 LAR C7 C7 C 0 1 N N N 13.022 11.214 78.478 -3.750 -1.773 -0.659 C7 LAR 14 LAR C8 C8 C 0 1 N N N 11.975 10.664 79.282 -3.785 -3.181 -0.253 C8 LAR 15 LAR C9 C9 C 0 1 N N N 12.245 10.005 80.427 -2.714 -3.922 -0.037 C9 LAR 16 LAR C10 C10 C 0 1 N N S 13.649 9.690 80.857 -1.301 -3.433 -0.171 C10 LAR 17 LAR C11 C11 C 0 1 N N N 14.093 8.306 80.468 -1.061 -2.238 0.747 C11 LAR 18 LAR C12 C12 C 0 1 N N N 14.182 8.083 78.979 0.431 -1.895 0.783 C12 LAR 19 LAR C13 C13 C 0 1 N N R 15.387 8.676 78.306 0.711 -0.930 1.936 C13 LAR 20 LAR C14 C14 C 0 1 N N N 15.615 8.099 76.932 -0.243 0.266 1.849 C14 LAR 21 LAR C15 C15 C 0 1 N N R 16.919 8.624 76.378 0.142 1.089 0.614 C15 LAR 22 LAR C16 C16 C 0 1 N N N 18.093 8.564 77.318 1.550 1.643 0.832 C16 LAR 23 LAR C17 C17 C 0 1 N N R 17.761 8.913 78.765 2.543 0.515 1.097 C17 LAR 24 LAR C18 C18 C 0 1 N N R 18.810 8.385 79.717 3.015 -0.075 -0.237 C18 LAR 25 LAR C19 C19 C 0 1 N N N 18.841 8.920 81.124 4.070 -1.154 0.038 C19 LAR 26 LAR C20 C20 C 0 1 N N N 21.006 9.512 79.691 4.805 0.919 -1.469 C20 LAR 27 LAR C21 C21 C 0 1 N N N 15.457 14.053 74.681 -5.330 3.729 -0.550 C21 LAR 28 LAR C22 C22 C 0 1 N N N 13.800 9.983 82.427 -0.993 -3.076 -1.624 C22 LAR 29 LAR HN1 HN1 H 0 1 N N N 20.525 8.297 78.237 2.981 1.740 -1.316 HN1 LAR 30 LAR HO4 HO4 H 0 1 N N N 18.514 10.710 78.574 3.519 1.491 2.600 HO4 LAR 31 LAR H21 1H2 H 0 1 N N N 17.241 12.552 73.952 -2.726 3.881 -0.367 H21 LAR 32 LAR H41 1H4 H 0 1 N N N 15.314 11.244 76.883 -4.348 0.770 0.866 H41 LAR 33 LAR H42 2H4 H 0 1 N N N 15.490 12.790 77.519 -5.957 1.329 0.378 H42 LAR 34 LAR H51 1H5 H 0 1 N N N 13.455 13.654 76.311 -5.713 0.578 -1.827 H51 LAR 35 LAR H52 2H5 H 0 1 N N N 13.360 12.260 75.334 -3.935 0.567 -1.742 H52 LAR 36 LAR H61 1H6 H 0 1 N N N 11.663 11.977 77.272 -5.832 -1.574 -0.589 H61 LAR 37 LAR H71 1H7 H 0 1 N N N 14.089 11.088 78.725 -2.824 -1.271 -0.875 H71 LAR 38 LAR H81 1H8 H 0 1 N N N 10.910 10.752 79.006 -4.765 -3.651 -0.120 H81 LAR 39 LAR H91 1H9 H 0 1 N N N 11.341 9.730 80.996 -2.871 -4.964 0.257 H91 LAR 40 LAR H101 1H10 H 0 0 N N N 14.345 10.362 80.303 -0.624 -4.244 0.134 H101 LAR 41 LAR H111 1H11 H 0 0 N N N 15.061 8.053 80.959 -1.617 -1.375 0.387 H111 LAR 42 LAR H112 2H11 H 0 0 N N N 13.436 7.538 80.939 -1.395 -2.484 1.757 H112 LAR 43 LAR H121 1H12 H 0 0 N N N 14.116 6.993 78.752 1.008 -2.809 0.930 H121 LAR 44 LAR H122 2H12 H 0 0 N N N 13.251 8.445 78.482 0.715 -1.434 -0.161 H122 LAR 45 LAR H131 1H13 H 0 0 N N N 15.249 9.773 78.164 0.498 -1.460 2.878 H131 LAR 46 LAR H141 1H14 H 0 0 N N N 15.573 6.984 76.929 -1.269 -0.075 1.775 H141 LAR 47 LAR H142 2H14 H 0 0 N N N 14.757 8.290 76.246 -0.127 0.885 2.741 H142 LAR 48 LAR H151 1H15 H 0 0 N N N 17.277 7.985 75.536 0.139 0.442 -0.263 H151 LAR 49 LAR H161 1H16 H 0 0 N N N 18.584 7.564 77.262 1.861 2.198 -0.058 H161 LAR 50 LAR H162 2H16 H 0 0 N N N 18.923 9.207 76.943 1.541 2.328 1.684 H162 LAR 51 LAR H181 1H18 H 0 0 N N N 18.547 7.307 79.834 2.165 -0.531 -0.744 H181 LAR 52 LAR H191 1H19 H 0 0 N N N 18.897 8.119 81.898 3.747 -2.115 -0.363 H191 LAR 53 LAR H192 2H19 H 0 0 N N N 17.869 9.361 81.449 4.268 -1.232 1.107 H192 LAR 54 LAR H211 1H21 H 0 0 N N N 14.628 14.648 75.130 -4.772 4.649 -0.723 H211 LAR 55 LAR H212 2H21 H 0 0 N N N 16.360 14.699 74.587 -5.890 3.471 -1.449 H212 LAR 56 LAR H213 3H21 H 0 0 N N N 15.224 13.855 73.608 -6.021 3.873 0.280 H213 LAR 57 LAR H221 1H22 H 0 0 N N N 14.842 9.749 82.746 -1.672 -2.291 -1.957 H221 LAR 58 LAR H222 2H22 H 0 0 N N N 13.499 11.023 82.693 0.036 -2.723 -1.701 H222 LAR 59 LAR H223 3H22 H 0 0 N N N 13.039 9.438 83.033 -1.122 -3.958 -2.251 H223 LAR 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LAR S1 C19 SING N N 1 LAR S1 C20 SING N N 2 LAR N1 C18 SING N N 3 LAR N1 C20 SING N N 4 LAR N1 HN1 SING N N 5 LAR O1 C1 DOUB N N 6 LAR O2 C1 SING N N 7 LAR O2 C15 SING N N 8 LAR O3 C13 SING N N 9 LAR O3 C17 SING N N 10 LAR O4 C17 SING N N 11 LAR O4 HO4 SING N N 12 LAR O5 C20 DOUB N N 13 LAR C1 C2 SING N N 14 LAR C2 C3 DOUB N Z 15 LAR C2 H21 SING N N 16 LAR C3 C4 SING N N 17 LAR C3 C21 SING N N 18 LAR C4 C5 SING N N 19 LAR C4 H41 SING N N 20 LAR C4 H42 SING N N 21 LAR C5 C6 SING N N 22 LAR C5 H51 SING N N 23 LAR C5 H52 SING N N 24 LAR C6 C7 DOUB N E 25 LAR C6 H61 SING N N 26 LAR C7 C8 SING N N 27 LAR C7 H71 SING N N 28 LAR C8 C9 DOUB N Z 29 LAR C8 H81 SING N N 30 LAR C9 C10 SING N N 31 LAR C9 H91 SING N N 32 LAR C10 C11 SING N N 33 LAR C10 C22 SING N N 34 LAR C10 H101 SING N N 35 LAR C11 C12 SING N N 36 LAR C11 H111 SING N N 37 LAR C11 H112 SING N N 38 LAR C12 C13 SING N N 39 LAR C12 H121 SING N N 40 LAR C12 H122 SING N N 41 LAR C13 C14 SING N N 42 LAR C13 H131 SING N N 43 LAR C14 C15 SING N N 44 LAR C14 H141 SING N N 45 LAR C14 H142 SING N N 46 LAR C15 C16 SING N N 47 LAR C15 H151 SING N N 48 LAR C16 C17 SING N N 49 LAR C16 H161 SING N N 50 LAR C16 H162 SING N N 51 LAR C17 C18 SING N N 52 LAR C18 C19 SING N N 53 LAR C18 H181 SING N N 54 LAR C19 H191 SING N N 55 LAR C19 H192 SING N N 56 LAR C21 H211 SING N N 57 LAR C21 H212 SING N N 58 LAR C21 H213 SING N N 59 LAR C22 H221 SING N N 60 LAR C22 H222 SING N N 61 LAR C22 H223 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LAR SMILES ACDLabs 10.04 "O=C3OC2CC(OC(O)(C1NC(=O)SC1)C2)CCC(C=CC=CCCC(=C3)C)C" LAR InChI InChI 1.03 "InChI=1S/C22H31NO5S/c1-15-7-5-3-4-6-8-16(2)11-20(24)27-18-12-17(10-9-15)28-22(26,13-18)19-14-29-21(25)23-19/h3-5,7,11,15,17-19,26H,6,8-10,12-14H2,1-2H3,(H,23,25)/b4-3+,7-5-,16-11-/t15-,17-,18-,19+,22-/m1/s1" LAR InChIKey InChI 1.03 DDVBPZROPPMBLW-IZGXTMSKSA-N LAR SMILES_CANONICAL CACTVS 3.385 "C[C@H]\1CC[C@@H]2C[C@H](C[C@@](O)(O2)[C@@H]3CSC(=O)N3)OC(=O)\C=C(C)/CC\C=C\C=C\1" LAR SMILES CACTVS 3.385 "C[CH]1CC[CH]2C[CH](C[C](O)(O2)[CH]3CSC(=O)N3)OC(=O)C=C(C)CCC=CC=C1" LAR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C[C@H]/1CC[C@@H]2C[C@H](C[C@@](O2)([C@@H]3CSC(=O)N3)O)OC(=O)/C=C(\CC/C=C/C=C1)/C" LAR SMILES "OpenEye OEToolkits" 1.7.5 "CC1CCC2CC(CC(O2)(C3CSC(=O)N3)O)OC(=O)C=C(CCC=CC=C1)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LAR "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-4-[(1R,4Z,8E,10Z,12S,15R,17R)-17-hydroxy-5,12-dimethyl-3-oxo-2,16-dioxabicyclo[13.3.1]nonadeca-4,8,10-trien-17-yl]-1,3-thiazolidin-2-one" LAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R)-4-[(1R,4S,5Z,7E,11Z,15R,17R)-17-hydroxy-4,11-dimethyl-13-oxo-14,18-dioxabicyclo[13.3.1]nonadeca-5,7,11-trien-17-yl]-1,3-thiazolidin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LAR "Create component" 2000-04-13 RCSB LAR "Modify descriptor" 2011-06-04 RCSB LAR "Modify descriptor" 2012-01-05 RCSB LAR "Modify coordinates" 2012-01-05 RCSB LAR "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LAR _pdbx_chem_comp_synonyms.name "4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##