data_LB1 # _chem_comp.id LB1 _chem_comp.name "(1S,2R,3S,4R)-3-(4-methylpiperazine-1-carbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-17 _chem_comp.pdbx_modified_date 2018-07-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 268.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WG8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LB1 C10 C1 C 0 1 N N R 4.507 -1.932 -9.962 -1.518 -0.779 -0.633 C10 LB1 1 LB1 C13 C2 C 0 1 N N N 2.893 -0.352 -11.160 -0.103 0.865 0.642 C13 LB1 2 LB1 C07 C3 C 0 1 N N S 3.947 -0.508 -10.091 -1.192 0.717 -0.389 C07 LB1 3 LB1 C08 C4 C 0 1 N N R 5.208 0.299 -10.476 -2.541 1.281 0.148 C08 LB1 4 LB1 C09 C5 C 0 1 N N S 5.999 -1.691 -10.226 -3.012 -0.880 -0.204 C09 LB1 5 LB1 C11 C6 C 0 1 N N N 6.141 0.488 -9.275 -3.488 1.332 -1.088 C11 LB1 6 LB1 C12 C7 C 0 1 N N N 6.650 -0.947 -9.056 -3.814 -0.164 -1.332 C12 LB1 7 LB1 C14 C8 C 0 1 N N N 3.989 -2.963 -10.942 -0.650 -1.661 0.227 C14 LB1 8 LB1 O01 O1 O 0 1 N N N 5.968 -0.667 -11.249 -3.071 0.119 0.867 O01 LB1 9 LB1 O02 O2 O 0 1 N N N 3.208 -0.762 -12.283 -0.381 0.860 1.823 O02 LB1 10 LB1 O04 O3 O 0 1 N N N 4.671 -3.248 -11.931 -0.985 -1.919 1.359 O04 LB1 11 LB1 H1 H1 H 0 1 N N N 4.368 -2.291 -8.932 -1.400 -1.033 -1.686 H1 LB1 12 LB1 H3 H3 H 0 1 N N N 3.563 -0.164 -9.119 -0.908 1.207 -1.320 H3 LB1 13 LB1 H4 H4 H 0 1 N N N 4.979 1.236 -11.004 -2.467 2.207 0.718 H4 LB1 14 LB1 H5 H5 H 0 1 N N N 6.540 -2.606 -10.511 -3.358 -1.882 0.051 H5 LB1 15 LB1 H6 H6 H 0 1 N N N 6.966 1.176 -9.511 -4.394 1.892 -0.858 H6 LB1 16 LB1 H7 H7 H 0 1 N N N 5.594 0.859 -8.396 -2.976 1.761 -1.949 H7 LB1 17 LB1 H8 H8 H 0 1 N N N 6.313 -1.348 -8.089 -3.464 -0.480 -2.315 H8 LB1 18 LB1 H9 H9 H 0 1 N N N 7.748 -0.996 -9.111 -4.883 -0.349 -1.223 H9 LB1 19 LB1 O1 O4 O 0 1 N N N ? ? ? 0.494 -2.161 -0.264 O1 LB1 20 LB1 N1 N1 N 0 1 N N N ? ? ? 1.180 1.002 0.253 N1 LB1 21 LB1 C2 C9 C 0 1 N N N ? ? ? 2.258 1.147 1.243 C2 LB1 22 LB1 C3 C10 C 0 1 N N N ? ? ? 3.354 0.125 0.923 C3 LB1 23 LB1 N2 N2 N 0 1 N N N ? ? ? 3.771 0.281 -0.477 N2 LB1 24 LB1 C5 C11 C 0 1 N N N ? ? ? 2.664 -0.007 -1.398 C5 LB1 25 LB1 C6 C12 C 0 1 N N N ? ? ? 1.540 1.004 -1.173 C6 LB1 26 LB1 C1 C13 C 0 1 N N N ? ? ? 4.937 -0.562 -0.776 C1 LB1 27 LB1 H2 H2 H 0 1 N N N ? ? ? 1.017 -2.722 0.325 H2 LB1 28 LB1 H10 H10 H 0 1 N N N ? ? ? 2.671 2.155 1.190 H10 LB1 29 LB1 H11 H11 H 0 1 N N N ? ? ? 1.865 0.962 2.243 H11 LB1 30 LB1 H12 H12 H 0 1 N N N ? ? ? 4.209 0.291 1.578 H12 LB1 31 LB1 H13 H13 H 0 1 N N N ? ? ? 2.968 -0.883 1.078 H13 LB1 32 LB1 H14 H14 H 0 1 N N N ? ? ? 3.018 0.064 -2.426 H14 LB1 33 LB1 H15 H15 H 0 1 N N N ? ? ? 2.287 -1.013 -1.211 H15 LB1 34 LB1 H16 H16 H 0 1 N N N ? ? ? 0.673 0.726 -1.772 H16 LB1 35 LB1 H17 H17 H 0 1 N N N ? ? ? 1.881 1.999 -1.457 H17 LB1 36 LB1 H18 H18 H 0 1 N N N ? ? ? 4.684 -1.608 -0.601 H18 LB1 37 LB1 H19 H19 H 0 1 N N N ? ? ? 5.225 -0.427 -1.818 H19 LB1 38 LB1 H20 H20 H 0 1 N N N ? ? ? 5.767 -0.276 -0.130 H20 LB1 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LB1 O02 C13 DOUB N N 1 LB1 O04 C14 DOUB N N 2 LB1 O01 C08 SING N N 3 LB1 O01 C09 SING N N 4 LB1 C13 C07 SING N N 5 LB1 C14 C10 SING N N 6 LB1 C08 C07 SING N N 7 LB1 C08 C11 SING N N 8 LB1 C09 C10 SING N N 9 LB1 C09 C12 SING N N 10 LB1 C07 C10 SING N N 11 LB1 C11 C12 SING N N 12 LB1 C10 H1 SING N N 13 LB1 C07 H3 SING N N 14 LB1 C08 H4 SING N N 15 LB1 C09 H5 SING N N 16 LB1 C11 H6 SING N N 17 LB1 C11 H7 SING N N 18 LB1 C12 H8 SING N N 19 LB1 C12 H9 SING N N 20 LB1 C14 O1 SING N N 21 LB1 C13 N1 SING N N 22 LB1 N1 C2 SING N N 23 LB1 C2 C3 SING N N 24 LB1 C3 N2 SING N N 25 LB1 N2 C5 SING N N 26 LB1 C5 C6 SING N N 27 LB1 C6 N1 SING N N 28 LB1 N2 C1 SING N N 29 LB1 O1 H2 SING N N 30 LB1 C2 H10 SING N N 31 LB1 C2 H11 SING N N 32 LB1 C3 H12 SING N N 33 LB1 C3 H13 SING N N 34 LB1 C5 H14 SING N N 35 LB1 C5 H15 SING N N 36 LB1 C6 H16 SING N N 37 LB1 C6 H17 SING N N 38 LB1 C1 H18 SING N N 39 LB1 C1 H19 SING N N 40 LB1 C1 H20 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LB1 SMILES ACDLabs 12.01 "C2(C(C(N1CCN(CC1)C)=O)C3CCC2O3)C(O)=O" LB1 InChI InChI 1.03 "InChI=1S/C13H20N2O4/c1-14-4-6-15(7-5-14)12(16)10-8-2-3-9(19-8)11(10)13(17)18/h8-11H,2-7H2,1H3,(H,17,18)/t8-,9+,10-,11+/m1/s1" LB1 InChIKey InChI 1.03 JUQMLSGOTNKJKI-YTWAJWBKSA-N LB1 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)C(=O)[C@@H]2[C@H]3CC[C@H](O3)[C@@H]2C(O)=O" LB1 SMILES CACTVS 3.385 "CN1CCN(CC1)C(=O)[CH]2[CH]3CC[CH](O3)[CH]2C(O)=O" LB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C(=O)[C@@H]2[C@H]3CC[C@@H]([C@@H]2C(=O)O)O3" LB1 SMILES "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C(=O)C2C3CCC(C2C(=O)O)O3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LB1 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2R,3S,4R)-3-(4-methylpiperazine-1-carbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid" LB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{R},3~{S},4~{R})-3-(4-methylpiperazin-1-yl)carbonyl-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LB1 "Create component" 2017-07-17 RCSB LB1 "Initial release" 2018-07-18 RCSB #