data_LCK # _chem_comp.id LCK _chem_comp.name "(Z)-N~6~-(2-carboxy-1-methylethylidene)-L-lysine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H18 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-02-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.261 _chem_comp.one_letter_code K _chem_comp.three_letter_code LCK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3C8W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LCK OXT OXT O 0 1 N Y N Y N Y 22.300 41.693 75.764 5.001 -0.412 -1.751 OXT LCK 1 LCK O2 O2 O 0 1 N N N N N N 30.473 39.999 83.947 -4.261 -0.920 0.992 O2 LCK 2 LCK C4 C4 C 0 1 N N N N N N 29.665 40.736 83.335 -3.891 -1.222 -0.118 C4 LCK 3 LCK O1 O1 O 0 1 N N N N N N 28.994 41.639 83.888 -3.982 -2.496 -0.531 O1 LCK 4 LCK C3 C3 C 0 1 N N N N N N 29.497 40.540 81.845 -3.328 -0.170 -1.037 C3 LCK 5 LCK C2 C2 C 0 1 N N N N N N 29.744 41.853 81.146 -3.337 1.165 -0.337 C2 LCK 6 LCK C1 C1 C 0 1 N N N N N N 30.767 42.847 81.640 -4.484 2.119 -0.549 C1 LCK 7 LCK NZ NZ N 0 1 N N N N N N 29.064 42.103 80.122 -2.370 1.488 0.436 NZ LCK 8 LCK CE CE C 0 1 N N N N N N 28.064 41.223 79.561 -1.321 0.512 0.744 CE LCK 9 LCK CD CD C 0 1 N N N N N N 27.377 41.945 78.397 0.010 0.994 0.164 CD LCK 10 LCK CG CG C 0 1 N N N N N N 26.430 41.015 77.666 1.105 -0.025 0.486 CG LCK 11 LCK CB CB C 0 1 N N N N N N 25.524 41.735 76.677 2.436 0.457 -0.095 CB LCK 12 LCK CA CA C 0 1 N N S Y N N 24.524 40.810 75.943 3.531 -0.562 0.228 CA LCK 13 LCK N N N 0 1 N N N Y Y N 25.276 39.911 75.058 3.738 -0.616 1.681 N LCK 14 LCK C C C 0 1 N N N Y N Y 23.514 41.695 75.233 4.814 -0.150 -0.447 C LCK 15 LCK O O O 0 1 N N N Y N Y 23.822 42.334 74.242 5.675 0.415 0.185 O LCK 16 LCK H3 H3 H 0 1 N N N N N N 30.218 39.790 81.487 -2.305 -0.432 -1.307 H3 LCK 17 LCK H3A H3A H 0 1 N N N N N N 28.477 40.191 81.629 -3.938 -0.111 -1.939 H3A LCK 18 LCK H1 H1 H 0 1 N N N N N N 31.467 43.089 80.826 -5.257 1.929 0.196 H1 LCK 19 LCK H1A H1A H 0 1 N N N N N N 30.257 43.764 81.970 -4.127 3.144 -0.448 H1A LCK 20 LCK H1B H1B H 0 1 N N N N N N 31.323 42.412 82.484 -4.898 1.975 -1.547 H1B LCK 21 LCK HE HE H 0 1 N N N N N N 28.541 40.301 79.197 -1.230 0.407 1.826 HE LCK 22 LCK HEA HEA H 0 1 N N N N N N 27.323 40.958 80.329 -1.582 -0.451 0.306 HEA LCK 23 LCK HD HD H 0 1 N N N N N N 26.806 42.798 78.792 -0.082 1.099 -0.917 HD LCK 24 LCK HDA HDA H 0 1 N N N N N N 28.148 42.288 77.691 0.270 1.958 0.602 HDA LCK 25 LCK HG HG H 0 1 N N N N N N 27.031 40.280 77.110 1.197 -0.130 1.567 HG LCK 26 LCK HGA HGA H 0 1 N N N N N N 25.783 40.545 78.421 0.845 -0.988 0.048 HGA LCK 27 LCK HB HB H 0 1 N N N N N N 24.944 42.486 77.234 2.344 0.562 -1.176 HB LCK 28 LCK HBA HBA H 0 1 N N N N N N 26.177 42.173 75.908 2.696 1.421 0.343 HBA LCK 29 LCK HA HA H 0 1 N N N Y N N 23.959 40.159 76.626 3.230 -1.545 -0.133 HA LCK 30 LCK H HN H 0 1 N N N Y Y N 25.447 40.368 74.185 4.018 0.285 2.040 HN LCK 31 LCK H2 HNA H 0 1 N Y N Y Y N 26.148 39.674 75.486 2.911 -0.951 2.151 HNA LCK 32 LCK HXT H17 H 0 1 N Y N Y N Y 21.730 42.258 75.255 5.840 -0.129 -2.140 H17 LCK 33 LCK H18 H18 H 0 1 N N N N N N 29.199 41.664 84.815 -4.349 -3.136 0.094 H18 LCK 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LCK OXT C SING N N 1 LCK O2 C4 DOUB N N 2 LCK C4 O1 SING N N 3 LCK C4 C3 SING N N 4 LCK C3 C2 SING N N 5 LCK C3 H3 SING N N 6 LCK C3 H3A SING N N 7 LCK C2 C1 SING N N 8 LCK C2 NZ DOUB N N 9 LCK C1 H1 SING N N 10 LCK C1 H1A SING N N 11 LCK C1 H1B SING N N 12 LCK NZ CE SING N N 13 LCK CE CD SING N N 14 LCK CE HE SING N N 15 LCK CE HEA SING N N 16 LCK CD CG SING N N 17 LCK CD HD SING N N 18 LCK CD HDA SING N N 19 LCK CG CB SING N N 20 LCK CG HG SING N N 21 LCK CG HGA SING N N 22 LCK CB CA SING N N 23 LCK CB HB SING N N 24 LCK CB HBA SING N N 25 LCK CA N SING N N 26 LCK CA C SING N N 27 LCK CA HA SING N N 28 LCK N H SING N N 29 LCK N H2 SING N N 30 LCK C O DOUB N N 31 LCK OXT HXT SING N N 32 LCK O1 H18 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LCK SMILES ACDLabs 10.04 "O=C(O)CC(=N/CCCCC(N)C(=O)O)\C" LCK SMILES_CANONICAL CACTVS 3.341 "CC(CC(O)=O)=NCCCC[C@H](N)C(O)=O" LCK SMILES CACTVS 3.341 "CC(CC(O)=O)=NCCCC[CH](N)C(O)=O" LCK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C/C(=N/CCCC[C@@H](C(=O)O)N)/CC(=O)O" LCK SMILES "OpenEye OEToolkits" 1.5.0 "CC(=NCCCCC(C(=O)O)N)CC(=O)O" LCK InChI InChI 1.03 "InChI=1S/C10H18N2O4/c1-7(6-9(13)14)12-5-3-2-4-8(11)10(15)16/h8H,2-6,11H2,1H3,(H,13,14)(H,15,16)/b12-7-/t8-/m0/s1" LCK InChIKey InChI 1.03 PCARXDDZXPRYII-VQLBTBKJSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LCK "SYSTEMATIC NAME" ACDLabs 10.04 "(Z)-N~6~-(2-carboxy-1-methylethylidene)-L-lysine" LCK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-[(4-hydroxy-4-oxo-butan-2-ylidene)amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LCK "Create component" 2008-02-15 RCSB LCK "Modify descriptor" 2011-06-04 RCSB LCK "Modify backbone" 2023-11-03 PDBE #