data_LBY # _chem_comp.id LBY _chem_comp.name "N~6~-(tert-butoxycarbonyl)-L-lysine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H22 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-07-05 _chem_comp.pdbx_modified_date 2012-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.303 _chem_comp.one_letter_code K _chem_comp.three_letter_code LBY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LBY C1 C1 C 0 1 N N N -8.936 50.135 -2.360 5.384 1.281 0.590 C1 LBY 1 LBY CT CT C 0 1 N N N -7.469 50.190 -2.795 5.242 -0.168 0.119 CT LBY 2 LBY C2 C2 C 0 1 N N N -6.655 51.023 -1.800 5.399 -0.227 -1.402 C2 LBY 3 LBY C3 C3 C 0 1 N N N -7.364 50.820 -4.184 6.324 -1.026 0.778 C3 LBY 4 LBY O2 O2 O 0 1 N N N -6.958 48.852 -2.866 3.932 -0.672 0.490 O2 LBY 5 LBY CZ CZ C 0 1 N N N -6.905 48.269 -1.635 2.863 -0.023 -0.010 CZ LBY 6 LBY O1 O1 O 0 1 N N N -7.319 48.886 -0.656 3.021 0.938 -0.737 O1 LBY 7 LBY NZ NZ N 0 1 N N N -6.474 47.016 -1.533 1.618 -0.439 0.296 NZ LBY 8 LBY CE CE C 0 1 N N N -6.082 46.224 -2.704 0.456 0.267 -0.248 CE LBY 9 LBY CD CD C 0 1 N N N -7.078 45.065 -2.792 -0.826 -0.403 0.249 CD LBY 10 LBY CG CG C 0 1 N N N -7.075 44.444 -4.188 -2.041 0.334 -0.319 CG LBY 11 LBY CB CB C 0 1 N N N -8.257 43.489 -4.366 -3.323 -0.336 0.178 CB LBY 12 LBY CA CA C 0 1 N N S -8.379 43.087 -5.837 -4.537 0.401 -0.390 CA LBY 13 LBY C C C 0 1 N N N -8.492 44.360 -6.680 -5.796 -0.331 -0.001 C LBY 14 LBY OXT OXT O 0 1 N Y N -9.385 45.174 -6.359 -6.179 -1.420 -0.687 OXT LBY 15 LBY O O O 0 1 N N N -7.674 44.500 -7.614 -6.462 0.063 0.927 O LBY 16 LBY N N N 0 1 N N N -7.179 42.338 -6.239 -4.578 1.766 0.150 N LBY 17 LBY H11 H11 H 0 1 N N N -9.006 49.681 -1.360 4.613 1.893 0.120 H11 LBY 18 LBY H12 H12 H 0 1 N N N -9.348 51.155 -2.329 5.271 1.324 1.673 H12 LBY 19 LBY H13 H13 H 0 1 N N N -9.509 49.530 -3.078 6.367 1.660 0.311 H13 LBY 20 LBY H21 H21 H 0 1 N N N -6.728 50.573 -0.799 6.383 0.151 -1.681 H21 LBY 21 LBY H22 H22 H 0 1 N N N -5.602 51.045 -2.116 5.299 -1.259 -1.737 H22 LBY 22 LBY H23 H23 H 0 1 N N N -7.051 52.049 -1.771 4.629 0.384 -1.871 H23 LBY 23 LBY H31 H31 H 0 1 N N N -7.752 51.849 -4.151 6.212 -0.983 1.861 H31 LBY 24 LBY H32 H32 H 0 1 N N N -6.311 50.835 -4.501 6.223 -2.058 0.442 H32 LBY 25 LBY H33 H33 H 0 1 N N N -7.954 50.229 -4.900 7.308 -0.647 0.499 H33 LBY 26 LBY HZ1 HZ1 H 0 1 N N N -6.415 46.598 -0.626 1.492 -1.206 0.876 HZ1 LBY 27 LBY HE2 HE2 H 0 1 N N N -5.059 45.839 -2.578 0.474 1.306 0.081 HE2 LBY 28 LBY HE3 HE3 H 0 1 N N N -6.132 46.839 -3.614 0.486 0.231 -1.337 HE3 LBY 29 LBY HD2 HD2 H 0 1 N N N -8.087 45.440 -2.568 -0.845 -1.442 -0.081 HD2 LBY 30 LBY HD3 HD3 H 0 1 N N N -6.801 44.296 -2.056 -0.856 -0.368 1.338 HD3 LBY 31 LBY HG2 HG2 H 0 1 N N N -6.138 43.887 -4.332 -2.022 1.372 0.011 HG2 LBY 32 LBY HG3 HG3 H 0 1 N N N -7.144 45.245 -4.938 -2.011 0.298 -1.408 HG3 LBY 33 LBY HB2 HB2 H 0 1 N N N -9.183 43.990 -4.046 -3.342 -1.375 -0.152 HB2 LBY 34 LBY HB3 HB3 H 0 1 N N N -8.096 42.590 -3.753 -3.353 -0.301 1.267 HB3 LBY 35 LBY HA HA H 0 1 N N N -9.280 42.471 -5.977 -4.462 0.442 -1.477 HA LBY 36 LBY HXT HXT H 0 1 N Y N -9.351 45.927 -6.938 -6.993 -1.855 -0.400 HXT LBY 37 LBY H H H 0 1 N N N -7.105 41.506 -5.689 -4.648 1.755 1.157 H LBY 38 LBY H2 H2 H 0 1 N Y N -7.248 42.093 -7.206 -3.775 2.298 -0.151 H2 LBY 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LBY O C DOUB N N 1 LBY C OXT SING N N 2 LBY C CA SING N N 3 LBY N CA SING N N 4 LBY CA CB SING N N 5 LBY CB CG SING N N 6 LBY CG CD SING N N 7 LBY C3 CT SING N N 8 LBY O2 CT SING N N 9 LBY O2 CZ SING N N 10 LBY CT C1 SING N N 11 LBY CT C2 SING N N 12 LBY CD CE SING N N 13 LBY CE NZ SING N N 14 LBY CZ NZ SING N N 15 LBY CZ O1 DOUB N N 16 LBY C1 H11 SING N N 17 LBY C1 H12 SING N N 18 LBY C1 H13 SING N N 19 LBY C2 H21 SING N N 20 LBY C2 H22 SING N N 21 LBY C2 H23 SING N N 22 LBY C3 H31 SING N N 23 LBY C3 H32 SING N N 24 LBY C3 H33 SING N N 25 LBY NZ HZ1 SING N N 26 LBY CE HE2 SING N N 27 LBY CE HE3 SING N N 28 LBY CD HD2 SING N N 29 LBY CD HD3 SING N N 30 LBY CG HG2 SING N N 31 LBY CG HG3 SING N N 32 LBY CB HB2 SING N N 33 LBY CB HB3 SING N N 34 LBY CA HA SING N N 35 LBY OXT HXT SING N N 36 LBY N H SING N N 37 LBY N H2 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LBY SMILES ACDLabs 12.01 "O=C(OC(C)(C)C)NCCCCC(C(=O)O)N" LBY InChI InChI 1.03 "InChI=1S/C11H22N2O4/c1-11(2,3)17-10(16)13-7-5-4-6-8(12)9(14)15/h8H,4-7,12H2,1-3H3,(H,13,16)(H,14,15)/t8-/m0/s1" LBY InChIKey InChI 1.03 VVQIIIAZJXTLRE-QMMMGPOBSA-N LBY SMILES_CANONICAL CACTVS 3.370 "CC(C)(C)OC(=O)NCCCC[C@H](N)C(O)=O" LBY SMILES CACTVS 3.370 "CC(C)(C)OC(=O)NCCCC[CH](N)C(O)=O" LBY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)OC(=O)NCCCC[C@@H](C(=O)O)N" LBY SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(C)OC(=O)NCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LBY "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-(tert-butoxycarbonyl)-L-lysine" LBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LBY "Create component" 2005-07-05 PDBJ LBY "Modify descriptor" 2011-06-04 RCSB LBY "Modify model coordinates code" 2012-04-25 PDBJ LBY "Modify atom id" 2012-04-25 PDBJ #