data_LFI # _chem_comp.id LFI _chem_comp.name "1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 Br3 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Chemical crosslinker" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.002 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LFI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AAA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LFI C10 C1 C 0 1 N N N N N N -29.528 57.526 -3.138 3.349 -2.911 -0.583 C10 LFI 1 LFI C11 C2 C 0 1 N N N N N N -32.514 58.869 3.201 1.337 3.443 0.125 C11 LFI 2 LFI C12 C3 C 0 1 N N N N N N -31.314 63.142 -0.262 -5.190 -0.990 -0.655 C12 LFI 3 LFI C1 C4 C 0 1 N N N N N N -33.427 59.940 -2.962 -1.027 -2.338 1.603 C1 LFI 4 LFI C2 C5 C 0 1 N N N N N N -34.341 61.026 -0.997 -1.785 0.058 1.870 C2 LFI 5 LFI C3 C6 C 0 1 N N N N N N -33.941 58.637 -1.031 0.680 -0.497 1.891 C3 LFI 6 LFI C4 C7 C 0 1 N N N N N N -31.691 58.235 -2.135 1.191 -2.498 0.567 C4 LFI 7 LFI C5 C8 C 0 1 N N N N N N -33.694 59.874 1.192 -0.124 1.655 1.030 C5 LFI 8 LFI C6 C9 C 0 1 N N N N N N -32.423 62.157 -2.331 -3.082 -1.536 0.531 C6 LFI 9 LFI C7 C10 C 0 1 N N N N N N -32.314 63.363 -1.402 -4.075 -0.441 0.237 C7 LFI 10 LFI C8 C11 C 0 1 N N N N N N -30.676 58.525 -3.237 2.562 -1.934 0.293 C8 LFI 11 LFI C9 C12 C 0 1 N N N N N N -33.307 58.591 1.931 1.303 2.040 0.736 C9 LFI 12 LFI N1 N1 N 0 1 N N N N N N -32.978 58.869 -2.093 0.317 -1.805 1.323 N1 LFI 13 LFI N2 N2 N 0 1 N N N N N N -33.401 61.126 -2.116 -2.008 -1.282 1.304 N2 LFI 14 LFI N3 N3 N 0 1 N N N N N N -34.018 59.840 -0.211 -0.399 0.454 1.575 N3 LFI 15 LFI O1 O1 O 0 1 N N N N N N -31.714 62.029 -3.264 -3.250 -2.647 0.072 O1 LFI 16 LFI O2 O2 O 0 1 N N N N N N -31.460 57.439 -1.298 0.875 -3.575 0.108 O2 LFI 17 LFI O3 O3 O 0 1 N N N N N N -33.754 60.915 1.755 -1.025 2.426 0.777 O3 LFI 18 LFI H1 H1 H 0 1 N N N N N N -29.087 57.429 -2.135 3.446 -3.866 -0.065 H1 LFI 19 LFI H2 H2 H 0 1 N N N N N N -29.751 56.526 -3.539 2.822 -3.060 -1.525 H2 LFI 20 LFI H4 H4 H 0 1 N N N N N N -33.179 59.397 3.901 0.761 3.451 -0.800 H4 LFI 21 LFI H5 H5 H 0 1 N N N N N N -32.223 57.900 3.632 0.906 4.156 0.828 H5 LFI 22 LFI H7 H7 H 0 1 N N N N N N -30.949 64.126 0.066 -4.762 -1.353 -1.590 H7 LFI 23 LFI H8 H8 H 0 1 N N N N N N -31.846 62.653 0.567 -5.694 -1.810 -0.144 H8 LFI 24 LFI H10 H10 H 0 1 N N N N N N -34.446 59.744 -3.327 -1.217 -3.207 0.974 H10 LFI 25 LFI H11 H11 H 0 1 N N N N N N -32.747 60.058 -3.819 -1.099 -2.621 2.654 H11 LFI 26 LFI H12 H12 H 0 1 N N N N N N -34.258 61.922 -0.364 -2.476 0.769 1.416 H12 LFI 27 LFI H13 H13 H 0 1 N N N N N N -35.368 60.944 -1.384 -1.939 0.032 2.949 H13 LFI 28 LFI H14 H14 H 0 1 N N N N N N -34.928 58.419 -1.465 0.791 -0.582 2.972 H14 LFI 29 LFI H15 H15 H 0 1 N N N N N N -33.616 57.786 -0.414 1.616 -0.151 1.451 H15 LFI 30 LFI H16 H16 H 0 1 N N N N N N -31.989 64.233 -1.991 -3.570 0.378 -0.275 H16 LFI 31 LFI H17 H17 H 0 1 N N N N N N -33.305 63.563 -0.968 -4.503 -0.078 1.171 H17 LFI 32 LFI H18 H18 H 0 1 N N N N N N -30.286 59.547 -3.118 3.089 -1.785 1.235 H18 LFI 33 LFI H19 H19 H 0 1 N N N N N N -31.162 58.430 -4.219 2.465 -0.980 -0.224 H19 LFI 34 LFI H20 H20 H 0 1 N N N N N N -34.225 58.048 2.200 1.734 1.328 0.033 H20 LFI 35 LFI H21 H21 H 0 1 N N N N N N -32.695 57.969 1.262 1.880 2.033 1.661 H21 LFI 36 LFI BR1 BR1 BR 0 0 N Y N N N N -28.655 58.563 -4.217 5.137 -2.176 -0.941 BR1 LFI 37 LFI BR2 BR2 BR 0 0 N Y N N N N -29.908 62.146 -0.675 -6.485 0.439 -1.039 BR2 LFI 38 LFI BR3 BR3 BR 0 0 N Y N N N N -30.998 59.870 3.015 3.198 3.946 -0.259 BR3 LFI 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LFI O1 C6 DOUB N N 1 LFI C8 C10 SING N N 2 LFI C8 C4 SING N N 3 LFI C1 N2 SING N N 4 LFI C1 N1 SING N N 5 LFI C6 N2 SING N N 6 LFI C6 C7 SING N N 7 LFI C4 N1 SING N N 8 LFI C4 O2 DOUB N N 9 LFI N2 C2 SING N N 10 LFI N1 C3 SING N N 11 LFI C7 C12 SING N N 12 LFI C3 N3 SING N N 13 LFI C2 N3 SING N N 14 LFI N3 C5 SING N N 15 LFI C5 O3 DOUB N N 16 LFI C5 C9 SING N N 17 LFI C9 C11 SING N N 18 LFI C10 H1 SING N N 19 LFI C10 H2 SING N N 20 LFI C11 H4 SING N N 21 LFI C11 H5 SING N N 22 LFI C12 H7 SING N N 23 LFI C12 H8 SING N N 24 LFI C1 H10 SING N N 25 LFI C1 H11 SING N N 26 LFI C2 H12 SING N N 27 LFI C2 H13 SING N N 28 LFI C3 H14 SING N N 29 LFI C3 H15 SING N N 30 LFI C7 H16 SING N N 31 LFI C7 H17 SING N N 32 LFI C8 H18 SING N N 33 LFI C8 H19 SING N N 34 LFI C9 H20 SING N N 35 LFI C9 H21 SING N N 36 LFI C10 BR1 SING N N 37 LFI C12 BR2 SING N N 38 LFI C11 BR3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LFI InChI InChI 1.06 "InChI=1S/C12H18Br3N3O3/c13-4-1-10(19)16-7-17(11(20)2-5-14)9-18(8-16)12(21)3-6-15/h1-9H2" LFI InChIKey InChI 1.06 UYNTZRFVDTZUQI-UHFFFAOYSA-N LFI SMILES_CANONICAL CACTVS 3.385 "BrCCC(=O)N1CN(CN(C1)C(=O)CCBr)C(=O)CCBr" LFI SMILES CACTVS 3.385 "BrCCC(=O)N1CN(CN(C1)C(=O)CCBr)C(=O)CCBr" LFI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1N(CN(CN1C(=O)CCBr)C(=O)CCBr)C(=O)CCBr" LFI SMILES "OpenEye OEToolkits" 2.0.7 "C1N(CN(CN1C(=O)CCBr)C(=O)CCBr)C(=O)CCBr" # _pdbx_chem_comp_identifier.comp_id LFI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LFI _pdbx_chem_comp_synonyms.name "Chemical crosslinker" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LFI "Create component" 2022-07-01 PDBE LFI "Modify descriptor" 2022-08-22 RCSB LFI "Initial release" 2023-09-20 RCSB LFI "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C10 SG ? ? 2 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C11 SG ? ? 3 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C12 SG ? ? #