data_LDK # _chem_comp.id LDK _chem_comp.name "(2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N2 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-05 _chem_comp.pdbx_modified_date 2020-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SGP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LDK OE1 O1 O 0 1 N N N 23.918 49.279 42.613 5.421 -0.359 0.389 OE1 LDK 1 LDK CD C1 C 0 1 N N N 24.126 48.134 43.089 4.635 -1.095 -0.160 CD LDK 2 LDK OE2 O2 O 0 1 N N N 25.105 47.810 43.809 5.071 -2.215 -0.758 OE2 LDK 3 LDK CG C2 C 0 1 N N N 23.109 47.019 42.754 3.166 -0.761 -0.166 CG LDK 4 LDK CB C3 C 0 1 N N N 21.668 47.486 43.017 2.939 0.553 0.585 CB LDK 5 LDK CA C4 C 0 1 N N S 20.814 46.343 43.602 1.464 0.946 0.491 CA LDK 6 LDK C C5 C 0 1 N N N 20.583 46.625 45.115 1.213 2.163 1.343 C LDK 7 LDK OXT O3 O 0 1 N N N 21.223 45.900 45.899 1.071 2.035 2.672 OXT LDK 8 LDK O O4 O 0 1 N N N 19.839 47.563 45.462 1.139 3.255 0.830 O LDK 9 LDK N N1 N 0 1 N N N 19.574 46.180 42.798 1.126 1.247 -0.902 N LDK 10 LDK SAW S1 S 0 1 N N N 18.430 44.925 43.130 -0.448 1.159 -1.410 SAW LDK 11 LDK OAE O5 O 0 1 N N N 18.455 44.700 44.631 -1.207 1.949 -0.504 OAE LDK 12 LDK OAF O6 O 0 1 N N N 18.610 43.600 42.374 -0.430 1.386 -2.812 OAF LDK 13 LDK NAP N2 N 0 1 N N N 16.940 45.444 42.525 -0.946 -0.406 -1.196 NAP LDK 14 LDK CAV C6 C 0 1 N N S 16.289 44.719 41.402 -1.169 -0.925 0.156 CAV LDK 15 LDK CAT C7 C 0 1 N N N 17.169 44.699 40.144 -0.294 -2.130 0.382 CAT LDK 16 LDK OAJ O7 O 0 1 N N N 18.105 45.538 40.062 0.134 -2.426 1.620 OAJ LDK 17 LDK OAD O8 O 0 1 N N N 16.836 43.885 39.250 0.024 -2.830 -0.550 OAD LDK 18 LDK CAN C8 C 0 1 N N N 14.945 45.431 41.040 -2.638 -1.325 0.313 CAN LDK 19 LDK CAL C9 C 0 1 N N N 15.259 46.873 40.571 -3.520 -0.079 0.207 CAL LDK 20 LDK CAR C10 C 0 1 N N N 13.979 47.588 40.089 -4.966 -0.473 0.361 CAR LDK 21 LDK OAH O9 O 0 1 N N N 13.121 46.966 39.423 -5.261 -1.631 0.537 OAH LDK 22 LDK OAB O10 O 0 1 N N N 13.896 48.783 40.344 -5.927 0.463 0.302 OAB LDK 23 LDK H1 H1 H 0 1 N N N 25.666 48.565 43.939 6.022 -2.389 -0.725 H1 LDK 24 LDK H2 H2 H 0 1 N N N 23.321 46.139 43.380 2.822 -0.656 -1.194 H2 LDK 25 LDK H3 H3 H 0 1 N N N 23.210 46.747 41.693 2.609 -1.560 0.324 H3 LDK 26 LDK H4 H4 H 0 1 N N N 21.686 48.323 43.731 3.216 0.426 1.632 H4 LDK 27 LDK H5 H5 H 0 1 N N N 21.220 47.821 42.070 3.553 1.337 0.140 H5 LDK 28 LDK H6 H6 H 0 1 N N N 21.400 45.416 43.525 0.845 0.121 0.845 H6 LDK 29 LDK H7 H7 H 0 1 N N N 21.055 46.174 46.793 0.912 2.844 3.177 H7 LDK 30 LDK H8 H8 H 0 1 N N N 19.868 46.048 41.851 1.824 1.497 -1.527 H8 LDK 31 LDK H9 H9 H 0 1 N N N 17.067 46.388 42.221 -1.090 -0.979 -1.965 H9 LDK 32 LDK H10 H10 H 0 1 N N N 16.070 43.684 41.705 -0.923 -0.154 0.887 H10 LDK 33 LDK H11 H11 H 0 1 N N N 18.526 45.462 39.214 0.693 -3.209 1.716 H11 LDK 34 LDK H12 H12 H 0 1 N N N 14.293 45.463 41.925 -2.908 -2.030 -0.474 H12 LDK 35 LDK H13 H13 H 0 1 N N N 14.440 44.881 40.232 -2.785 -1.792 1.286 H13 LDK 36 LDK H14 H14 H 0 1 N N N 15.982 46.833 39.743 -3.250 0.626 0.993 H14 LDK 37 LDK H15 H15 H 0 1 N N N 15.693 47.438 41.409 -3.373 0.389 -0.767 H15 LDK 38 LDK H16 H16 H 0 1 N N N 13.100 49.134 39.962 -6.840 0.162 0.406 H16 LDK 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LDK OAD CAT DOUB N N 1 LDK OAH CAR DOUB N N 2 LDK OAJ CAT SING N N 3 LDK CAR OAB SING N N 4 LDK CAR CAL SING N N 5 LDK CAT CAV SING N N 6 LDK CAL CAN SING N N 7 LDK CAN CAV SING N N 8 LDK CAV NAP SING N N 9 LDK OAF SAW DOUB N N 10 LDK NAP SAW SING N N 11 LDK OE1 CD DOUB N N 12 LDK CG CB SING N N 13 LDK CG CD SING N N 14 LDK N SAW SING N N 15 LDK N CA SING N N 16 LDK CB CA SING N N 17 LDK CD OE2 SING N N 18 LDK SAW OAE DOUB N N 19 LDK CA C SING N N 20 LDK C O DOUB N N 21 LDK C OXT SING N N 22 LDK OE2 H1 SING N N 23 LDK CG H2 SING N N 24 LDK CG H3 SING N N 25 LDK CB H4 SING N N 26 LDK CB H5 SING N N 27 LDK CA H6 SING N N 28 LDK OXT H7 SING N N 29 LDK N H8 SING N N 30 LDK NAP H9 SING N N 31 LDK CAV H10 SING N N 32 LDK OAJ H11 SING N N 33 LDK CAN H12 SING N N 34 LDK CAN H13 SING N N 35 LDK CAL H14 SING N N 36 LDK CAL H15 SING N N 37 LDK OAB H16 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LDK InChI InChI 1.03 "InChI=1S/C10H16N2O10S/c13-7(14)3-1-5(9(17)18)11-23(21,22)12-6(10(19)20)2-4-8(15)16/h5-6,11-12H,1-4H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)/t5-,6-/m0/s1" LDK InChIKey InChI 1.03 VLYWUCXOEFVQPS-WDSKDSINSA-N LDK SMILES_CANONICAL CACTVS 3.385 "OC(=O)CC[C@H](N[S](=O)(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O" LDK SMILES CACTVS 3.385 "OC(=O)CC[CH](N[S](=O)(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O" LDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)[C@@H](C(=O)O)NS(=O)(=O)N[C@@H](CCC(=O)O)C(=O)O" LDK SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C(C(=O)O)NS(=O)(=O)NC(CCC(=O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id LDK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LDK "Create component" 2019-08-05 PDBE LDK "Initial release" 2020-08-26 RCSB ##