data_LH9
#
_chem_comp.id LH9
_chem_comp.name "[(2~{S})-2,3-bis(oxidanyl)propyl] heptadec-9-enoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H38 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-11
_chem_comp.pdbx_modified_date 2020-12-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 342.513
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LH9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ACG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LH9 C1 C1 C 0 1 N N N -8.868 9.247 41.020 12.140 3.283 -0.185 C1 LH9 1
LH9 C10 C2 C 0 1 N N N -8.936 5.124 33.022 2.871 -2.671 0.153 C10 LH9 2
LH9 C11 C3 C 0 1 N N N -9.299 4.084 31.959 1.818 -1.700 -0.385 C11 LH9 3
LH9 C12 C4 C 0 1 N N N -9.307 4.704 30.570 0.451 -2.053 0.204 C12 LH9 4
LH9 C13 C5 C 0 1 N N N -8.994 3.701 29.452 -0.602 -1.082 -0.334 C13 LH9 5
LH9 C14 C6 C 0 1 N N N -10.201 3.612 28.552 -1.969 -1.436 0.255 C14 LH9 6
LH9 C15 C7 C 0 1 N N N -10.069 2.472 27.556 -3.023 -0.465 -0.283 C15 LH9 7
LH9 C16 C8 C 0 1 N N N -11.111 2.727 26.469 -4.390 -0.818 0.305 C16 LH9 8
LH9 C17 C9 C 0 1 N N N -10.863 1.882 25.228 -5.427 0.138 -0.224 C17 LH9 9
LH9 C18 C10 C 0 1 N N N -12.232 2.386 23.352 -7.652 0.975 -0.392 C18 LH9 10
LH9 C19 C11 C 0 1 N N S -12.377 3.475 22.286 -9.051 0.682 0.155 C19 LH9 11
LH9 C2 C12 C 0 1 N N N -8.900 9.225 39.488 10.772 2.930 0.403 C2 LH9 12
LH9 C20 C13 C 0 1 N N N -11.009 4.039 21.874 -10.066 1.608 -0.518 C20 LH9 13
LH9 C3 C14 C 0 1 N N N -7.533 9.565 38.878 10.287 1.607 -0.194 C3 LH9 14
LH9 C4 C15 C 0 1 N N N -7.678 9.835 37.376 8.919 1.254 0.394 C4 LH9 15
LH9 C5 C16 C 0 1 N N N -7.923 8.554 36.564 8.434 -0.068 -0.203 C5 LH9 16
LH9 C6 C17 C 0 1 N N N -9.416 8.168 36.579 7.066 -0.422 0.386 C6 LH9 17
LH9 C7 C18 C 0 1 N N N -9.939 7.872 35.171 6.580 -1.744 -0.211 C7 LH9 18
LH9 C8 C19 C 0 1 N N N -10.034 6.354 34.974 5.234 -2.092 0.368 C8 LH9 19
LH9 C9 C20 C 0 1 N N N -10.162 5.902 33.511 4.218 -2.323 -0.426 C9 LH9 20
LH9 O1 O1 O 0 1 N N N -10.584 0.734 25.338 -5.106 1.013 -0.993 O1 LH9 21
LH9 O2 O2 O 0 1 N N N -10.989 2.499 23.976 -6.708 0.019 0.158 O2 LH9 22
LH9 O3 O3 O 0 1 N N N -13.157 4.529 22.788 -9.067 0.905 1.567 O3 LH9 23
LH9 O4 O4 O 0 1 N N N -11.049 4.453 20.525 -11.385 1.257 -0.095 O4 LH9 24
LH9 H1 H1 H 0 1 N N N -9.865 8.998 41.412 12.853 2.494 0.052 H1 LH9 25
LH9 H3 H2 H 0 1 N N N -8.138 8.508 41.382 12.055 3.382 -1.267 H3 LH9 26
LH9 H2 H3 H 0 1 N N N -8.578 10.250 41.366 12.486 4.225 0.240 H2 LH9 27
LH9 H19 H4 H 0 1 N N N -8.478 4.609 33.879 2.913 -2.596 1.240 H19 LH9 28
LH9 H18 H5 H 0 1 N N N -8.214 5.834 32.592 2.606 -3.689 -0.131 H18 LH9 29
LH9 H20 H6 H 0 1 N N N -10.298 3.679 32.178 2.084 -0.682 -0.100 H20 LH9 30
LH9 H21 H7 H 0 1 N N N -8.560 3.270 31.985 1.777 -1.774 -1.471 H21 LH9 31
LH9 H23 H8 H 0 1 N N N -8.553 5.504 30.541 0.185 -3.071 -0.081 H23 LH9 32
LH9 H22 H9 H 0 1 N N N -10.303 5.132 30.385 0.493 -1.979 1.290 H22 LH9 33
LH9 H24 H10 H 0 1 N N N -8.779 2.714 29.886 -0.336 -0.064 -0.049 H24 LH9 34
LH9 H25 H11 H 0 1 N N N -8.123 4.045 28.875 -0.644 -1.157 -1.421 H25 LH9 35
LH9 H27 H12 H 0 1 N N N -10.307 4.558 28.001 -2.235 -2.454 -0.030 H27 LH9 36
LH9 H26 H13 H 0 1 N N N -11.096 3.446 29.169 -1.928 -1.361 1.341 H26 LH9 37
LH9 H29 H14 H 0 1 N N N -10.264 1.509 28.051 -2.757 0.553 0.001 H29 LH9 38
LH9 H28 H15 H 0 1 N N N -9.059 2.462 27.120 -3.064 -0.539 -1.370 H28 LH9 39
LH9 H30 H16 H 0 1 N N N -11.077 3.790 26.187 -4.656 -1.836 0.021 H30 LH9 40
LH9 H31 H17 H 0 1 N N N -12.107 2.486 26.869 -4.348 -0.743 1.392 H31 LH9 41
LH9 H32 H18 H 0 1 N N N -13.029 2.500 24.102 -7.662 0.891 -1.479 H32 LH9 42
LH9 H33 H19 H 0 1 N N N -12.314 1.397 22.877 -7.355 1.984 -0.107 H33 LH9 43
LH9 H34 H20 H 0 1 N N N -12.855 3.035 21.398 -9.313 -0.356 -0.052 H34 LH9 44
LH9 H5 H21 H 0 1 N N N -9.638 9.962 39.138 10.857 2.830 1.485 H5 LH9 45
LH9 H4 H22 H 0 1 N N N -9.198 8.220 39.154 10.060 3.719 0.166 H4 LH9 46
LH9 H36 H23 H 0 1 N N N -10.242 3.260 21.994 -9.857 2.641 -0.239 H36 LH9 47
LH9 H35 H24 H 0 1 N N N -10.761 4.900 22.513 -9.992 1.503 -1.601 H35 LH9 48
LH9 H7 H25 H 0 1 N N N -6.846 8.720 39.031 10.202 1.707 -1.276 H7 LH9 49
LH9 H6 H26 H 0 1 N N N -7.127 10.461 39.371 11.000 0.818 0.044 H6 LH9 50
LH9 H8 H27 H 0 1 N N N -6.755 10.310 37.013 9.004 1.155 1.477 H8 LH9 51
LH9 H9 H28 H 0 1 N N N -8.527 10.517 37.221 8.206 2.043 0.157 H9 LH9 52
LH9 H11 H29 H 0 1 N N N -7.335 7.733 37.000 8.349 0.031 -1.285 H11 LH9 53
LH9 H10 H30 H 0 1 N N N -7.605 8.721 35.524 9.146 -0.858 0.035 H10 LH9 54
LH9 H13 H31 H 0 1 N N N -9.995 9.000 37.007 7.151 -0.521 1.468 H13 LH9 55
LH9 H12 H32 H 0 1 N N N -9.546 7.272 37.203 6.353 0.368 0.148 H12 LH9 56
LH9 H15 H33 H 0 1 N N N -9.250 8.297 34.426 6.496 -1.645 -1.293 H15 LH9 57
LH9 H14 H34 H 0 1 N N N -10.935 8.322 35.047 7.293 -2.534 0.027 H14 LH9 58
LH9 H39 H35 H 0 1 N N N -10.013 5.657 35.799 5.105 -2.152 1.439 H39 LH9 59
LH9 H17 H37 H 0 1 N N N -11.023 6.110 32.894 4.346 -2.263 -1.497 H17 LH9 60
LH9 H37 H39 H 0 1 N N N -14.008 4.197 23.048 -8.843 1.809 1.825 H37 LH9 61
LH9 H38 H40 H 0 1 N N N -10.201 4.801 20.275 -12.081 1.805 -0.484 H38 LH9 62
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LH9 O4 C20 SING N N 1
LH9 C20 C19 SING N N 2
LH9 C19 O3 SING N N 3
LH9 C19 C18 SING N N 4
LH9 C18 O2 SING N N 5
LH9 O2 C17 SING N N 6
LH9 C17 O1 DOUB N N 7
LH9 C17 C16 SING N N 8
LH9 C16 C15 SING N N 9
LH9 C15 C14 SING N N 10
LH9 C14 C13 SING N N 11
LH9 C13 C12 SING N N 12
LH9 C12 C11 SING N N 13
LH9 C11 C10 SING N N 14
LH9 C10 C9 SING N N 15
LH9 C9 C8 DOUB N E 16
LH9 C8 C7 SING N N 17
LH9 C7 C6 SING N N 18
LH9 C5 C6 SING N N 19
LH9 C5 C4 SING N N 20
LH9 C4 C3 SING N N 21
LH9 C3 C2 SING N N 22
LH9 C2 C1 SING N N 23
LH9 C1 H1 SING N N 24
LH9 C1 H3 SING N N 25
LH9 C1 H2 SING N N 26
LH9 C10 H19 SING N N 27
LH9 C10 H18 SING N N 28
LH9 C11 H20 SING N N 29
LH9 C11 H21 SING N N 30
LH9 C12 H23 SING N N 31
LH9 C12 H22 SING N N 32
LH9 C13 H24 SING N N 33
LH9 C13 H25 SING N N 34
LH9 C14 H27 SING N N 35
LH9 C14 H26 SING N N 36
LH9 C15 H29 SING N N 37
LH9 C15 H28 SING N N 38
LH9 C16 H30 SING N N 39
LH9 C16 H31 SING N N 40
LH9 C18 H32 SING N N 41
LH9 C18 H33 SING N N 42
LH9 C19 H34 SING N N 43
LH9 C2 H5 SING N N 44
LH9 C2 H4 SING N N 45
LH9 C20 H36 SING N N 46
LH9 C20 H35 SING N N 47
LH9 C3 H7 SING N N 48
LH9 C3 H6 SING N N 49
LH9 C4 H8 SING N N 50
LH9 C4 H9 SING N N 51
LH9 C5 H11 SING N N 52
LH9 C5 H10 SING N N 53
LH9 C6 H13 SING N N 54
LH9 C6 H12 SING N N 55
LH9 C7 H15 SING N N 56
LH9 C7 H14 SING N N 57
LH9 C8 H39 SING N N 58
LH9 C9 H17 SING N N 59
LH9 O3 H37 SING N N 60
LH9 O4 H38 SING N N 61
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LH9 InChI InChI 1.03 "InChI=1S/C20H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-20(23)24-18-19(22)17-21/h8-9,19,21-22H,2-7,10-18H2,1H3/t19-/m0/s1"
LH9 InChIKey InChI 1.03 NXAQGVNJNZDCNZ-IBGZPJMESA-N
LH9 SMILES_CANONICAL CACTVS 3.385 "CCCCCCC/C=C/CCCCCCCC(=O)OC[C@@H](O)CO"
LH9 SMILES CACTVS 3.385 "CCCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO"
LH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC=CCCCCCCCC(=O)OC[C@H](CO)O"
LH9 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC=CCCCCCCCC(=O)OCC(CO)O"
#
_pdbx_chem_comp_identifier.comp_id LH9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{S})-2,3-bis(oxidanyl)propyl] heptadec-9-enoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LH9 "Create component" 2020-09-11 PDBE
LH9 "Initial release" 2020-12-16 RCSB
##