data_LM2 # _chem_comp.id LM2 _chem_comp.name "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-(Z, 3S,4S,5R,6R)-3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-PIPERIDIN-2-ONE" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C19 H34 N2 O15" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-D-GLUCONHYDROXIMO-1,5-LACTAM" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-05 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1U33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LM2 CA1 CA1 C 0 1 N N N 10.336 16.889 44.086 -5.098 -0.487 -1.018 CA1 LM2 1 LM2 NA1 NA1 N 0 1 N N N 9.288 16.853 44.895 -6.132 -0.902 -1.673 NA1 LM2 2 LM2 OA7 OA7 O 0 1 N N N 8.636 15.706 44.999 -6.119 -2.182 -2.279 OA7 LM2 3 LM2 CA2 CA2 C 0 1 N N S 11.109 18.214 43.945 -5.081 0.876 -0.359 CA2 LM2 4 LM2 OA2 OA2 O 0 1 N N N 10.390 19.263 44.375 -4.219 1.752 -1.088 OA2 LM2 5 LM2 CA3 CA3 C 0 1 N N R 11.625 18.338 42.468 -4.559 0.713 1.074 CA3 LM2 6 LM2 OA3 OA3 O 0 1 N N N 12.306 19.468 42.324 -5.482 -0.071 1.832 OA3 LM2 7 LM2 CA4 CA4 C 0 1 N N R 12.468 17.069 42.079 -3.199 0.011 1.041 CA4 LM2 8 LM2 OA4 OA4 O 0 1 N N N 12.515 16.967 40.758 -2.293 0.766 0.234 OA4 LM2 9 LM2 CA5 CA5 C 0 1 N N R 11.866 15.744 42.426 -3.362 -1.392 0.448 CA5 LM2 10 LM2 NA5 NA5 N 0 1 N N N 10.744 15.713 43.383 -3.964 -1.276 -0.886 NA5 LM2 11 LM2 CA6 CA6 C 0 1 N N N 12.978 14.844 43.054 -4.275 -2.226 1.348 CA6 LM2 12 LM2 OA6 OA6 O 0 1 N N N 13.442 15.389 44.224 -4.297 -3.577 0.883 OA6 LM2 13 LM2 CB1 CB1 C 0 1 N N S 13.591 17.686 40.172 -1.550 1.748 0.960 CB1 LM2 14 LM2 CB2 CB2 C 0 1 N N R 13.243 17.925 38.626 -0.806 2.656 -0.024 CB2 LM2 15 LM2 CB3 CB3 C 0 1 N N R 13.291 16.600 37.780 0.192 1.816 -0.826 CB3 LM2 16 LM2 CB4 CB4 C 0 1 N N S 14.735 16.016 37.919 1.143 1.108 0.145 CB4 LM2 17 LM2 CB5 CB5 C 0 1 N N R 14.982 15.698 39.537 0.324 0.261 1.122 CB5 LM2 18 LM2 CB6 CB6 C 0 1 N N N 16.354 15.118 39.818 1.263 -0.402 2.133 CB6 LM2 19 LM2 OB2 OB2 O 0 1 N N N 11.950 18.571 38.559 -1.744 3.263 -0.916 OB2 LM2 20 LM2 OB3 OB3 O 0 1 N N N 12.989 16.923 36.400 0.943 2.666 -1.696 OB3 LM2 21 LM2 OB4 OB4 O 0 1 N N N 14.815 14.820 37.162 2.034 0.265 -0.589 OB4 LM2 22 LM2 OB5 OB5 O 0 1 N N N 14.886 16.970 40.291 -0.606 1.098 1.812 OB5 LM2 23 LM2 OB6 OB6 O 0 1 N N N 17.349 15.947 39.321 0.510 -1.265 2.986 OB6 LM2 24 LM2 CD1 CD1 C 0 1 N N R 16.064 14.759 36.395 3.186 0.940 -1.099 CD1 LM2 25 LM2 CD2 CD2 C 0 1 N N R 15.874 14.787 34.825 3.901 0.038 -2.108 CD2 LM2 26 LM2 CD3 CD3 C 0 1 N N R 15.046 13.497 34.401 4.382 -1.230 -1.396 CD3 LM2 27 LM2 CD4 CD4 C 0 1 N N S 15.867 12.228 34.795 5.288 -0.834 -0.227 CD4 LM2 28 LM2 CD5 CD5 C 0 1 N N R 16.096 12.236 36.416 4.520 0.102 0.710 CD5 LM2 29 LM2 CD6 CD6 C 0 1 N N N 16.937 11.005 36.865 5.437 0.551 1.849 CD6 LM2 30 LM2 OD2 OD2 O 0 1 N N N 15.170 16.002 34.499 2.997 -0.317 -3.156 OD2 LM2 31 LM2 OD3 OD3 O 0 1 N N N 14.868 13.495 33.007 5.115 -2.045 -2.313 OD3 LM2 32 LM2 OD4 OD4 O 0 1 N N N 15.138 11.007 34.426 5.685 -2.005 0.489 OD4 LM2 33 LM2 OD5 OD5 O 0 1 N N N 16.810 13.505 36.782 4.074 1.246 -0.022 OD5 LM2 34 LM2 OD6 OD6 O 0 1 N N N 18.247 11.020 36.286 4.689 1.330 2.785 OD6 LM2 35 LM2 CD7 CD7 C 0 1 N N N 15.847 10.133 33.507 6.893 -2.598 0.009 CD7 LM2 36 LM2 HA7 HA7 H 0 1 N N N 7.884 15.680 45.579 -6.936 -2.405 -2.746 HA7 LM2 37 LM2 HA2 HA2 H 0 1 N N N 12.002 18.213 44.612 -6.090 1.286 -0.338 HA2 LM2 38 LM2 H7 H7 H 0 1 N N N 10.866 20.080 44.288 -4.483 1.885 -2.009 H7 LM2 39 LM2 HA3 HA3 H 0 1 N N N 10.760 18.379 41.765 -4.451 1.695 1.535 HA3 LM2 40 LM2 H6 H6 H 0 1 N N N 12.618 19.543 41.430 -6.368 0.314 1.893 H6 LM2 41 LM2 HA4 HA4 H 0 1 N N N 13.425 17.233 42.627 -2.806 -0.067 2.054 HA4 LM2 42 LM2 H1 H1 H 0 1 N N N 11.445 15.400 41.452 -2.386 -1.871 0.369 H1 LM2 43 LM2 HA5 HA5 H 0 1 N N N 9.928 15.335 42.900 -3.580 -1.735 -1.649 HA5 LM2 44 LM2 HA61 1HA6 H 0 0 N N N 12.627 13.795 43.197 -3.899 -2.200 2.371 HA61 LM2 45 LM2 HA62 2HA6 H 0 0 N N N 13.805 14.647 42.333 -5.285 -1.816 1.321 HA62 LM2 46 LM2 HA6 HA6 H 0 1 N N N 14.118 14.841 44.605 -4.858 -4.165 1.408 HA6 LM2 47 LM2 HB1 HB1 H 0 1 N N N 13.708 18.652 40.715 -2.232 2.348 1.563 HB1 LM2 48 LM2 HB2 HB2 H 0 1 N N N 14.020 18.580 38.168 -0.272 3.430 0.526 HB2 LM2 49 LM2 HB3 HB3 H 0 1 N N N 12.547 15.848 38.133 -0.346 1.073 -1.416 HB3 LM2 50 LM2 HB4 HB4 H 0 1 N N N 15.508 16.727 37.545 1.717 1.851 0.699 HB4 LM2 51 LM2 HB5 HB5 H 0 1 N N N 14.210 14.954 39.845 -0.218 -0.508 0.571 HB5 LM2 52 LM2 HB61 1HB6 H 0 0 N N N 16.497 14.904 40.902 2.017 -0.983 1.602 HB61 LM2 53 LM2 HB62 2HB6 H 0 0 N N N 16.450 14.077 39.428 1.751 0.366 2.732 HB62 LM2 54 LM2 H5 H5 H 0 1 N N N 11.743 18.712 37.642 -2.410 3.807 -0.475 H5 LM2 55 LM2 H4 H4 H 0 1 N N N 13.018 16.122 35.889 0.402 3.152 -2.333 H4 LM2 56 LM2 HB6 HB6 H 0 1 N N N 18.208 15.583 39.497 1.042 -1.720 3.654 HB6 LM2 57 LM2 HD1 HD1 H 0 1 N N N 16.635 15.682 36.650 2.878 1.863 -1.590 HD1 LM2 58 LM2 HD2 HD2 H 0 1 N N N 16.845 14.771 34.278 4.756 0.567 -2.527 HD2 LM2 59 LM2 HD3 HD3 H 0 1 N N N 14.054 13.500 34.911 3.523 -1.786 -1.019 HD3 LM2 60 LM2 HD4 HD4 H 0 1 N N N 16.843 12.243 34.256 6.172 -0.322 -0.608 HD4 LM2 61 LM2 HD5 HD5 H 0 1 N N N 15.109 12.180 36.932 3.659 -0.423 1.123 HD5 LM2 62 LM2 HD61 1HD6 H 0 0 N N N 16.984 10.928 37.976 5.848 -0.325 2.351 HD61 LM2 63 LM2 HD62 2HD6 H 0 0 N N N 16.406 10.048 36.647 6.251 1.153 1.444 HD62 LM2 64 LM2 H3 H3 H 0 1 N N N 15.055 16.018 33.556 2.648 0.439 -3.647 H3 LM2 65 LM2 H2 H2 H 0 1 N N N 14.373 12.724 32.753 4.603 -2.328 -3.084 H2 LM2 66 LM2 HD6 HD6 H 0 1 N N N 18.760 10.268 36.560 5.209 1.649 3.535 HD6 LM2 67 LM2 HD71 1HD7 H 0 0 N N N 15.293 9.206 33.227 7.126 -3.481 0.604 HD71 LM2 68 LM2 HD72 2HD7 H 0 0 N N N 16.148 10.695 32.592 6.766 -2.886 -1.035 HD72 LM2 69 LM2 HD73 3HD7 H 0 0 N N N 16.852 9.875 33.914 7.708 -1.880 0.091 HD73 LM2 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LM2 CA1 NA1 DOUB N Z 1 LM2 CA1 CA2 SING N N 2 LM2 CA1 NA5 SING N N 3 LM2 NA1 OA7 SING N N 4 LM2 OA7 HA7 SING N N 5 LM2 CA2 OA2 SING N N 6 LM2 CA2 CA3 SING N N 7 LM2 CA2 HA2 SING N N 8 LM2 OA2 H7 SING N N 9 LM2 CA3 OA3 SING N N 10 LM2 CA3 CA4 SING N N 11 LM2 CA3 HA3 SING N N 12 LM2 OA3 H6 SING N N 13 LM2 CA4 OA4 SING N N 14 LM2 CA4 CA5 SING N N 15 LM2 CA4 HA4 SING N N 16 LM2 OA4 CB1 SING N N 17 LM2 CA5 NA5 SING N N 18 LM2 CA5 CA6 SING N N 19 LM2 CA5 H1 SING N N 20 LM2 NA5 HA5 SING N N 21 LM2 CA6 OA6 SING N N 22 LM2 CA6 HA61 SING N N 23 LM2 CA6 HA62 SING N N 24 LM2 OA6 HA6 SING N N 25 LM2 CB1 CB2 SING N N 26 LM2 CB1 OB5 SING N N 27 LM2 CB1 HB1 SING N N 28 LM2 CB2 CB3 SING N N 29 LM2 CB2 OB2 SING N N 30 LM2 CB2 HB2 SING N N 31 LM2 CB3 CB4 SING N N 32 LM2 CB3 OB3 SING N N 33 LM2 CB3 HB3 SING N N 34 LM2 CB4 CB5 SING N N 35 LM2 CB4 OB4 SING N N 36 LM2 CB4 HB4 SING N N 37 LM2 CB5 CB6 SING N N 38 LM2 CB5 OB5 SING N N 39 LM2 CB5 HB5 SING N N 40 LM2 CB6 OB6 SING N N 41 LM2 CB6 HB61 SING N N 42 LM2 CB6 HB62 SING N N 43 LM2 OB2 H5 SING N N 44 LM2 OB3 H4 SING N N 45 LM2 OB4 CD1 SING N N 46 LM2 OB6 HB6 SING N N 47 LM2 CD1 CD2 SING N N 48 LM2 CD1 OD5 SING N N 49 LM2 CD1 HD1 SING N N 50 LM2 CD2 CD3 SING N N 51 LM2 CD2 OD2 SING N N 52 LM2 CD2 HD2 SING N N 53 LM2 CD3 CD4 SING N N 54 LM2 CD3 OD3 SING N N 55 LM2 CD3 HD3 SING N N 56 LM2 CD4 CD5 SING N N 57 LM2 CD4 OD4 SING N N 58 LM2 CD4 HD4 SING N N 59 LM2 CD5 CD6 SING N N 60 LM2 CD5 OD5 SING N N 61 LM2 CD5 HD5 SING N N 62 LM2 CD6 OD6 SING N N 63 LM2 CD6 HD61 SING N N 64 LM2 CD6 HD62 SING N N 65 LM2 OD2 H3 SING N N 66 LM2 OD3 H2 SING N N 67 LM2 OD4 CD7 SING N N 68 LM2 OD6 HD6 SING N N 69 LM2 CD7 HD71 SING N N 70 LM2 CD7 HD72 SING N N 71 LM2 CD7 HD73 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LM2 SMILES ACDLabs 10.04 "O(C1C(O)C(O)C(=N\O)\NC1CO)C3OC(C(OC2OC(CO)C(OC)C(O)C2O)C(O)C3O)CO" LM2 InChI InChI 1.03 "InChI=1S/C19H34N2O15/c1-32-15-6(3-23)33-19(12(29)9(15)26)36-16-7(4-24)34-18(13(30)10(16)27)35-14-5(2-22)20-17(21-31)11(28)8(14)25/h5-16,18-19,22-31H,2-4H2,1H3,(H,20,21)/t5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16-,18-,19-/m1/s1" LM2 InChIKey InChI 1.03 INFXBQXKGPGIEV-PXPLVWFRSA-N LM2 SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@H](O)[C@@H](O)[C@H](O[C@@H]1CO)O[C@H]2[C@H](O)[C@@H](O)[C@H](O[C@@H]2CO)O[C@@H]3[C@@H](CO)NC(=N\O)/[C@H](O)[C@H]3O" LM2 SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](O)[CH](O[CH]1CO)O[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)O[CH]3[CH](CO)NC(=NO)[CH](O)[CH]3O" LM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CO[C@@H]1[C@H](O[C@@H]([C@@H]([C@H]1O)O)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O[C@@H]3[C@H](N/C(=N\O)/[C@@H]([C@H]3O)O)CO)CO)CO" LM2 SMILES "OpenEye OEToolkits" 1.7.5 "COC1C(OC(C(C1O)O)OC2C(OC(C(C2O)O)OC3C(NC(=NO)C(C3O)O)CO)CO)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LM2 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5S,6Z)-4,5-dihydroxy-6-(hydroxyimino)-2-(hydroxymethyl)piperidin-3-yl 4-O-(4-O-methyl-alpha-D-glucopyranosyl)-alpha-D-glucopyranoside" LM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2Z,3S,4R,5R,6R)-5-[(2S,3R,4R,5S,6R)-5-[(2R,3R,4R,5S,6R)-3,4-dihydroxy-6-(hydroxymethyl)-5-methoxy-oxan-2-yl]oxy-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-hydroxyimino-6-(hydroxymethyl)piperidine-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LM2 "Create component" 2004-08-05 RCSB LM2 "Modify descriptor" 2011-06-04 RCSB LM2 "Modify descriptor" 2012-01-05 RCSB LM2 "Modify coordinates" 2012-01-05 RCSB LM2 "Modify linking type" 2020-07-23 RCSB LM2 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LM2 _pdbx_chem_comp_synonyms.name "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-D-GLUCONHYDROXIMO-1,5-LACTAM" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##