data_LCY # _chem_comp.id LCY _chem_comp.name 1-methylpyrrolidine-2,5-dione _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LCY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3A2G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LCY C1 C1 C 0 1 N N N N N N 7.203 18.681 4.116 0.771 -1.607 -0.000 C1 LCY 1 LCY C2 C2 C 0 1 N N N N N N 6.870 18.786 5.593 -0.771 -1.607 -0.000 C2 LCY 2 LCY C3 C3 C 0 1 N N N N N N 8.178 18.439 6.259 -1.126 -0.136 -0.000 C3 LCY 3 LCY O2 O2 O 0 1 N N N N N N 8.344 18.529 7.476 -2.251 0.315 0.000 O2 LCY 4 LCY N1 N1 N 0 1 N N N N N N 9.080 18.044 5.361 -0.000 0.589 0.000 N1 LCY 5 LCY C4 C4 C 0 1 N N N N N N 8.538 18.008 4.145 1.126 -0.136 -0.000 C4 LCY 6 LCY O1 O1 O 0 1 N N N N N N 9.028 17.493 3.152 2.251 0.315 0.000 O1 LCY 7 LCY C5 C5 C 0 1 N N N N N N 10.471 17.720 5.666 -0.000 2.054 -0.000 C5 LCY 8 LCY H1 H1 H 0 1 N N N N N N 6.455 18.091 3.565 1.155 -2.094 0.896 H1 LCY 9 LCY H1A H1A H 0 1 N N N N N N 7.210 19.650 3.596 1.155 -2.094 -0.897 H1A LCY 10 LCY H2 H2 H 0 1 N N N N N N 6.531 19.797 5.863 -1.155 -2.094 -0.897 H2 LCY 11 LCY H2A H2A H 0 1 N N N N N N 6.043 18.128 5.897 -1.155 -2.094 0.896 H2A LCY 12 LCY H5 H5 H 0 1 N N N N N N 11.043 17.639 4.730 -0.000 2.417 1.027 H5 LCY 13 LCY H5A H5A H 0 1 N N N N N N 10.904 18.515 6.292 0.890 2.417 -0.514 H5A LCY 14 LCY H5B H5B H 0 1 N N N N N N 10.514 16.763 6.206 -0.890 2.417 -0.514 H5B LCY 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LCY C1 C2 SING N N 1 LCY C1 C4 SING N N 2 LCY C2 C3 SING N N 3 LCY C3 O2 DOUB N N 4 LCY C3 N1 SING N N 5 LCY N1 C4 SING N N 6 LCY N1 C5 SING N N 7 LCY C4 O1 DOUB N N 8 LCY C1 H1 SING N N 9 LCY C1 H1A SING N N 10 LCY C2 H2 SING N N 11 LCY C2 H2A SING N N 12 LCY C5 H5 SING N N 13 LCY C5 H5A SING N N 14 LCY C5 H5B SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LCY SMILES ACDLabs 10.04 "O=C1N(C(=O)CC1)C" LCY SMILES_CANONICAL CACTVS 3.341 "CN1C(=O)CCC1=O" LCY SMILES CACTVS 3.341 "CN1C(=O)CCC1=O" LCY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN1C(=O)CCC1=O" LCY SMILES "OpenEye OEToolkits" 1.5.0 "CN1C(=O)CCC1=O" LCY InChI InChI 1.03 "InChI=1S/C5H7NO2/c1-6-4(7)2-3-5(6)8/h2-3H2,1H3" LCY InChIKey InChI 1.03 KYEACNNYFNZCST-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LCY "SYSTEMATIC NAME" ACDLabs 10.04 1-methylpyrrolidine-2,5-dione LCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methylpyrrolidine-2,5-dione # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LCY "Create component" 2009-05-22 PDBJ LCY "Modify descriptor" 2011-06-04 RCSB LCY "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 LCY CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C1 SG ? ? 2 LCY CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 SG ? ? #