data_LME # _chem_comp.id LME _chem_comp.name "(2S,3R)-2-azanyl-3-methyl-pentanedioic acid" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O4" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms "(3R)-3-methyl-L-glutamic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-11-05 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.156 _chem_comp.one_letter_code E _chem_comp.three_letter_code LME _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XT7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LME N N N 0 1 N N N Y Y N -7.673 -17.247 -4.828 1.200 1.888 -0.104 N LME 1 LME CA CA C 0 1 N N S Y N N -7.596 -17.916 -3.525 1.143 0.579 0.560 CA LME 2 LME CB CB C 0 1 N N R N N N -7.247 -19.438 -3.656 -0.108 -0.172 0.099 CB LME 3 LME C1 C1 C 0 1 N N N N N N -5.791 -19.677 -4.123 -0.054 -0.370 -1.417 C1 LME 4 LME CG CG C 0 1 N N N N N N -8.243 -20.189 -4.593 -1.353 0.640 0.463 CG LME 5 LME CD CD C 0 1 N N N N N N -9.677 -20.046 -4.143 -2.588 -0.154 0.120 CD LME 6 LME OE1 OE1 O 0 1 N N N N N N -10.064 -20.543 -2.936 -2.483 -1.255 -0.365 OE1 LME 7 LME OE2 OE2 O 0 1 N N N N N N -10.510 -19.449 -4.880 -3.804 0.363 0.354 OE2 LME 8 LME C C C 0 1 N N N Y N Y -6.794 -17.195 -2.449 2.369 -0.220 0.202 C LME 9 LME O O O 0 1 N N N Y N Y -6.528 -17.838 -1.395 3.013 0.069 -0.779 O LME 10 LME H2 H2 H 0 1 N Y N Y Y N -7.897 -16.282 -4.695 1.237 1.784 -1.107 H2 LME 11 LME H H H 0 1 N N N Y Y N -6.792 -17.323 -5.294 0.421 2.468 0.171 H LME 12 LME HA HA H 0 1 N N N Y N N -8.622 -17.854 -3.134 1.104 0.721 1.640 HA LME 13 LME HB HB H 0 1 N N N N N N -7.346 -19.853 -2.642 -0.151 -1.143 0.592 HB LME 14 LME H11 H11 H 0 1 N N N N N N -5.602 -20.758 -4.197 -0.011 0.601 -1.910 H11 LME 15 LME H12 H12 H 0 1 N N N N N N -5.641 -19.210 -5.108 0.833 -0.949 -1.676 H12 LME 16 LME H13 H13 H 0 1 N N N N N N -5.095 -19.232 -3.396 -0.945 -0.905 -1.745 H13 LME 17 LME HG2 HG2 H 0 1 N N N N N N -8.152 -19.770 -5.606 -1.346 0.858 1.531 HG2 LME 18 LME HG3 HG3 H 0 1 N N N N N N -7.983 -21.258 -4.594 -1.355 1.574 -0.098 HG3 LME 19 LME HE2 HE2 H 0 1 N N N N N N -11.357 -19.431 -4.451 -4.566 -0.183 0.118 HE2 LME 20 LME OXT OXT O 0 1 N Y N Y N Y -6.271 -15.864 -2.428 2.746 -1.252 0.972 OXT LME 21 LME HXT HXT H 0 1 N Y N Y N Y -5.814 -15.716 -1.608 3.539 -1.735 0.702 HXT LME 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LME N CA SING N N 1 LME N H2 SING N N 2 LME N H SING N N 3 LME CA CB SING N N 4 LME CA C SING N N 5 LME CA HA SING N N 6 LME CB C1 SING N N 7 LME CB CG SING N N 8 LME CB HB SING N N 9 LME C1 H11 SING N N 10 LME C1 H12 SING N N 11 LME C1 H13 SING N N 12 LME CG CD SING N N 13 LME CG HG2 SING N N 14 LME CG HG3 SING N N 15 LME CD OE1 DOUB N N 16 LME CD OE2 SING N N 17 LME OE2 HE2 SING N N 18 LME C O DOUB N N 19 LME C OXT SING N N 20 LME OXT HXT SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LME SMILES ACDLabs 12.01 "O=C(O)C(N)C(CC(=O)O)C" LME SMILES_CANONICAL CACTVS 3.370 "C[C@H](CC(O)=O)[C@H](N)C(O)=O" LME SMILES CACTVS 3.370 "C[CH](CC(O)=O)[CH](N)C(O)=O" LME SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H](CC(=O)O)[C@@H](C(=O)O)N" LME SMILES "OpenEye OEToolkits" 1.7.0 "CC(CC(=O)O)C(C(=O)O)N" LME InChI InChI 1.03 "InChI=1S/C6H11NO4/c1-3(2-4(8)9)5(7)6(10)11/h3,5H,2,7H2,1H3,(H,8,9)(H,10,11)/t3-,5+/m1/s1" LME InChIKey InChI 1.03 FHJNAFIJPFGZRI-WUJLRWPWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LME "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-3-methyl-L-glutamic acid" LME "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-2-azanyl-3-methyl-pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LME "Create component" 2004-11-05 RCSB LME "Other modification" 2010-10-26 RCSB LME "Modify descriptor" 2011-06-04 RCSB LME "Modify synonyms" 2021-03-01 PDBE LME "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LME _pdbx_chem_comp_synonyms.name "(3R)-3-methyl-L-glutamic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #