data_LLF
#
_chem_comp.id LLF
_chem_comp.name "(4-{(E)-[(2,2-DIFLUOROETHYL)IMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 F2 N2 O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(E)-N-(2,2-DIFLUOROETHYL)PYRIDOXIMINE-5'-PHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-04-05
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 310.191
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LLF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LLF CBF CBF C 0 1 N N N N N N 8.661 -2.987 43.006 -3.918 -2.611 0.099 CBF LLF 1
LLF CAF CAF C 0 1 N N N N N N 8.341 -1.882 41.996 -3.019 -2.129 -1.040 CAF LLF 2
LLF F1 F1 F 0 1 N N N N N N 9.490 -3.892 42.265 -3.188 -2.636 1.292 F1 LLF 3
LLF F2 F2 F 0 1 N N N N N N 9.396 -2.459 44.136 -5.005 -1.741 0.236 F2 LLF 4
LLF NF NF N 0 1 N N N N N N 7.958 -0.697 42.729 -2.530 -0.781 -0.739 NF LLF 5
LLF C4A C4A C 0 1 N N N N N N 6.686 -0.776 42.385 -1.268 -0.579 -0.546 C4A LLF 6
LLF C4 C4 C 0 1 Y N N N N N 5.722 -0.141 43.331 -0.775 0.779 -0.242 C4 LLF 7
LLF C3 C3 C 0 1 Y N N N N N 6.151 0.378 44.564 -1.661 1.866 -0.154 C3 LLF 8
LLF O3 O3 O 0 1 N N N N N N 7.458 0.029 45.101 -2.992 1.689 -0.351 O3 LLF 9
LLF C2 C2 C 0 1 Y N N N N N 5.324 1.268 45.263 -1.150 3.124 0.128 C2 LLF 10
LLF C2A C2A C 0 1 N N N N N N 5.520 1.423 46.739 -2.084 4.303 0.220 C2A LLF 11
LLF N1 N1 N 0 1 Y N N N N N 4.112 1.608 44.734 0.141 3.301 0.320 N1 LLF 12
LLF C5 C5 C 0 1 Y N N N N N 4.472 0.230 42.815 0.587 1.020 -0.029 C5 LLF 13
LLF C6 C6 C 0 1 Y N N N N N 3.665 1.120 43.537 1.004 2.305 0.252 C6 LLF 14
LLF C5M C5M C 0 1 N N N N N N 4.266 0.059 41.338 1.584 -0.107 -0.105 C5M LLF 15
LLF O4P O4P O 0 1 N N N N N N 3.470 -1.056 40.865 2.896 0.399 0.150 O4P LLF 16
LLF P P P 0 1 N N N N N N 3.972 -2.084 39.742 3.904 -0.853 0.053 P LLF 17
LLF OP1 OP1 O 0 1 N N N N N N 3.008 -3.160 39.889 3.915 -1.419 -1.454 OP1 LLF 18
LLF OP2 OP2 O 0 1 N N N N N N 3.861 -1.548 38.376 5.388 -0.378 0.459 OP2 LLF 19
LLF OP3 OP3 O 0 1 N N N N N N 5.326 -2.620 39.969 3.457 -1.919 0.978 OP3 LLF 20
LLF HBF HBF H 0 1 N N N N N N 7.755 -3.457 43.415 -4.282 -3.614 -0.124 HBF LLF 21
LLF HAF1 1HAF H 0 0 N N N N N N 7.522 -2.199 41.333 -3.588 -2.110 -1.969 HAF1 LLF 22
LLF HAF2 2HAF H 0 0 N N N N N N 9.227 -1.671 41.379 -2.172 -2.807 -1.147 HAF2 LLF 23
LLF H4A H4A H 0 1 N N N N N N 6.364 -1.268 41.479 -0.573 -1.404 -0.606 H4A LLF 24
LLF HO3 HO3 H 0 1 N N N N N N 8.083 -0.047 44.390 -3.378 1.488 0.513 HO3 LLF 25
LLF H2A1 1H2A H 0 0 N N N N N N 5.066 0.567 47.261 -2.184 4.766 -0.762 H2A1 LLF 26
LLF H2A2 2H2A H 0 0 N N N N N N 5.042 2.354 47.076 -3.062 3.966 0.564 H2A2 LLF 27
LLF H2A3 3H2A H 0 0 N N N N N N 6.596 1.461 46.965 -1.682 5.031 0.926 H2A3 LLF 28
LLF H6 H6 H 0 1 N N N N N N 2.701 1.417 43.152 2.053 2.499 0.417 H6 LLF 29
LLF H5M1 1H5M H 0 0 N N N N N N 5.274 -0.143 40.946 1.335 -0.863 0.640 H5M1 LLF 30
LLF H5M2 2H5M H 0 0 N N N N N N 3.763 0.972 40.986 1.553 -0.554 -1.099 H5M2 LLF 31
LLF HP1 HP1 H 0 1 N N N N N N 2.797 -3.516 39.034 4.211 -0.695 -2.022 HP1 LLF 32
LLF HP2 HP2 H 0 1 N N N N N N 3.837 -0.599 38.409 5.959 -1.156 0.388 HP2 LLF 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LLF CBF CAF SING N N 1
LLF CBF F1 SING N N 2
LLF CBF F2 SING N N 3
LLF CBF HBF SING N N 4
LLF CAF NF SING N N 5
LLF CAF HAF1 SING N N 6
LLF CAF HAF2 SING N N 7
LLF NF C4A DOUB N N 8
LLF C4A C4 SING N N 9
LLF C4A H4A SING N N 10
LLF C4 C3 DOUB Y N 11
LLF C4 C5 SING Y N 12
LLF C3 O3 SING N N 13
LLF C3 C2 SING Y N 14
LLF O3 HO3 SING N N 15
LLF C2 C2A SING N N 16
LLF C2 N1 DOUB Y N 17
LLF C2A H2A1 SING N N 18
LLF C2A H2A2 SING N N 19
LLF C2A H2A3 SING N N 20
LLF N1 C6 SING Y N 21
LLF C5 C6 DOUB Y N 22
LLF C5 C5M SING N N 23
LLF C6 H6 SING N N 24
LLF C5M O4P SING N N 25
LLF C5M H5M1 SING N N 26
LLF C5M H5M2 SING N N 27
LLF O4P P SING N N 28
LLF P OP1 SING N N 29
LLF P OP2 SING N N 30
LLF P OP3 DOUB N N 31
LLF OP1 HP1 SING N N 32
LLF OP2 HP2 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LLF SMILES ACDLabs 10.04 "FC(F)C/N=C/c1c(cnc(c1O)C)COP(=O)(O)O"
LLF SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C=NCC(F)F)c1O"
LLF SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C=NCC(F)F)c1O"
LLF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCC(F)F)O"
LLF SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCC(F)F)O"
LLF InChI InChI 1.03 "InChI=1S/C10H13F2N2O5P/c1-6-10(15)8(3-13-4-9(11)12)7(2-14-6)5-19-20(16,17)18/h2-3,9,15H,4-5H2,1H3,(H2,16,17,18)/b13-3+"
LLF InChIKey InChI 1.03 OXVHZSPVJUCFDH-QLKAYGNNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LLF "SYSTEMATIC NAME" ACDLabs 10.04 "(4-{(E)-[(2,2-difluoroethyl)imino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate"
LLF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-(2,2-difluoroethyliminomethyl)-5-hydroxy-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LLF "Create component" 2006-04-05 RCSB
LLF "Modify descriptor" 2011-06-04 RCSB
LLF "Modify synonyms" 2021-03-13 RCSB
LLF "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LLF
_pdbx_chem_comp_synonyms.name "(E)-N-(2,2-DIFLUOROETHYL)PYRIDOXIMINE-5'-PHOSPHATE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id LLF
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom CBF
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#