data_LEA
# 
_chem_comp.id                                    LEA 
_chem_comp.name                                  "PENTANOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H10 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "VALERIC ACID" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         PEI 
_chem_comp.formula_weight                        102.132 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LEA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1B4K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LEA C2  C2  C 0 1 N N N N N N 115.869 32.376 -22.120 -1.576 -0.048 -0.001 C2  LEA 1  
LEA O2  O2  O 0 1 N N N N N N 114.750 32.314 -21.594 -2.760 0.585  -0.000 O2  LEA 2  
LEA C3  C3  C 0 1 N N N N N N 116.375 33.129 -23.332 -0.296 0.748  0.001  C3  LEA 3  
LEA C4  C4  C 0 1 N N N N N N 115.817 34.406 -24.015 0.899  -0.207 -0.001 C4  LEA 4  
LEA C5  C5  C 0 1 N N N N N N 116.906 35.046 -24.984 2.198  0.601  0.001  C5  LEA 5  
LEA C6  C6  C 0 1 N N N N N N 116.544 35.441 -26.318 3.393  -0.355 -0.001 C6  LEA 6  
LEA O1  O1  O 0 1 N N N N N N 116.791 31.519 -21.692 -1.536 -1.255 0.001  O1  LEA 7  
LEA HO2 HO2 H 0 1 N N N N N N 114.745 31.626 -20.939 -3.553 0.032  -0.002 HO2 LEA 8  
LEA H31 H31 H 0 1 N N N N N N 117.410 33.394 -23.071 -0.259 1.378  -0.888 H31 LEA 9  
LEA H32 H32 H 0 1 N N N N N N 116.380 32.376 -24.134 -0.259 1.375  0.892  H32 LEA 10 
LEA H41 H41 H 0 1 N N N N N N 114.924 34.142 -24.600 0.862  -0.837 0.888  H41 LEA 11 
LEA H42 H42 H 0 1 N N N N N N 115.545 35.140 -23.242 0.862  -0.834 -0.892 H42 LEA 12 
LEA H51 H51 H 0 1 N N N N N N 117.288 35.946 -24.480 2.236  1.231  -0.888 H51 LEA 13 
LEA H52 H52 H 0 1 N N N N N N 117.716 34.308 -25.081 2.235  1.227  0.892  H52 LEA 14 
LEA H61 H61 H 0 1 N N N N N N 117.424 35.858 -26.829 3.356  -0.985 0.888  H61 LEA 15 
LEA H62 H62 H 0 1 N N N N N N 116.179 34.565 -26.874 3.356  -0.981 -0.892 H62 LEA 16 
LEA H63 H63 H 0 1 N N N N N N 115.751 36.202 -26.272 4.319  0.221  0.001  H63 LEA 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LEA C2 O2  SING N N 1  
LEA C2 C3  SING N N 2  
LEA C2 O1  DOUB N N 3  
LEA O2 HO2 SING N N 4  
LEA C3 C4  SING N N 5  
LEA C3 H31 SING N N 6  
LEA C3 H32 SING N N 7  
LEA C4 C5  SING N N 8  
LEA C4 H41 SING N N 9  
LEA C4 H42 SING N N 10 
LEA C5 C6  SING N N 11 
LEA C5 H51 SING N N 12 
LEA C5 H52 SING N N 13 
LEA C6 H61 SING N N 14 
LEA C6 H62 SING N N 15 
LEA C6 H63 SING N N 16 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LEA SMILES           ACDLabs              12.01 "O=C(O)CCCC"                                         
LEA InChI            InChI                1.03  "InChI=1S/C5H10O2/c1-2-3-4-5(6)7/h2-4H2,1H3,(H,6,7)" 
LEA InChIKey         InChI                1.03  NQPDZGIKBAWPEJ-UHFFFAOYSA-N                          
LEA SMILES_CANONICAL CACTVS               3.370 "CCCCC(O)=O"                                         
LEA SMILES           CACTVS               3.370 "CCCCC(O)=O"                                         
LEA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCC(=O)O"                                         
LEA SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCC(=O)O"                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LEA "SYSTEMATIC NAME" ACDLabs              12.01 "pentanoic acid" 
LEA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LEA "Create component"  1999-07-08 RCSB 
LEA "Modify descriptor" 2011-06-04 RCSB 
LEA "Modify name"       2011-12-22 RCSB 
LEA "Modify synonyms"   2020-06-05 PDBE 
LEA "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LEA 
_pdbx_chem_comp_synonyms.name         "VALERIC ACID" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 LEA HIS Pentanoylation Lipid/lipid-like "Amino-acid backbone"   N-terminal     C2 N  ? ? 
2 LEA VAL Pentanoylation Lipid/lipid-like "Amino-acid backbone"   N-terminal     C2 N  ? ? 
3 LEA CYS Pentanoylation Lipid/lipid-like "Amino-acid side chain" "Any position" C6 SG ? ? 
#