data_LBX # _chem_comp.id LBX _chem_comp.name "(E)-5-hydroxy-3-oxo-N-(3-oxopropylidene)-L-norvaline" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H11 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 201.177 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LBX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U48 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LBX C10 C1 C 0 1 N N N N N N -53.890 19.303 38.058 -1.168 0.346 -0.243 C10 LBX 1 LBX C13 C2 C 0 1 N N N N N N -54.796 21.671 37.859 -3.230 1.722 -0.277 C13 LBX 2 LBX C02 C3 C 0 1 N N N N N N -49.970 15.157 37.313 4.043 1.360 0.026 C02 LBX 3 LBX C03 C4 C 0 1 N N N N N N -51.424 15.023 37.694 3.483 0.001 -0.303 C03 LBX 4 LBX C04 C5 C 0 1 N N N N N N -51.923 16.299 38.328 2.145 -0.168 0.371 C04 LBX 5 LBX C06 C6 C 0 1 N N S N N N -53.054 18.233 38.754 -0.186 -0.640 0.334 C06 LBX 6 LBX C07 C7 C 0 1 N N N N N N -53.715 17.836 40.089 -0.689 -2.042 0.107 C07 LBX 7 LBX C12 C8 C 0 1 N N N N N N -53.907 20.715 38.649 -2.412 0.709 0.526 C12 LBX 8 LBX N05 N1 N 0 1 N N N N N N -52.775 17.095 37.871 1.114 -0.476 -0.321 N05 LBX 9 LBX O01 O1 O 0 1 N N N N N N -49.630 15.885 36.441 5.142 1.457 0.517 O01 LBX 10 LBX O08 O2 O 0 1 N N N N N N -53.077 17.214 40.986 -1.870 -2.422 0.619 O08 LBX 11 LBX O09 O3 O 0 1 N N N N N N -54.912 18.168 40.314 -0.030 -2.824 -0.537 O09 LBX 12 LBX O11 O4 O 0 1 N N N N N N -54.519 19.035 37.089 -0.955 0.850 -1.320 O11 LBX 13 LBX O14 O5 O 0 1 N N N N N N -54.625 21.357 36.506 -4.410 2.066 0.452 O14 LBX 14 LBX H1 H1 H 0 1 N N N N N N -54.494 22.712 38.047 -2.634 2.618 -0.447 H1 LBX 15 LBX H2 H2 H 0 1 N N N N N N -55.849 21.536 38.149 -3.510 1.285 -1.235 H2 LBX 16 LBX H3 H3 H 0 1 N N N N N N -49.227 14.580 37.843 3.462 2.248 -0.176 H3 LBX 17 LBX H4 H4 H 0 1 N N N N N N -52.017 14.811 36.792 3.359 -0.090 -1.382 H4 LBX 18 LBX H5 H5 H 0 1 N N N N N N -51.536 14.195 38.410 4.168 -0.770 0.050 H5 LBX 19 LBX H6 H6 H 0 1 N N N N N N -51.496 16.555 39.286 2.057 -0.030 1.439 H6 LBX 20 LBX H8 H8 H 0 1 N N N N N N -52.090 18.698 39.007 -0.078 -0.462 1.404 H8 LBX 21 LBX H9 H9 H 0 1 N N N N N N -52.880 21.109 38.650 -3.008 -0.188 0.696 H9 LBX 22 LBX H10 H10 H 0 1 N N N N N N -54.280 20.660 39.682 -2.132 1.146 1.485 H10 LBX 23 LBX H13 H13 H 0 1 N N N N N N -53.638 17.085 41.742 -2.151 -3.331 0.446 H13 LBX 24 LBX H14 H14 H 0 1 N N N N N N -54.545 20.416 36.407 -4.979 2.705 0.002 H14 LBX 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LBX O01 C02 DOUB N N 1 LBX O14 C13 SING N N 2 LBX O11 C10 DOUB N N 3 LBX C02 C03 SING N N 4 LBX C03 C04 SING N N 5 LBX C13 C12 SING N N 6 LBX N05 C04 DOUB N N 7 LBX N05 C06 SING N N 8 LBX C10 C12 SING N N 9 LBX C10 C06 SING N N 10 LBX C06 C07 SING N N 11 LBX C07 O09 DOUB N N 12 LBX C07 O08 SING N N 13 LBX C13 H1 SING N N 14 LBX C13 H2 SING N N 15 LBX C02 H3 SING N N 16 LBX C03 H4 SING N N 17 LBX C03 H5 SING N N 18 LBX C04 H6 SING N N 19 LBX C06 H8 SING N N 20 LBX C12 H9 SING N N 21 LBX C12 H10 SING N N 22 LBX O08 H13 SING N N 23 LBX O14 H14 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LBX SMILES ACDLabs 12.01 "O=C(CCO)C(\N=C\CC=O)C(=O)O" LBX InChI InChI 1.03 "InChI=1S/C8H11NO5/c10-4-1-3-9-7(8(13)14)6(12)2-5-11/h3-4,7,11H,1-2,5H2,(H,13,14)/b9-3+/t7-/m0/s1" LBX InChIKey InChI 1.03 PXXGDOCPYMGSFI-FHYFFISESA-N LBX SMILES_CANONICAL CACTVS 3.385 "OCCC(=O)[C@H](N=CCC=O)C(O)=O" LBX SMILES CACTVS 3.385 "OCCC(=O)[CH](N=CCC=O)C(O)=O" LBX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CO)C(=O)[C@@H](C(=O)O)/N=C/CC=O" LBX SMILES "OpenEye OEToolkits" 2.0.7 "C(CO)C(=O)C(C(=O)O)N=CCC=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LBX "SYSTEMATIC NAME" ACDLabs 12.01 "(E)-5-hydroxy-3-oxo-N-(3-oxopropylidene)-L-norvaline" LBX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-5-oxidanyl-3-oxidanylidene-2-[(~{E})-3-oxidanylidenepropylideneamino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LBX "Create component" 2022-03-01 RCSB LBX "Initial release" 2022-05-25 RCSB LBX "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id LBX _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #