data_LB3 # _chem_comp.id LB3 _chem_comp.name "(9R,10R,11S,12R,13R,14R)-4-amino-9-(3,4-difluorophenyl)-6,7,8,9,10,11,12,13-octahydro-10,13-epoxy[1,3]diazecino[1,2-e]purine-11,12-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 F2 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-01 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.371 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LB3 N1 N1 N 0 1 Y N N 14.124 -37.333 -4.798 2.796 0.412 1.499 N1 LB3 1 LB3 N3 N2 N 0 1 Y N N 13.532 -34.259 -2.812 4.534 2.713 -0.711 N3 LB3 2 LB3 C4 C1 C 0 1 Y N N 21.675 -39.437 -6.384 -2.668 1.497 0.022 C4 LB3 3 LB3 C5 C2 C 0 1 Y N N 20.360 -39.853 -6.189 -2.524 0.145 0.275 C5 LB3 4 LB3 C6 C3 C 0 1 N N R 19.244 -38.825 -6.119 -1.155 -0.432 0.527 C6 LB3 5 LB3 C7 C4 C 0 1 N N N 17.930 -39.328 -6.746 -1.120 -1.098 1.907 C7 LB3 6 LB3 C8 C5 C 0 1 N N N 16.710 -39.587 -5.880 0.253 -1.051 2.556 C8 LB3 7 LB3 C10 C6 C 0 1 Y N N 14.143 -36.248 -3.934 3.341 1.140 0.507 C10 LB3 8 LB3 C13 C7 C 0 1 Y N N 15.403 -36.077 -3.375 2.895 0.589 -0.718 C13 LB3 9 LB3 C15 C8 C 0 1 N N R 17.519 -37.343 -3.382 1.386 -1.365 -1.299 C15 LB3 10 LB3 C17 C9 C 0 1 N N S 19.100 -39.137 -3.436 -0.074 -2.656 0.131 C17 LB3 11 LB3 F1 F1 F 0 1 N N N 23.973 -39.972 -6.432 -4.067 3.349 -0.451 F1 LB3 12 LB3 F F2 F 0 1 N N N 23.432 -42.584 -6.168 -6.269 1.720 -0.396 F LB3 13 LB3 C9 C10 C 0 1 Y N N 15.373 -37.743 -4.797 2.056 -0.531 0.978 C9 LB3 14 LB3 C3 C11 C 0 1 Y N N 22.684 -40.371 -6.385 -3.926 2.028 -0.204 C3 LB3 15 LB3 O O1 O 0 1 N N N 18.408 -37.123 -4.462 0.048 -0.915 -1.507 O LB3 16 LB3 C C12 C 0 1 Y N N 22.411 -41.710 -6.238 -5.041 1.204 -0.176 C LB3 17 LB3 O2 O2 O 0 1 N N N 20.117 -38.822 -2.498 -0.801 -3.884 0.052 O2 LB3 18 LB3 C11 C13 C 0 1 Y N N 13.170 -35.277 -3.626 4.201 2.252 0.498 C11 LB3 19 LB3 C12 C14 C 0 1 Y N N 14.788 -34.223 -2.342 4.092 2.169 -1.827 C12 LB3 20 LB3 N N3 N 0 1 N N N 15.789 -38.459 -5.862 1.317 -1.492 1.661 N LB3 21 LB3 N2 N4 N 0 1 N N N 11.936 -35.271 -4.143 4.672 2.831 1.666 N2 LB3 22 LB3 C16 C15 C 0 1 N N R 17.687 -38.803 -2.947 1.253 -2.763 -0.657 C16 LB3 23 LB3 N5 N5 N 0 1 Y N N 16.185 -37.091 -3.899 2.090 -0.463 -0.395 N5 LB3 24 LB3 N4 N6 N 0 1 Y N N 15.788 -35.083 -2.560 3.284 1.122 -1.875 N4 LB3 25 LB3 C14 C16 C 0 1 N N R 19.249 -38.267 -4.680 -0.838 -1.512 -0.540 C14 LB3 26 LB3 C2 C17 C 0 1 Y N N 20.094 -41.217 -6.069 -3.635 -0.678 0.297 C2 LB3 27 LB3 C1 C18 C 0 1 Y N N 21.120 -42.150 -6.100 -4.893 -0.149 0.078 C1 LB3 28 LB3 O1 O3 O 0 1 N N N 17.468 -39.018 -1.558 1.164 -3.775 -1.662 O1 LB3 29 LB3 H1 H1 H 0 1 N N N 21.900 -38.391 -6.533 -1.800 2.138 0.005 H1 LB3 30 LB3 H2 H2 H 0 1 N N N 19.570 -37.990 -6.756 -0.408 0.360 0.481 H2 LB3 31 LB3 H3 H3 H 0 1 N N N 17.631 -38.579 -7.494 -1.834 -0.594 2.559 H3 LB3 32 LB3 H4 H4 H 0 1 N N N 18.165 -40.277 -7.250 -1.422 -2.140 1.802 H4 LB3 33 LB3 H5 H5 H 0 1 N N N 16.181 -40.468 -6.271 0.458 -0.027 2.869 H5 LB3 34 LB3 H6 H6 H 0 1 N N N 17.044 -39.786 -4.851 0.247 -1.691 3.438 H6 LB3 35 LB3 H7 H7 H 0 1 N N N 17.743 -36.676 -2.536 1.923 -1.439 -2.245 H7 LB3 36 LB3 H8 H8 H 0 1 N N N 19.145 -40.198 -3.724 0.121 -2.396 1.171 H8 LB3 37 LB3 H9 H9 H 0 1 N N N 20.017 -39.368 -1.727 -0.335 -4.642 0.432 H9 LB3 38 LB3 H10 H10 H 0 1 N N N 15.023 -33.386 -1.701 4.410 2.605 -2.762 H10 LB3 39 LB3 H11 H11 H 0 1 N N N 16.202 -37.785 -6.474 1.506 -2.436 1.545 H11 LB3 40 LB3 H12 H12 H 0 1 N N N 11.444 -34.461 -3.824 4.410 2.469 2.526 H12 LB3 41 LB3 H13 H13 H 0 1 N N N 11.993 -35.255 -5.141 5.264 3.598 1.622 H13 LB3 42 LB3 H14 H14 H 0 1 N N N 16.977 -39.412 -3.526 2.087 -2.959 0.017 H14 LB3 43 LB3 H15 H15 H 0 1 N N N 20.268 -37.865 -4.579 -1.750 -1.876 -1.014 H15 LB3 44 LB3 H16 H16 H 0 1 N N N 19.074 -41.552 -5.950 -3.520 -1.733 0.495 H16 LB3 45 LB3 H17 H17 H 0 1 N N N 20.905 -43.205 -6.017 -5.760 -0.792 0.099 H17 LB3 46 LB3 H18 H18 H 0 1 N N N 16.573 -38.788 -1.339 1.079 -4.672 -1.311 H18 LB3 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LB3 C7 C6 SING N N 1 LB3 C7 C8 SING N N 2 LB3 F1 C3 SING N N 3 LB3 C3 C4 DOUB Y N 4 LB3 C3 C SING Y N 5 LB3 C4 C5 SING Y N 6 LB3 C F SING N N 7 LB3 C C1 DOUB Y N 8 LB3 C5 C6 SING N N 9 LB3 C5 C2 DOUB Y N 10 LB3 C6 C14 SING N N 11 LB3 C1 C2 SING Y N 12 LB3 C8 N SING N N 13 LB3 N C9 SING N N 14 LB3 N1 C9 DOUB Y N 15 LB3 N1 C10 SING Y N 16 LB3 C9 N5 SING Y N 17 LB3 C14 O SING N N 18 LB3 C14 C17 SING N N 19 LB3 O C15 SING N N 20 LB3 N2 C11 SING N N 21 LB3 C10 C11 DOUB Y N 22 LB3 C10 C13 SING Y N 23 LB3 N5 C15 SING N N 24 LB3 N5 C13 SING Y N 25 LB3 C11 N3 SING Y N 26 LB3 C17 C16 SING N N 27 LB3 C17 O2 SING N N 28 LB3 C15 C16 SING N N 29 LB3 C13 N4 DOUB Y N 30 LB3 C16 O1 SING N N 31 LB3 N3 C12 DOUB Y N 32 LB3 N4 C12 SING Y N 33 LB3 C4 H1 SING N N 34 LB3 C6 H2 SING N N 35 LB3 C7 H3 SING N N 36 LB3 C7 H4 SING N N 37 LB3 C8 H5 SING N N 38 LB3 C8 H6 SING N N 39 LB3 C15 H7 SING N N 40 LB3 C17 H8 SING N N 41 LB3 O2 H9 SING N N 42 LB3 C12 H10 SING N N 43 LB3 N H11 SING N N 44 LB3 N2 H12 SING N N 45 LB3 N2 H13 SING N N 46 LB3 C16 H14 SING N N 47 LB3 C14 H15 SING N N 48 LB3 C2 H16 SING N N 49 LB3 C1 H17 SING N N 50 LB3 O1 H18 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LB3 SMILES ACDLabs 12.01 "Fc1ccc(cc1F)C1CCNc2nc3c(N)ncnc3n2C2OC1C(O)C2O" LB3 InChI InChI 1.03 "InChI=1S/C18H18F2N6O3/c19-9-2-1-7(5-10(9)20)8-3-4-22-18-25-11-15(21)23-6-24-16(11)26(18)17-13(28)12(27)14(8)29-17/h1-2,5-6,8,12-14,17,27-28H,3-4H2,(H,22,25)(H2,21,23,24)/t8-,12+,13-,14-,17-/m1/s1" LB3 InChIKey InChI 1.03 JZKFSFVCJQMNFZ-TXXSDKCWSA-N LB3 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n3[C@@H]4O[C@@H]([C@@H](O)[C@H]4O)[C@H](CCNc3nc12)c5ccc(F)c(F)c5" LB3 SMILES CACTVS 3.385 "Nc1ncnc2n3[CH]4O[CH]([CH](O)[CH]4O)[CH](CCNc3nc12)c5ccc(F)c(F)c5" LB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[C@H]2CCNc3nc4c(ncnc4n3[C@H]5[C@@H]([C@@H]([C@@H]2O5)O)O)N)F)F" LB3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2CCNc3nc4c(ncnc4n3C5C(C(C2O5)O)O)N)F)F" # _pdbx_chem_comp_identifier.comp_id LB3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(9R,10R,11S,12R,13R,14R)-4-amino-9-(3,4-difluorophenyl)-6,7,8,9,10,11,12,13-octahydro-10,13-epoxy[1,3]diazecino[1,2-e]purine-11,12-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LB3 "Create component" 2022-03-01 RCSB LB3 "Initial release" 2022-06-01 RCSB ##