data_LK3 # _chem_comp.id LK3 _chem_comp.name "N-{[6-(PENTYLOXY)NAPHTHALEN-2-YL]SULFONYL}-D-GLUTAMIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H25 N O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.480 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LK3 O28 O28 O 0 1 N N N -22.281 5.763 19.391 -0.521 2.708 2.406 O28 LK3 1 LK3 S11 S11 S 0 1 N N N -22.214 4.633 18.409 -1.149 2.017 1.296 S11 LK3 2 LK3 O27 O27 O 0 1 N N N -21.712 5.156 17.095 -2.501 1.508 1.425 O27 LK3 3 LK3 N N N 0 1 N N N -23.697 3.992 18.189 -0.118 0.762 0.765 N LK3 4 LK3 CA CA C 0 1 N N N -24.439 3.889 19.455 -0.662 -0.392 0.052 CA LK3 5 LK3 C C C 0 1 N N N -25.005 5.260 19.842 0.366 -0.842 -0.970 C LK3 6 LK3 OXT OXT O 0 1 N N N -25.062 5.533 21.061 -0.101 -1.854 -1.749 OXT LK3 7 LK3 O O O 0 1 N N N -25.365 6.012 18.912 1.488 -0.371 -1.104 O LK3 8 LK3 CB CB C 0 1 N N N -25.580 2.886 19.267 -1.066 -1.526 1.009 CB LK3 9 LK3 CG CG C 0 1 N N N -26.381 2.671 20.553 0.038 -2.064 1.923 CG LK3 10 LK3 CD CD C 0 1 N N N -27.409 1.550 20.383 -0.435 -3.106 2.906 CD LK3 11 LK3 OE2 OE2 O 0 1 N N N -27.344 0.869 19.337 -1.573 -3.556 2.928 OE2 LK3 12 LK3 OE1 OE1 O 0 1 N N N -28.235 1.390 21.308 0.541 -3.503 3.759 OE1 LK3 13 LK3 C12 C12 C 0 1 N N N -21.121 3.408 19.022 -1.138 3.102 -0.099 C12 LK3 14 LK3 C17 C17 C 0 1 N N N -21.039 3.194 20.393 -0.186 4.100 -0.170 C17 LK3 15 LK3 C16 C16 C 0 1 N N N -20.195 2.213 20.901 -0.175 4.957 -1.270 C16 LK3 16 LK3 C15 C15 C 0 1 N N N -19.428 1.441 20.035 -1.120 4.813 -2.300 C15 LK3 17 LK3 C21 C21 C 0 1 N N N -18.605 0.442 20.543 -1.124 5.666 -3.415 C21 LK3 18 LK3 C20 C20 C 0 1 N N N -17.851 -0.349 19.683 -2.070 5.509 -4.428 C20 LK3 19 LK3 C19 C19 C 0 1 N N N -17.913 -0.123 18.311 -3.023 4.498 -4.341 C19 LK3 20 LK3 C18 C18 C 0 1 N N N -18.738 0.875 17.803 -3.033 3.641 -3.240 C18 LK3 21 LK3 C14 C14 C 0 1 N N N -19.502 1.657 18.663 -2.089 3.785 -2.211 C14 LK3 22 LK3 C13 C13 C 0 1 N N N -20.350 2.638 18.157 -2.084 2.932 -1.096 C13 LK3 23 LK3 O22 O22 O 0 1 N N N -17.120 -1.392 20.164 -2.060 6.344 -5.503 O22 LK3 24 LK3 C23 C23 C 0 1 N N N -16.676 -1.160 21.510 -2.528 5.812 -6.742 C23 LK3 25 LK3 C24 C24 C 0 1 N N N -15.310 -0.472 21.514 -1.817 6.525 -7.883 C24 LK3 26 LK3 C25 C25 C 0 1 N N N -14.248 -1.369 20.875 -2.261 5.993 -9.244 C25 LK3 27 LK3 C26 C26 C 0 1 N N N -12.879 -0.686 20.882 -1.512 6.685 -10.383 C26 LK3 28 LK3 C30 C30 C 0 1 N N N -11.819 -1.583 20.241 -1.926 6.134 -11.738 C30 LK3 29 LK3 H H H 0 1 N N N -24.211 4.578 17.563 0.767 0.613 1.271 H LK3 30 LK3 HA HA H 0 1 N N N -23.769 3.549 20.258 -1.548 -0.047 -0.495 HA LK3 31 LK3 HBC1 1HBC H 0 0 N N N -26.259 3.270 18.492 -1.496 -2.348 0.423 HBC1 LK3 32 LK3 HBC2 2HBC H 0 0 N N N -25.138 1.921 18.978 -1.875 -1.160 1.654 HBC2 LK3 33 LK3 HXT HXT H 0 1 N N N -25.423 6.404 21.174 0.525 -2.182 -2.429 HXT LK3 34 LK3 HGC1 1HGC H 0 0 N N N -25.688 2.400 21.363 0.866 -2.485 1.342 HGC1 LK3 35 LK3 HGC2 2HGC H 0 0 N N N -26.916 3.602 20.792 0.473 -1.241 2.504 HGC2 LK3 36 LK3 HE1 HE1 H 0 1 N N N -28.812 0.666 21.096 0.274 -4.188 4.408 HE1 LK3 37 LK3 H17 H17 H 0 1 N N N -21.634 3.793 21.067 0.556 4.231 0.614 H17 LK3 38 LK3 H13 H13 H 0 1 N N N -20.410 2.802 17.091 -2.825 2.138 -1.018 H13 LK3 39 LK3 H16 H16 H 0 1 N N N -20.135 2.051 21.967 0.579 5.740 -1.318 H16 LK3 40 LK3 H21 H21 H 0 1 N N N -18.551 0.280 21.609 -0.385 6.462 -3.498 H21 LK3 41 LK3 H19 H19 H 0 1 N N N -17.319 -0.724 17.639 -3.761 4.371 -5.128 H19 LK3 42 LK3 H18 H18 H 0 1 N N N -18.786 1.043 16.737 -3.787 2.858 -3.193 H18 LK3 43 LK3 H231 1H23 H 0 0 N N N -17.405 -0.516 22.024 -2.319 4.738 -6.761 H231 LK3 44 LK3 H232 2H23 H 0 0 N N N -16.589 -2.127 22.027 -3.611 5.965 -6.800 H232 LK3 45 LK3 H241 1H24 H 0 0 N N N -15.379 0.465 20.943 -2.012 7.603 -7.815 H241 LK3 46 LK3 H242 2H24 H 0 0 N N N -15.020 -0.268 22.555 -0.733 6.409 -7.765 H242 LK3 47 LK3 H251 1H25 H 0 0 N N N -14.182 -2.308 21.445 -3.340 6.149 -9.366 H251 LK3 48 LK3 H252 2H25 H 0 0 N N N -14.537 -1.568 19.832 -2.083 4.912 -9.291 H252 LK3 49 LK3 H261 1H26 H 0 0 N N N -12.945 0.253 20.314 -1.708 7.763 -10.358 H261 LK3 50 LK3 H262 2H26 H 0 0 N N N -12.589 -0.488 21.924 -0.432 6.549 -10.255 H262 LK3 51 LK3 H301 1H30 H 0 0 N N N -12.101 -1.798 19.200 -1.714 5.062 -11.807 H301 LK3 52 LK3 H302 2H30 H 0 0 N N N -10.846 -1.070 20.259 -2.996 6.285 -11.912 H302 LK3 53 LK3 H303 3H30 H 0 0 N N N -11.748 -2.525 20.804 -1.377 6.641 -12.537 H303 LK3 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LK3 O27 S11 DOUB N N 1 LK3 S11 N SING N N 2 LK3 N CA SING N N 3 LK3 CA C SING N N 4 LK3 C OXT SING N N 5 LK3 C O DOUB N N 6 LK3 CA CB SING N N 7 LK3 CB CG SING N N 8 LK3 CG CD SING N N 9 LK3 CD OE2 DOUB N N 10 LK3 CD OE1 SING N N 11 LK3 S11 C12 SING N N 12 LK3 C12 C17 SING N N 13 LK3 C17 C16 DOUB N N 14 LK3 C16 C15 SING N N 15 LK3 C15 C21 SING N N 16 LK3 C21 C20 DOUB N N 17 LK3 C20 C19 SING N N 18 LK3 C19 C18 DOUB N N 19 LK3 C15 C14 DOUB N N 20 LK3 C18 C14 SING N N 21 LK3 C12 C13 DOUB N N 22 LK3 C14 C13 SING N N 23 LK3 C20 O22 SING N N 24 LK3 O22 C23 SING N N 25 LK3 S11 O28 DOUB N N 26 LK3 C23 C24 SING N N 27 LK3 C24 C25 SING N N 28 LK3 C25 C26 SING N N 29 LK3 C26 C30 SING N N 30 LK3 N H SING N N 31 LK3 CB HBC1 SING N N 32 LK3 CB HBC2 SING N N 33 LK3 OXT HXT SING N N 34 LK3 CG HGC1 SING N N 35 LK3 CG HGC2 SING N N 36 LK3 OE1 HE1 SING N N 37 LK3 C17 H17 SING N N 38 LK3 C13 H13 SING N N 39 LK3 C16 H16 SING N N 40 LK3 C21 H21 SING N N 41 LK3 C19 H19 SING N N 42 LK3 C18 H18 SING N N 43 LK3 C23 H231 SING N N 44 LK3 C23 H232 SING N N 45 LK3 C24 H241 SING N N 46 LK3 C24 H242 SING N N 47 LK3 C25 H251 SING N N 48 LK3 C25 H252 SING N N 49 LK3 C26 H261 SING N N 50 LK3 C26 H262 SING N N 51 LK3 C30 H301 SING N N 52 LK3 C30 H302 SING N N 53 LK3 C30 H303 SING N N 54 LK3 CA HA SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LK3 SMILES ACDLabs 10.04 "O=C(O)C(NS(=O)(=O)c1ccc2c(c1)ccc(OCCCCC)c2)CCC(=O)O" LK3 SMILES_CANONICAL CACTVS 3.341 "CCCCCOc1ccc2cc(ccc2c1)[S](=O)(=O)N[C@H](CCC(O)=O)C(O)=O" LK3 SMILES CACTVS 3.341 "CCCCCOc1ccc2cc(ccc2c1)[S](=O)(=O)N[CH](CCC(O)=O)C(O)=O" LK3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCOc1ccc2cc(ccc2c1)S(=O)(=O)N[C@H](CCC(=O)O)C(=O)O" LK3 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCOc1ccc2cc(ccc2c1)S(=O)(=O)NC(CCC(=O)O)C(=O)O" LK3 InChI InChI 1.03 "InChI=1S/C20H25NO7S/c1-2-3-4-11-28-16-7-5-15-13-17(8-6-14(15)12-16)29(26,27)21-18(20(24)25)9-10-19(22)23/h5-8,12-13,18,21H,2-4,9-11H2,1H3,(H,22,23)(H,24,25)/t18-/m1/s1" LK3 InChIKey InChI 1.03 LIGACKDHLKEZFH-GOSISDBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LK3 "SYSTEMATIC NAME" ACDLabs 10.04 "N-{[6-(pentyloxy)naphthalen-2-yl]sulfonyl}-D-glutamic acid" LK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[(6-pentoxynaphthalen-2-yl)sulfonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LK3 "Create component" 2007-03-06 PDBJ LK3 "Modify descriptor" 2011-06-04 RCSB #