data_LDL # _chem_comp.id LDL _chem_comp.name "4-[[4-[4-(imidazolidin-2-ylideneamino)phenyl]-1,2,3-triazol-1-yl]methyl]benzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-01 _chem_comp.pdbx_modified_date 2023-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LDL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A8Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LDL N1 N1 N 0 1 Y N N -11.450 -9.124 -4.464 1.293 1.795 0.745 N1 LDL 1 LDL N3 N2 N 0 1 Y N N -12.367 -9.620 -6.352 0.157 1.970 -1.029 N3 LDL 2 LDL C4 C1 C 0 1 Y N N -7.785 -11.278 -4.412 5.550 0.924 -0.255 C4 LDL 3 LDL C5 C2 C 0 1 Y N N -8.787 -10.332 -4.562 4.504 1.651 0.275 C5 LDL 4 LDL C6 C3 C 0 1 Y N N -9.244 -9.582 -3.491 3.572 1.035 1.091 C6 LDL 5 LDL C7 C4 C 0 1 N N N -10.364 -8.569 -3.643 2.432 1.836 1.665 C7 LDL 6 LDL C8 C5 C 0 1 Y N N -13.159 -10.114 -5.363 -0.692 1.518 -0.090 C8 LDL 7 LDL C10 C6 C 0 1 Y N N -14.610 -11.397 -6.931 -2.734 1.372 -1.513 C10 LDL 8 LDL C13 C7 C 0 1 Y N N -16.644 -11.486 -5.061 -4.218 0.448 0.651 C13 LDL 9 LDL C15 C8 C 0 1 N N N -18.760 -12.963 -7.673 -6.654 -0.763 -0.252 C15 LDL 10 LDL C17 C9 C 0 1 N N N -19.598 -12.631 -9.781 -6.792 -2.782 0.861 C17 LDL 11 LDL C1 C10 C 0 1 Y N N -7.160 -11.480 -3.186 5.666 -0.437 0.035 C1 LDL 12 LDL C2 C11 C 0 1 Y N N -7.621 -10.731 -2.110 4.725 -1.051 0.863 C2 LDL 13 LDL C3 C12 C 0 1 Y N N -8.651 -9.810 -2.261 3.681 -0.313 1.381 C3 LDL 14 LDL N2 N3 N 0 1 Y N N -11.319 -9.035 -5.807 1.318 2.124 -0.498 N2 LDL 15 LDL C9 C13 C 0 1 Y N N -14.406 -10.816 -5.678 -2.132 1.204 -0.267 C9 LDL 16 LDL C11 C14 C 0 1 Y N N -15.795 -12.046 -7.236 -4.070 1.086 -1.678 C11 LDL 17 LDL C12 C15 C 0 1 Y N N -15.441 -10.867 -4.750 -2.882 0.740 0.814 C12 LDL 18 LDL C14 C16 C 0 1 Y N N -16.822 -12.097 -6.295 -4.824 0.626 -0.595 C14 LDL 19 LDL N4 N4 N 0 1 N N N -18.059 -12.760 -6.518 -6.153 0.341 -0.757 N4 LDL 20 LDL N5 N5 N 0 1 N N N -19.825 -13.756 -7.749 -7.967 -1.119 -0.370 N5 LDL 21 LDL C16 C17 C 0 1 N N N -20.608 -13.390 -8.922 -8.178 -2.405 0.309 C16 LDL 22 LDL N6 N6 N 0 1 N N N -18.509 -12.406 -8.840 -5.916 -1.679 0.441 N6 LDL 23 LDL C18 C18 C 0 1 Y N N -12.575 -9.800 -4.159 0.038 1.397 1.057 C18 LDL 24 LDL C19 C19 C 0 1 N N N -6.050 -12.474 -3.062 6.781 -1.224 -0.534 C19 LDL 25 LDL N7 N7 N 0 1 N N N -5.079 -12.224 -2.174 6.891 -2.537 -0.253 N7 LDL 26 LDL N8 N8 N 0 1 N N N -3.973 -13.109 -2.048 7.921 -3.265 -0.778 N8 LDL 27 LDL O1 O1 O 0 1 N N N -5.951 -13.462 -3.786 7.598 -0.686 -1.255 O1 LDL 28 LDL H1 H1 H 0 1 N N N -7.484 -11.870 -5.264 6.274 1.405 -0.895 H1 LDL 29 LDL H2 H2 H 0 1 N N N -9.222 -10.176 -5.538 4.413 2.704 0.052 H2 LDL 30 LDL H3 H3 H 0 1 N N N -9.970 -7.663 -4.127 2.748 2.870 1.805 H3 LDL 31 LDL H4 H4 H 0 1 N N N -10.757 -8.311 -2.648 2.138 1.413 2.626 H4 LDL 32 LDL H5 H5 H 0 1 N N N -13.830 -11.339 -7.676 -2.152 1.732 -2.349 H5 LDL 33 LDL H6 H6 H 0 1 N N N -17.447 -11.492 -4.338 -4.798 0.088 1.488 H6 LDL 34 LDL H7 H7 H 0 1 N N N -19.267 -13.236 -10.638 -6.822 -2.855 1.948 H7 LDL 35 LDL H8 H8 H 0 1 N N N -20.016 -11.680 -10.143 -6.451 -3.721 0.425 H8 LDL 36 LDL H9 H9 H 0 1 N N N -7.170 -10.867 -1.138 4.810 -2.103 1.091 H9 LDL 37 LDL H10 H10 H 0 1 N N N -8.997 -9.259 -1.399 2.950 -0.788 2.019 H10 LDL 38 LDL H11 H11 H 0 1 N N N -15.923 -12.512 -8.202 -4.536 1.217 -2.643 H11 LDL 39 LDL H12 H12 H 0 1 N N N -15.307 -10.420 -3.776 -2.413 0.602 1.777 H12 LDL 40 LDL H13 H13 H 0 1 N N N -20.052 -14.486 -7.105 -8.650 -0.606 -0.829 H13 LDL 41 LDL H14 H14 H 0 1 N N N -21.457 -12.746 -8.647 -8.524 -3.160 -0.397 H14 LDL 42 LDL H15 H15 H 0 1 N N N -20.980 -14.284 -9.445 -8.893 -2.288 1.123 H15 LDL 43 LDL H16 H16 H 0 1 N N N -17.677 -11.894 -9.053 -4.968 -1.610 0.631 H16 LDL 44 LDL H17 H17 H 0 1 N N N -12.942 -10.044 -3.173 -0.314 1.054 2.019 H17 LDL 45 LDL H18 H18 H 0 1 N N N -5.132 -11.410 -1.596 6.238 -2.966 0.323 H18 LDL 46 LDL H19 H19 H 0 1 N N N -3.351 -12.768 -1.343 8.811 -2.856 -0.537 H19 LDL 47 LDL H20 H20 H 0 1 N N N -4.301 -14.018 -1.792 7.872 -4.228 -0.481 H20 LDL 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LDL C17 C16 SING N N 1 LDL C17 N6 SING N N 2 LDL C16 N5 SING N N 3 LDL N6 C15 SING N N 4 LDL N5 C15 SING N N 5 LDL C15 N4 DOUB N N 6 LDL C11 C10 DOUB Y N 7 LDL C11 C14 SING Y N 8 LDL C10 C9 SING Y N 9 LDL N4 C14 SING N N 10 LDL N3 N2 DOUB Y N 11 LDL N3 C8 SING Y N 12 LDL C14 C13 DOUB Y N 13 LDL N2 N1 SING Y N 14 LDL C9 C8 SING N N 15 LDL C9 C12 DOUB Y N 16 LDL C8 C18 DOUB Y N 17 LDL C13 C12 SING Y N 18 LDL C5 C4 DOUB Y N 19 LDL C5 C6 SING Y N 20 LDL N1 C18 SING Y N 21 LDL N1 C7 SING N N 22 LDL C4 C1 SING Y N 23 LDL O1 C19 DOUB N N 24 LDL C7 C6 SING N N 25 LDL C6 C3 DOUB Y N 26 LDL C1 C19 SING N N 27 LDL C1 C2 DOUB Y N 28 LDL C19 N7 SING N N 29 LDL C3 C2 SING Y N 30 LDL N7 N8 SING N N 31 LDL C4 H1 SING N N 32 LDL C5 H2 SING N N 33 LDL C7 H3 SING N N 34 LDL C7 H4 SING N N 35 LDL C10 H5 SING N N 36 LDL C13 H6 SING N N 37 LDL C17 H7 SING N N 38 LDL C17 H8 SING N N 39 LDL C2 H9 SING N N 40 LDL C3 H10 SING N N 41 LDL C11 H11 SING N N 42 LDL C12 H12 SING N N 43 LDL N5 H13 SING N N 44 LDL C16 H14 SING N N 45 LDL C16 H15 SING N N 46 LDL N6 H16 SING N N 47 LDL C18 H17 SING N N 48 LDL N7 H18 SING N N 49 LDL N8 H19 SING N N 50 LDL N8 H20 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LDL InChI InChI 1.06 "InChI=1S/C19H20N8O/c20-24-18(28)15-3-1-13(2-4-15)11-27-12-17(25-26-27)14-5-7-16(8-6-14)23-19-21-9-10-22-19/h1-8,12H,9-11,20H2,(H,24,28)(H2,21,22,23)" LDL InChIKey InChI 1.06 FNWSHZHKFUFPQJ-UHFFFAOYSA-N LDL SMILES_CANONICAL CACTVS 3.385 "NNC(=O)c1ccc(Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)cc1" LDL SMILES CACTVS 3.385 "NNC(=O)c1ccc(Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)cc1" LDL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)C(=O)NN" LDL SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cn2cc(nn2)c3ccc(cc3)N=C4NCCN4)C(=O)NN" # _pdbx_chem_comp_identifier.comp_id LDL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[4-[4-(imidazolidin-2-ylideneamino)phenyl]-1,2,3-triazol-1-yl]methyl]benzohydrazide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LDL "Create component" 2022-07-01 PDBE LDL "Modify descriptor" 2022-08-22 RCSB LDL "Initial release" 2023-01-25 RCSB #