data_LE1 # _chem_comp.id LE1 _chem_comp.name 3-sulfanyl-L-valine _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O2 S" _chem_comp.mon_nstd_parent_comp_id VAL _chem_comp.pdbx_synonyms "L-LE1ICILLAMINE; L-Penicillamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 149.211 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LE1 O O O 0 1 N N N Y N Y 12.964 -6.029 9.096 2.327 -0.737 0.583 O LE1 1 LE1 C C C 0 1 N N N Y N Y 11.736 -6.156 9.121 1.707 -0.024 -0.170 C LE1 2 LE1 CA CA C 0 1 N N R Y N N 10.865 -4.964 8.835 0.326 -0.422 -0.620 CA LE1 3 LE1 N N N 0 1 N N N Y Y N 9.630 -5.346 8.129 0.145 -1.867 -0.424 N LE1 4 LE1 CB CB C 0 1 N N N N N N 10.581 -4.166 10.121 -0.717 0.338 0.201 CB LE1 5 LE1 C9 C9 C 0 1 N N N N N N 11.873 -3.591 10.657 -0.546 -0.001 1.683 C9 LE1 6 LE1 C8 C8 C 0 1 N N N N N N 9.913 -5.026 11.171 -0.529 1.843 -0.003 C8 LE1 7 LE1 SG SG S 0 1 N N N N N N 9.476 -2.825 9.724 -2.381 -0.142 -0.340 SG LE1 8 LE1 OXT OXT O 0 1 N Y N Y N Y 11.148 -7.425 9.420 2.248 1.127 -0.602 O2 LE1 9 LE1 HA HA H 0 1 N N N Y N N 11.418 -4.299 8.155 0.204 -0.181 -1.676 HA LE1 10 LE1 H HN H 0 1 N N N Y Y N 8.882 -5.433 8.787 0.780 -2.393 -1.005 HN LE1 11 LE1 H2 HNA H 0 1 N Y N Y Y N 9.401 -4.644 7.455 0.253 -2.116 0.548 HNA LE1 12 LE1 H9 H9 H 0 1 N N N N N N 12.584 -3.451 9.829 0.454 0.288 2.009 H9 LE1 13 LE1 H9A H9A H 0 1 N N N N N N 11.672 -2.621 11.135 -1.289 0.541 2.268 H9A LE1 14 LE1 H9B H9B H 0 1 N N N N N N 12.303 -4.283 11.397 -0.680 -1.072 1.829 H9B LE1 15 LE1 H8 H8 H 0 1 N N N N N N 9.751 -6.037 10.769 -0.651 2.084 -1.059 H8 LE1 16 LE1 H8A H8A H 0 1 N N N N N N 10.557 -5.084 12.061 -1.272 2.385 0.582 H8A LE1 17 LE1 H8B H8B H 0 1 N N N N N N 8.945 -4.582 11.447 0.470 2.131 0.322 H8B LE1 18 LE1 HSG HSG H 0 1 N N N N N N 9.207 -2.151 10.802 -3.181 0.592 0.454 HSG LE1 19 LE1 HXT HXT H 0 1 N Y N Y N Y 11.834 -8.064 9.575 3.135 1.342 -0.282 H11 LE1 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LE1 O C DOUB N N 1 LE1 C OXT SING N N 2 LE1 CA C SING N N 3 LE1 CA CB SING N N 4 LE1 CA HA SING N N 5 LE1 N CA SING N N 6 LE1 N H SING N N 7 LE1 N H2 SING N N 8 LE1 CB C9 SING N N 9 LE1 CB C8 SING N N 10 LE1 C9 H9 SING N N 11 LE1 C9 H9A SING N N 12 LE1 C9 H9B SING N N 13 LE1 C8 H8 SING N N 14 LE1 C8 H8A SING N N 15 LE1 C8 H8B SING N N 16 LE1 SG CB SING N N 17 LE1 SG HSG SING N N 18 LE1 OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LE1 SMILES ACDLabs 10.04 "O=C(O)C(N)C(S)(C)C" LE1 SMILES_CANONICAL CACTVS 3.341 "CC(C)(S)[C@H](N)C(O)=O" LE1 SMILES CACTVS 3.341 "CC(C)(S)[CH](N)C(O)=O" LE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)([C@@H](C(=O)O)N)S" LE1 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(C(C(=O)O)N)S" LE1 InChI InChI 1.03 "InChI=1S/C5H11NO2S/c1-5(2,9)3(6)4(7)8/h3,9H,6H2,1-2H3,(H,7,8)/t3-/m1/s1" LE1 InChIKey InChI 1.03 VVNCNSJFMMFHPL-GSVOUGTGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LE1 "SYSTEMATIC NAME" ACDLabs 10.04 3-sulfanyl-L-valine LE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-3-methyl-3-sulfanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LE1 "Create component" 2009-05-15 RCSB LE1 "Modify descriptor" 2011-06-04 RCSB LE1 "Modify synonyms" 2021-03-01 PDBE LE1 "Modify synonyms" 2022-04-27 PDBE LE1 "Modify backbone" 2023-11-03 PDBE LE1 "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LE1 L-LE1ICILLAMINE ? ? 2 LE1 L-Penicillamine ? ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id LE1 _pdbx_chem_comp_pcm.modified_residue_id VAL _pdbx_chem_comp_pcm.type Sulfhydration _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #