data_LBZ # _chem_comp.id LBZ _chem_comp.name "(2~{S})-2-azanyl-6-benzamido-hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-01-22 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.294 _chem_comp.one_letter_code K _chem_comp.three_letter_code LBZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LBZ C4 C4 C 0 1 Y N N N N N 12.683 1.091 16.418 5.205 1.949 -0.337 C4 LBZ 1 LBZ C5 C5 C 0 1 Y N N N N N 13.999 0.683 16.150 6.400 1.262 -0.230 C5 LBZ 2 LBZ C6 C6 C 0 1 Y N N N N N 14.317 -0.678 16.133 6.403 -0.101 0.007 C6 LBZ 3 LBZ C11 C11 C 0 1 N N N N N N 5.107 -2.771 16.042 -3.365 0.336 0.005 C11 LBZ 4 LBZ C7 C7 C 0 1 N N N N N N 10.923 -2.295 16.917 2.721 -0.823 0.163 C7 LBZ 5 LBZ C8 C8 C 0 1 N N N N N N 8.546 -3.093 16.804 0.285 -0.876 0.192 C8 LBZ 6 LBZ C9 C9 C 0 1 N N N N N N 7.244 -2.524 17.392 -0.878 0.105 0.026 C9 LBZ 7 LBZ C10 C10 C 0 1 N N N N N N 6.379 -1.924 16.320 -2.203 -0.645 0.170 C10 LBZ 8 LBZ N1 N1 N 0 1 N N N N N N 9.536 -2.059 16.568 1.554 -0.157 0.054 N1 LBZ 9 LBZ C3 C3 C 0 1 Y N N N N N 11.683 0.139 16.671 4.006 1.278 -0.209 C3 LBZ 10 LBZ N N N 0 1 N N N Y Y N 3.992 -4.193 17.595 -4.832 -1.374 -0.955 N LBZ 11 LBZ CA CA C 0 1 N N S Y N N 4.180 -2.801 17.241 -4.691 -0.415 0.148 CA LBZ 12 LBZ C C C 0 1 N N N Y N Y 2.864 -2.108 16.916 -5.832 0.569 0.108 C LBZ 13 LBZ O O O 0 1 N N N Y N Y 2.500 -1.170 17.580 -6.460 0.724 -0.912 O LBZ 14 LBZ C1 C1 C 0 1 Y N N N N N 13.319 -1.625 16.390 5.211 -0.784 0.137 C1 LBZ 15 LBZ C2 C2 C 0 1 Y N N N N N 11.998 -1.223 16.657 4.001 -0.098 0.025 C2 LBZ 16 LBZ O1 O1 O 0 1 N N N N N N 11.246 -3.345 17.402 2.720 -2.020 0.376 O1 LBZ 17 LBZ OXT O2 O 0 1 N Y N Y N Y 2.166 -2.579 15.887 -6.150 1.272 1.206 O2 LBZ 18 LBZ H1 H1 H 0 1 N N N N N N 12.439 2.143 16.430 5.209 3.014 -0.517 H1 LBZ 19 LBZ H20 H2 H 0 1 N N N N N N 14.765 1.420 15.957 7.336 1.792 -0.331 H2 LBZ 20 LBZ H3 H3 H 0 1 N N N N N N 15.327 -0.997 15.923 7.340 -0.632 0.089 H3 LBZ 21 LBZ H4 H4 H 0 1 N N N N N N 4.569 -2.336 15.186 -3.300 1.108 0.771 H4 LBZ 22 LBZ H5 H5 H 0 1 N N N N N N 5.410 -3.800 15.800 -3.314 0.797 -0.981 H5 LBZ 23 LBZ H6 H6 H 0 1 N N N N N N 8.317 -3.589 15.849 0.233 -1.337 1.178 H6 LBZ 24 LBZ H7 H7 H 0 1 N N N N N N 8.962 -3.828 17.509 0.220 -1.648 -0.575 H7 LBZ 25 LBZ H8 H8 H 0 1 N N N N N N 7.493 -1.746 18.129 -0.813 0.878 0.793 H8 LBZ 26 LBZ H9 H9 H 0 1 N N N N N N 6.690 -3.335 17.888 -0.826 0.567 -0.960 H9 LBZ 27 LBZ H10 H10 H 0 1 N N N N N N 6.965 -1.852 15.392 -2.254 -1.107 1.156 H10 LBZ 28 LBZ H11 H11 H 0 1 N N N N N N 6.070 -0.917 16.638 -2.268 -1.418 -0.596 H11 LBZ 29 LBZ H12 H12 H 0 1 N N N N N N 9.262 -1.186 16.165 1.554 0.798 -0.115 H12 LBZ 30 LBZ H13 H13 H 0 1 N N N N N N 10.672 0.458 16.876 3.073 1.817 -0.288 H13 LBZ 31 LBZ H H14 H 0 1 N N N Y Y N 3.383 -4.257 18.386 -4.822 -0.903 -1.847 H14 LBZ 32 LBZ H2 H15 H 0 1 N Y N Y Y N 3.587 -4.682 16.822 -4.115 -2.083 -0.912 H15 LBZ 33 LBZ HA H17 H 0 1 N N N Y N N 4.662 -2.269 18.074 -4.705 -0.949 1.098 H17 LBZ 34 LBZ H18 H18 H 0 1 N N N N N N 13.566 -2.676 16.383 5.215 -1.848 0.322 H18 LBZ 35 LBZ HXT H19 H 0 1 N Y N Y N Y 1.373 -2.067 15.781 -6.890 1.891 1.132 H19 LBZ 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LBZ C11 C10 SING N N 1 LBZ C11 CA SING N N 2 LBZ C6 C5 DOUB Y N 3 LBZ C6 C1 SING Y N 4 LBZ C5 C4 SING Y N 5 LBZ C10 C9 SING N N 6 LBZ C1 C2 DOUB Y N 7 LBZ C4 C3 DOUB Y N 8 LBZ N1 C8 SING N N 9 LBZ N1 C7 SING N N 10 LBZ C2 C3 SING Y N 11 LBZ C2 C7 SING N N 12 LBZ C8 C9 SING N N 13 LBZ C CA SING N N 14 LBZ C O DOUB N N 15 LBZ C7 O1 DOUB N N 16 LBZ CA N SING N N 17 LBZ C OXT SING N N 18 LBZ C4 H1 SING N N 19 LBZ C5 H20 SING N N 20 LBZ C6 H3 SING N N 21 LBZ C11 H4 SING N N 22 LBZ C11 H5 SING N N 23 LBZ C8 H6 SING N N 24 LBZ C8 H7 SING N N 25 LBZ C9 H8 SING N N 26 LBZ C9 H9 SING N N 27 LBZ C10 H10 SING N N 28 LBZ C10 H11 SING N N 29 LBZ N1 H12 SING N N 30 LBZ C3 H13 SING N N 31 LBZ N H SING N N 32 LBZ N H2 SING N N 33 LBZ CA HA SING N N 34 LBZ C1 H18 SING N N 35 LBZ OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LBZ InChI InChI 1.03 "InChI=1S/C13H18N2O3/c14-11(13(17)18)8-4-5-9-15-12(16)10-6-2-1-3-7-10/h1-3,6-7,11H,4-5,8-9,14H2,(H,15,16)(H,17,18)/t11-/m0/s1" LBZ InChIKey InChI 1.03 KODLJWKGAKBGOB-NSHDSACASA-N LBZ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)c1ccccc1)C(O)=O" LBZ SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)c1ccccc1)C(O)=O" LBZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)NCCCC[C@@H](C(=O)O)N" LBZ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)NCCCCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id LBZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-benzamido-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LBZ "Create component" 2020-01-22 PDBJ LBZ "Modify internal type" 2020-01-22 PDBJ LBZ "Modify parent residue" 2020-01-23 PDBJ LBZ "Modify component comp_id" 2020-11-09 PDBJ LBZ "Initial release" 2020-11-18 RCSB LBZ "Modify backbone" 2023-11-03 PDBE #