data_LCN
#
_chem_comp.id LCN
_chem_comp.name "1,5-anhydro-D-arabino-hex-1-enitol"
_chem_comp.type D-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C6 H10 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-05-26
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 162.141
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LCN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3S28
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LCN C1 C1 C 0 1 N N N -136.994 -122.080 55.582 0.622 1.681 0.166 C1 LCN 1
LCN C2 C2 C 0 1 N N N -137.469 -121.929 56.867 1.555 0.805 -0.112 C2 LCN 2
LCN O2 O2 O 0 1 N N N -137.803 -123.047 57.610 2.843 1.230 -0.213 O2 LCN 3
LCN C3 C3 C 0 1 N N S -137.734 -120.537 57.397 1.256 -0.654 -0.324 C3 LCN 4
LCN O3 O3 O 0 1 N N N -137.580 -120.527 58.778 2.246 -1.444 0.337 O3 LCN 5
LCN C4 C4 C 0 1 N N S -136.817 -119.545 56.746 -0.126 -0.980 0.253 C4 LCN 6
LCN O4 O4 O 0 1 N N N -137.182 -118.283 57.135 -0.551 -2.264 -0.209 O4 LCN 7
LCN C5 C5 C 0 1 N N R -136.904 -119.665 55.248 -1.112 0.095 -0.227 C5 LCN 8
LCN O5 O5 O 0 1 N N N -136.633 -120.963 54.844 -0.686 1.356 0.301 O5 LCN 9
LCN C6 C6 C 0 1 N N N -135.961 -118.696 54.571 -2.517 -0.229 0.282 C6 LCN 10
LCN O6 O6 O 0 1 N N N -134.675 -118.843 55.067 -3.449 0.707 -0.262 O6 LCN 11
LCN H1 H1 H 0 1 N N N -136.903 -123.066 55.151 0.910 2.714 0.298 H1 LCN 12
LCN HO2 HO2 H 0 1 N Y N -138.112 -122.778 58.467 2.957 2.179 -0.065 HO2 LCN 13
LCN H3 H3 H 0 1 N N N -138.769 -120.267 57.139 1.266 -0.876 -1.391 H3 LCN 14
LCN HO3 HO3 H 0 1 N Y N -138.170 -121.162 59.167 3.147 -1.290 0.022 HO3 LCN 15
LCN H4 H4 H 0 1 N N N -135.784 -119.762 57.057 -0.080 -0.978 1.342 H4 LCN 16
LCN HO4 HO4 H 0 1 N Y N -137.125 -118.214 58.081 0.039 -2.988 0.043 HO4 LCN 17
LCN H5 H5 H 0 1 N N N -137.928 -119.397 54.949 -1.115 0.130 -1.317 H5 LCN 18
LCN H61 H61 H 0 1 N N N -136.305 -117.668 54.756 -2.793 -1.238 -0.027 H61 LCN 19
LCN H62 H62 H 0 1 N N N -135.956 -118.892 53.489 -2.533 -0.166 1.371 H62 LCN 20
LCN HO6 HO6 H 0 1 N Y N -134.095 -118.228 54.633 -4.363 0.562 0.019 HO6 LCN 21
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LCN C6 O6 SING N N 1
LCN C6 C5 SING N N 2
LCN O5 C5 SING N N 3
LCN O5 C1 SING N N 4
LCN C5 C4 SING N N 5
LCN C1 C2 DOUB N N 6
LCN C4 O4 SING N N 7
LCN C4 C3 SING N N 8
LCN C2 C3 SING N N 9
LCN C2 O2 SING N N 10
LCN C3 O3 SING N N 11
LCN C1 H1 SING N N 12
LCN O2 HO2 SING N N 13
LCN C3 H3 SING N N 14
LCN O3 HO3 SING N N 15
LCN C4 H4 SING N N 16
LCN O4 HO4 SING N N 17
LCN C5 H5 SING N N 18
LCN C6 H61 SING N N 19
LCN C6 H62 SING N N 20
LCN O6 HO6 SING N N 21
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LCN InChI InChI 1.03 "InChI=1S/C6H10O5/c7-1-4-6(10)5(9)3(8)2-11-4/h2,4-10H,1H2/t4-,5-,6-/m1/s1"
LCN InChIKey InChI 1.03 CXKKSSKKIOZUNR-HSUXUTPPSA-N
LCN SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1OC=C(O)[C@@H](O)[C@@H]1O"
LCN SMILES CACTVS 3.385 "OC[CH]1OC=C(O)[CH](O)[CH]1O"
LCN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C([C@H]([C@@H]([C@H](O1)CO)O)O)O"
LCN SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(C(C(C(O1)CO)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id LCN
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S})-2-(hydroxymethyl)-3,4-dihydro-2~{H}-pyran-3,4,5-triol"
# #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LCN "CARBOHYDRATE ISOMER" D PDB ?
LCN "CARBOHYDRATE RING" dihydropyran PDB ?
LCN "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LCN "Create component" 2011-05-26 RCSB
LCN "Modify descriptor" 2011-06-04 RCSB
LCN "Other modification" 2020-04-11 RCSB
LCN "Other modification" 2020-07-03 RCSB
##