data_LC9
#
_chem_comp.id LC9
_chem_comp.name 1H-indol-3-ylmethanamine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H10 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-06-29
_chem_comp.pdbx_modified_date 2023-06-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 146.189
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LC9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8A91
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LC9 C1 C1 C 0 1 N N N -19.680 -20.623 -5.187 2.532 -0.494 0.510 C1 LC9 1
LC9 C6 C2 C 0 1 Y N N -15.239 -17.599 -5.281 -2.812 -0.543 -0.136 C6 LC9 2
LC9 C2 C3 C 0 1 Y N N -18.722 -19.756 -4.424 1.282 0.312 0.266 C2 LC9 3
LC9 C4 C4 C 0 1 Y N N -16.965 -18.394 -3.873 -0.908 0.909 -0.067 C4 LC9 4
LC9 C9 C5 C 0 1 Y N N -17.555 -19.098 -4.944 -0.083 -0.208 0.159 C9 LC9 5
LC9 C8 C6 C 0 1 Y N N -16.950 -19.033 -6.205 -0.646 -1.483 0.246 C8 LC9 6
LC9 C3 C7 C 0 1 Y N N -18.785 -19.431 -3.098 1.208 1.643 0.107 C3 LC9 7
LC9 C5 C8 C 0 1 Y N N -15.804 -17.638 -4.027 -2.279 0.725 -0.214 C5 LC9 8
LC9 C7 C9 C 0 1 Y N N -15.803 -18.286 -6.356 -1.994 -1.642 0.094 C7 LC9 9
LC9 N1 N1 N 0 1 N N N -20.986 -19.984 -5.377 2.970 -1.110 -0.749 N1 LC9 10
LC9 N2 N2 N 0 1 Y N N -17.737 -18.615 -2.763 -0.092 2.017 -0.094 N2 LC9 11
LC9 H3 H1 H 0 1 N N N -19.824 -21.562 -4.633 3.318 0.160 0.888 H3 LC9 12
LC9 H4 H2 H 0 1 N N N -19.248 -20.842 -6.174 2.324 -1.274 1.243 H4 LC9 13
LC9 H8 H3 H 0 1 N N N -14.338 -17.023 -5.436 -3.877 -0.684 -0.250 H8 LC9 14
LC9 H10 H4 H 0 1 N N N -17.376 -19.560 -7.046 -0.017 -2.342 0.431 H10 LC9 15
LC9 H5 H5 H 0 1 N N N -19.550 -19.768 -2.414 2.051 2.318 0.133 H5 LC9 16
LC9 H7 H6 H 0 1 N N N -15.366 -17.105 -3.196 -2.924 1.573 -0.389 H7 LC9 17
LC9 H9 H7 H 0 1 N N N -15.331 -18.231 -7.326 -2.428 -2.629 0.153 H9 LC9 18
LC9 H1 H8 H 0 1 N N N -21.587 -20.598 -5.888 3.807 -1.657 -0.612 H1 LC9 19
LC9 H2 H9 H 0 1 N N N -21.393 -19.786 -4.485 2.235 -1.671 -1.153 H2 LC9 20
LC9 H6 H11 H 0 1 N N N -17.563 -18.240 -1.852 -0.394 2.928 -0.234 H6 LC9 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LC9 C7 C8 DOUB Y N 1
LC9 C7 C6 SING Y N 2
LC9 C8 C9 SING Y N 3
LC9 N1 C1 SING N N 4
LC9 C6 C5 DOUB Y N 5
LC9 C1 C2 SING N N 6
LC9 C9 C2 SING Y N 7
LC9 C9 C4 DOUB Y N 8
LC9 C2 C3 DOUB Y N 9
LC9 C5 C4 SING Y N 10
LC9 C4 N2 SING Y N 11
LC9 C3 N2 SING Y N 12
LC9 C1 H3 SING N N 13
LC9 C1 H4 SING N N 14
LC9 C6 H8 SING N N 15
LC9 C8 H10 SING N N 16
LC9 C3 H5 SING N N 17
LC9 C5 H7 SING N N 18
LC9 C7 H9 SING N N 19
LC9 N1 H1 SING N N 20
LC9 N1 H2 SING N N 21
LC9 N2 H6 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LC9 InChI InChI 1.06 "InChI=1S/C9H10N2/c10-5-7-6-11-9-4-2-1-3-8(7)9/h1-4,6,11H,5,10H2"
LC9 InChIKey InChI 1.06 JXYGLMATGAAIBU-UHFFFAOYSA-N
LC9 SMILES_CANONICAL CACTVS 3.385 "NCc1c[nH]c2ccccc12"
LC9 SMILES CACTVS 3.385 "NCc1c[nH]c2ccccc12"
LC9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CN"
LC9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CN"
#
_pdbx_chem_comp_identifier.comp_id LC9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "1~{H}-indol-3-ylmethanamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LC9 "Create component" 2022-06-29 PDBE
LC9 "Modify atom id" 2022-06-29 PDBE
LC9 "Modify descriptor" 2022-08-22 RCSB
LC9 "Initial release" 2023-07-05 RCSB
#