data_LEA # _chem_comp.id LEA _chem_comp.name "PENTANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H10 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "VALERIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces PEI _chem_comp.formula_weight 102.132 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LEA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LEA C2 C2 C 0 1 N N N N N N 115.869 32.376 -22.120 -1.576 -0.048 -0.001 C2 LEA 1 LEA O2 O2 O 0 1 N N N N N N 114.750 32.314 -21.594 -2.760 0.585 -0.000 O2 LEA 2 LEA C3 C3 C 0 1 N N N N N N 116.375 33.129 -23.332 -0.296 0.748 0.001 C3 LEA 3 LEA C4 C4 C 0 1 N N N N N N 115.817 34.406 -24.015 0.899 -0.207 -0.001 C4 LEA 4 LEA C5 C5 C 0 1 N N N N N N 116.906 35.046 -24.984 2.198 0.601 0.001 C5 LEA 5 LEA C6 C6 C 0 1 N N N N N N 116.544 35.441 -26.318 3.393 -0.355 -0.001 C6 LEA 6 LEA O1 O1 O 0 1 N N N N N N 116.791 31.519 -21.692 -1.536 -1.255 0.001 O1 LEA 7 LEA HO2 HO2 H 0 1 N N N N N N 114.745 31.626 -20.939 -3.553 0.032 -0.002 HO2 LEA 8 LEA H31 H31 H 0 1 N N N N N N 117.410 33.394 -23.071 -0.259 1.378 -0.888 H31 LEA 9 LEA H32 H32 H 0 1 N N N N N N 116.380 32.376 -24.134 -0.259 1.375 0.892 H32 LEA 10 LEA H41 H41 H 0 1 N N N N N N 114.924 34.142 -24.600 0.862 -0.837 0.888 H41 LEA 11 LEA H42 H42 H 0 1 N N N N N N 115.545 35.140 -23.242 0.862 -0.834 -0.892 H42 LEA 12 LEA H51 H51 H 0 1 N N N N N N 117.288 35.946 -24.480 2.236 1.231 -0.888 H51 LEA 13 LEA H52 H52 H 0 1 N N N N N N 117.716 34.308 -25.081 2.235 1.227 0.892 H52 LEA 14 LEA H61 H61 H 0 1 N N N N N N 117.424 35.858 -26.829 3.356 -0.985 0.888 H61 LEA 15 LEA H62 H62 H 0 1 N N N N N N 116.179 34.565 -26.874 3.356 -0.981 -0.892 H62 LEA 16 LEA H63 H63 H 0 1 N N N N N N 115.751 36.202 -26.272 4.319 0.221 0.001 H63 LEA 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LEA C2 O2 SING N N 1 LEA C2 C3 SING N N 2 LEA C2 O1 DOUB N N 3 LEA O2 HO2 SING N N 4 LEA C3 C4 SING N N 5 LEA C3 H31 SING N N 6 LEA C3 H32 SING N N 7 LEA C4 C5 SING N N 8 LEA C4 H41 SING N N 9 LEA C4 H42 SING N N 10 LEA C5 C6 SING N N 11 LEA C5 H51 SING N N 12 LEA C5 H52 SING N N 13 LEA C6 H61 SING N N 14 LEA C6 H62 SING N N 15 LEA C6 H63 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LEA SMILES ACDLabs 12.01 "O=C(O)CCCC" LEA InChI InChI 1.03 "InChI=1S/C5H10O2/c1-2-3-4-5(6)7/h2-4H2,1H3,(H,6,7)" LEA InChIKey InChI 1.03 NQPDZGIKBAWPEJ-UHFFFAOYSA-N LEA SMILES_CANONICAL CACTVS 3.370 "CCCCC(O)=O" LEA SMILES CACTVS 3.370 "CCCCC(O)=O" LEA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCC(=O)O" LEA SMILES "OpenEye OEToolkits" 1.7.6 "CCCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LEA "SYSTEMATIC NAME" ACDLabs 12.01 "pentanoic acid" LEA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LEA "Create component" 1999-07-08 RCSB LEA "Modify descriptor" 2011-06-04 RCSB LEA "Modify name" 2011-12-22 RCSB LEA "Modify synonyms" 2020-06-05 PDBE LEA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LEA _pdbx_chem_comp_synonyms.name "VALERIC ACID" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 LEA HIS Pentanoylation Lipid/lipid-like "Amino-acid backbone" N-terminal C2 N ? ? 2 LEA VAL Pentanoylation Lipid/lipid-like "Amino-acid backbone" N-terminal C2 N ? ? 3 LEA CYS Pentanoylation Lipid/lipid-like "Amino-acid side chain" "Any position" C6 SG ? ? #