data_LF1 # _chem_comp.id LF1 _chem_comp.name "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-2-methoxy-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-16 _chem_comp.pdbx_modified_date 2016-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LF1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5G4R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LF1 C01 C01 C 0 1 N N N -22.317 20.230 -39.477 4.926 3.387 1.155 C01 LF1 1 LF1 O05 O05 O 0 1 N N N -21.205 19.392 -39.140 3.903 2.495 0.708 O05 LF1 2 LF1 C06 C06 C 0 1 Y N N -20.769 19.399 -37.842 4.305 1.319 0.166 C06 LF1 3 LF1 C07 C07 C 0 1 Y N N -21.567 19.790 -36.774 5.657 1.024 0.065 C07 LF1 4 LF1 C09 C09 C 0 1 Y N N -21.046 19.789 -35.495 6.065 -0.174 -0.487 C09 LF1 5 LF1 C11 C11 C 0 1 Y N N -19.750 19.378 -35.270 5.131 -1.090 -0.943 C11 LF1 6 LF1 C13 C13 C 0 1 Y N N -18.947 18.979 -36.330 3.784 -0.814 -0.851 C13 LF1 7 LF1 C15 C15 C 0 1 Y N N -19.440 18.991 -37.636 3.357 0.392 -0.289 C15 LF1 8 LF1 C16 C16 C 0 1 N N N -18.469 18.549 -38.692 1.917 0.692 -0.181 C16 LF1 9 LF1 O17 O17 O 0 1 N N N -17.259 18.629 -38.496 1.549 1.745 0.304 O17 LF1 10 LF1 N18 N18 N 0 1 N N N -19.009 18.087 -39.851 1.008 -0.202 -0.619 N18 LF1 11 LF1 C20 C20 C 0 1 Y N N -18.334 17.631 -41.014 -0.361 0.040 -0.431 C20 LF1 12 LF1 C21 C21 C 0 1 Y N N -16.929 17.606 -41.101 -0.849 1.335 -0.493 C21 LF1 13 LF1 C23 C23 C 0 1 Y N N -16.344 17.160 -42.279 -2.203 1.573 -0.307 C23 LF1 14 LF1 N24 N24 N 0 1 N N N -15.010 17.017 -42.691 -2.978 2.733 -0.309 N24 LF1 15 LF1 C25 C25 C 0 1 N N N -13.814 17.324 -41.893 -2.484 4.094 -0.532 C25 LF1 16 LF1 C29 C29 C 0 1 N N N -14.974 16.549 -43.991 -4.257 2.388 -0.072 C29 LF1 17 LF1 O30 O30 O 0 1 N N N -13.983 16.297 -44.646 -5.192 3.165 -0.009 O30 LF1 18 LF1 N31 N31 N 0 1 N N N -16.285 16.374 -44.383 -4.347 1.054 0.084 N31 LF1 19 LF1 C32 C32 C 0 1 N N N -16.697 15.915 -45.709 -5.575 0.303 0.356 C32 LF1 20 LF1 C36 C36 C 0 1 Y N N -17.133 16.775 -43.361 -3.071 0.508 -0.058 C36 LF1 21 LF1 C37 C37 C 0 1 Y N N -18.497 16.779 -43.280 -2.581 -0.788 0.004 C37 LF1 22 LF1 C39 C39 C 0 1 Y N N -19.121 17.238 -42.126 -1.230 -1.025 -0.188 C39 LF1 23 LF1 N40 N40 N 0 1 N N N -20.527 17.219 -42.019 -0.734 -2.334 -0.132 N40 LF1 24 LF1 C41 C41 C 0 1 N N N -21.091 15.972 -41.504 -1.292 -3.155 -1.215 C41 LF1 25 LF1 C44 C44 C 0 1 N N N -22.579 16.028 -41.227 -0.667 -4.551 -1.167 C44 LF1 26 LF1 N47 N47 N 0 1 N N N -23.291 16.547 -42.389 -0.935 -5.160 0.143 N47 LF1 27 LF1 C49 C49 C 0 1 N N N -22.797 17.880 -42.741 -0.377 -4.339 1.227 C49 LF1 28 LF1 C52 C52 C 0 1 N N R -21.334 17.824 -43.080 -1.002 -2.943 1.179 C52 LF1 29 LF1 C54 C54 C 0 1 N N N -20.872 19.221 -43.470 -0.393 -2.073 2.280 C54 LF1 30 LF1 H011 H011 H 0 0 N N N -22.550 20.118 -40.546 5.523 2.899 1.925 H011 LF1 31 LF1 H012 H012 H 0 0 N N N -23.192 19.936 -38.878 5.567 3.655 0.315 H012 LF1 32 LF1 H013 H013 H 0 0 N N N -22.063 21.279 -39.265 4.470 4.288 1.565 H013 LF1 33 LF1 H07 H07 H 0 1 N N N -22.590 20.093 -36.943 6.391 1.733 0.418 H07 LF1 34 LF1 H09 H09 H 0 1 N N N -21.658 20.112 -34.666 7.119 -0.399 -0.564 H09 LF1 35 LF1 H11 H11 H 0 1 N N N -19.357 19.366 -34.264 5.459 -2.024 -1.373 H11 LF1 36 LF1 H13 H13 H 0 1 N N N -17.933 18.657 -36.143 3.059 -1.530 -1.208 H13 LF1 37 LF1 H18 H18 H 0 1 N N N -20.008 18.066 -39.889 1.301 -1.012 -1.065 H18 LF1 38 LF1 H21 H21 H 0 1 N N N -16.319 17.927 -40.269 -0.177 2.158 -0.686 H21 LF1 39 LF1 H251 H251 H 0 0 N N N -12.912 17.110 -42.486 -2.520 4.323 -1.597 H251 LF1 40 LF1 H252 H252 H 0 0 N N N -13.824 18.387 -41.612 -3.108 4.801 0.013 H252 LF1 41 LF1 H253 H253 H 0 0 N N N -13.811 16.704 -40.984 -1.455 4.169 -0.179 H253 LF1 42 LF1 H321 H321 H 0 0 N N N -17.795 15.863 -45.755 -6.417 0.993 0.414 H321 LF1 43 LF1 H322 H322 H 0 0 N N N -16.331 16.619 -46.471 -5.747 -0.414 -0.447 H322 LF1 44 LF1 H323 H323 H 0 0 N N N -16.275 14.917 -45.899 -5.474 -0.228 1.302 H323 LF1 45 LF1 H37 H37 H 0 1 N N N -19.089 16.426 -44.111 -3.253 -1.611 0.196 H37 LF1 46 LF1 H411 H411 H 0 0 N N N -20.908 15.180 -42.245 -2.372 -3.236 -1.091 H411 LF1 47 LF1 H412 H412 H 0 0 N N N -20.575 15.723 -40.565 -1.069 -2.690 -2.175 H412 LF1 48 LF1 H52 H52 H 0 1 N N N -21.233 17.193 -43.975 -2.078 -3.021 1.330 H52 LF1 49 LF1 H441 H441 H 0 0 N N N -22.944 15.016 -41.000 -1.100 -5.171 -1.952 H441 LF1 50 LF1 H442 H442 H 0 0 N N N -22.763 16.686 -40.365 0.410 -4.473 -1.318 H442 LF1 51 LF1 H47 H47 H 0 1 N N N -23.152 15.929 -43.163 -1.923 -5.311 0.276 H47 LF1 52 LF1 H491 H491 H 0 0 N N N -23.356 18.256 -43.610 -0.599 -4.804 2.187 H491 LF1 53 LF1 H492 H492 H 0 0 N N N -22.946 18.559 -41.888 0.703 -4.259 1.102 H492 LF1 54 LF1 H541 H541 H 0 0 N N N -21.520 19.613 -44.268 -0.837 -1.078 2.244 H541 LF1 55 LF1 H542 H542 H 0 0 N N N -20.928 19.884 -42.594 -0.592 -2.525 3.252 H542 LF1 56 LF1 H543 H543 H 0 0 N N N -19.833 19.176 -43.830 0.684 -1.996 2.129 H543 LF1 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LF1 C01 O05 SING N N 1 LF1 O05 C06 SING N N 2 LF1 C06 C07 SING Y N 3 LF1 C06 C15 DOUB Y N 4 LF1 C07 C09 DOUB Y N 5 LF1 C09 C11 SING Y N 6 LF1 C11 C13 DOUB Y N 7 LF1 C13 C15 SING Y N 8 LF1 C15 C16 SING N N 9 LF1 C16 O17 DOUB N N 10 LF1 C16 N18 SING N N 11 LF1 N18 C20 SING N N 12 LF1 C20 C21 SING Y N 13 LF1 C20 C39 DOUB Y N 14 LF1 C21 C23 DOUB Y N 15 LF1 C23 N24 SING N N 16 LF1 C23 C36 SING Y N 17 LF1 N24 C25 SING N N 18 LF1 N24 C29 SING N N 19 LF1 C29 O30 DOUB N N 20 LF1 C29 N31 SING N N 21 LF1 N31 C32 SING N N 22 LF1 N31 C36 SING N N 23 LF1 C36 C37 DOUB Y N 24 LF1 C37 C39 SING Y N 25 LF1 C39 N40 SING N N 26 LF1 N40 C41 SING N N 27 LF1 N40 C52 SING N N 28 LF1 C41 C44 SING N N 29 LF1 C44 N47 SING N N 30 LF1 N47 C49 SING N N 31 LF1 C49 C52 SING N N 32 LF1 C52 C54 SING N N 33 LF1 C01 H011 SING N N 34 LF1 C01 H012 SING N N 35 LF1 C01 H013 SING N N 36 LF1 C07 H07 SING N N 37 LF1 C09 H09 SING N N 38 LF1 C11 H11 SING N N 39 LF1 C13 H13 SING N N 40 LF1 N18 H18 SING N N 41 LF1 C21 H21 SING N N 42 LF1 C25 H251 SING N N 43 LF1 C25 H252 SING N N 44 LF1 C25 H253 SING N N 45 LF1 C32 H321 SING N N 46 LF1 C32 H322 SING N N 47 LF1 C32 H323 SING N N 48 LF1 C37 H37 SING N N 49 LF1 C41 H411 SING N N 50 LF1 C41 H412 SING N N 51 LF1 C52 H52 SING N N 52 LF1 C44 H441 SING N N 53 LF1 C44 H442 SING N N 54 LF1 N47 H47 SING N N 55 LF1 C49 H491 SING N N 56 LF1 C49 H492 SING N N 57 LF1 C54 H541 SING N N 58 LF1 C54 H542 SING N N 59 LF1 C54 H543 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LF1 InChI InChI 1.03 "InChI=1S/C22H27N5O3/c1-14-13-23-9-10-27(14)17-12-19-18(25(2)22(29)26(19)3)11-16(17)24-21(28)15-7-5-6-8-20(15)30-4/h5-8,11-12,14,23H,9-10,13H2,1-4H3,(H,24,28)/t14-/m1/s1" LF1 InChIKey InChI 1.03 FQWDVNSBYDXPIO-CQSZACIVSA-N LF1 SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1C(=O)Nc2cc3N(C)C(=O)N(C)c3cc2N4CCNC[C@H]4C" LF1 SMILES CACTVS 3.385 "COc1ccccc1C(=O)Nc2cc3N(C)C(=O)N(C)c3cc2N4CCNC[CH]4C" LF1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1CNCCN1c2cc3c(cc2NC(=O)c4ccccc4OC)N(C(=O)N3C)C" LF1 SMILES "OpenEye OEToolkits" 1.7.6 "CC1CNCCN1c2cc3c(cc2NC(=O)c4ccccc4OC)N(C(=O)N3C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LF1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-2-methoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LF1 "Create component" 2016-05-16 EBI LF1 "Initial release" 2016-07-06 RCSB #