data_LKA # _chem_comp.id LKA _chem_comp.name 5-thio-alpha-D-mannopyranosylamine _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-THIO-A/B-D-MANNOPYRANOSYLAMINE; 5-thio-alpha-D-mannosylamine; 5-thio-D-mannosylamine; 5-thio-mannosylamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-10-07 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 195.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LKA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1R33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LKA 5-THIO-A/B-D-MANNOPYRANOSYLAMINE PDB ? 2 LKA 5-thio-alpha-D-mannosylamine PDB ? 3 LKA 5-thio-D-mannosylamine PDB ? 4 LKA 5-thio-mannosylamine PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LKA C5 C5 C 0 1 N N R 29.872 67.241 7.219 1.054 0.274 0.658 C5 LKA 1 LKA S5 S5 S 0 1 N N N 29.556 66.497 8.851 0.348 1.698 -0.219 S5 LKA 2 LKA C1 C1 C 0 1 N N S 30.917 65.319 9.159 -1.417 1.385 0.064 C1 LKA 3 LKA N1 N1 N 0 1 N N N 30.881 64.710 10.260 -1.705 1.465 1.503 N1 LKA 4 LKA C2 C2 C 0 1 N N S 32.364 66.064 9.120 -1.773 -0.010 -0.451 C2 LKA 5 LKA O2 O2 O 0 1 N N N 33.387 65.463 9.472 -1.390 -0.117 -1.824 O2 LKA 6 LKA C3 C3 C 0 1 N N S 32.474 66.846 7.667 -1.037 -1.071 0.364 C3 LKA 7 LKA O3 O3 O 0 1 N N N 33.650 66.243 6.970 -1.534 -2.363 0.012 O3 LKA 8 LKA C4 C4 C 0 1 N N S 31.392 66.761 6.767 0.463 -1.015 0.085 C4 LKA 9 LKA O4 O4 O 0 1 N N N 31.473 67.472 5.518 1.098 -2.140 0.695 O4 LKA 10 LKA C6 C6 C 0 1 N N N 28.902 66.843 6.584 2.573 0.264 0.477 C6 LKA 11 LKA O6 O6 O 0 1 N N N 27.637 67.124 6.848 2.888 0.053 -0.901 O6 LKA 12 LKA H5 H5 H 0 1 N N N 29.923 68.349 7.105 0.815 0.345 1.719 H5 LKA 13 LKA H1 H1 H 0 1 N N N 30.779 64.576 8.340 -2.009 2.131 -0.467 H1 LKA 14 LKA HN11 HN11 H 0 0 N N N 29.983 64.237 10.365 -1.455 2.397 1.797 HN11 LKA 15 LKA HN12 HN12 H 0 0 N N N 31.641 64.052 10.432 -2.706 1.387 1.603 HN12 LKA 16 LKA H2 H2 H 0 1 N N N 32.358 66.774 9.980 -2.848 -0.167 -0.362 H2 LKA 17 LKA HO2 HO2 H 0 1 N N N 34.231 65.898 9.449 -1.875 0.568 -2.304 HO2 LKA 18 LKA H3 H3 H 0 1 N N N 32.528 67.929 7.928 -1.212 -0.894 1.425 H3 LKA 19 LKA HO3 HO3 H 0 1 N N N 33.713 66.692 6.135 -2.482 -2.359 0.202 HO3 LKA 20 LKA H4 H4 H 0 1 N N N 31.515 65.654 6.710 0.632 -1.043 -0.991 H4 LKA 21 LKA HO4 HO4 H 0 1 N N N 32.344 67.197 5.259 0.698 -2.931 0.308 HO4 LKA 22 LKA H61 H61 H 0 1 N N N 28.979 65.731 6.553 2.984 1.221 0.800 H61 LKA 23 LKA H62 H62 H 0 1 N N N 29.076 67.138 5.523 3.006 -0.538 1.075 H62 LKA 24 LKA HO6 HO6 H 0 1 N N N 26.885 66.816 6.356 3.852 0.054 -0.971 HO6 LKA 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LKA C5 S5 SING N N 1 LKA C5 C4 SING N N 2 LKA C5 C6 SING N N 3 LKA C5 H5 SING N N 4 LKA S5 C1 SING N N 5 LKA C1 N1 SING N N 6 LKA C1 C2 SING N N 7 LKA C1 H1 SING N N 8 LKA N1 HN11 SING N N 9 LKA N1 HN12 SING N N 10 LKA C2 O2 SING N N 11 LKA C2 C3 SING N N 12 LKA C2 H2 SING N N 13 LKA O2 HO2 SING N N 14 LKA C3 O3 SING N N 15 LKA C3 C4 SING N N 16 LKA C3 H3 SING N N 17 LKA O3 HO3 SING N N 18 LKA C4 O4 SING N N 19 LKA C4 H4 SING N N 20 LKA O4 HO4 SING N N 21 LKA C6 O6 SING N N 22 LKA C6 H61 SING N N 23 LKA C6 H62 SING N N 24 LKA O6 HO6 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LKA SMILES ACDLabs 10.04 "OC1C(O)C(SC(N)C1O)CO" LKA SMILES_CANONICAL CACTVS 3.341 "N[C@H]1S[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O" LKA SMILES CACTVS 3.341 "N[CH]1S[CH](CO)[CH](O)[CH](O)[CH]1O" LKA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](S1)N)O)O)O)O" LKA SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(S1)N)O)O)O)O" LKA InChI InChI 1.03 "InChI=1S/C6H13NO4S/c7-6-5(11)4(10)3(9)2(1-8)12-6/h2-6,8-11H,1,7H2/t2-,3-,4+,5+,6+/m1/s1" LKA InChIKey InChI 1.03 FGVRMLQUWLZGLJ-PQMKYFCFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LKA "SYSTEMATIC NAME" ACDLabs 10.04 5-thio-alpha-D-mannopyranosylamine LKA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,5S,6R)-2-amino-6-(hydroxymethyl)thiane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support LKA "CARBOHYDRATE ISOMER" D PDB ? LKA "CARBOHYDRATE ANOMER" alpha PDB ? LKA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LKA "Create component" 2003-10-07 RCSB LKA "Modify descriptor" 2011-06-04 RCSB LKA "Modify atom id" 2020-05-04 RCSB LKA "Other modification" 2020-07-03 RCSB LKA "Modify name" 2020-07-17 RCSB LKA "Modify synonyms" 2020-07-17 RCSB LKA "Modify internal type" 2020-07-17 RCSB LKA "Modify linking type" 2020-07-17 RCSB LKA "Modify component atom id" 2020-07-17 RCSB ##